Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039010.1

Orthogroup ID

OG0015494

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 841

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039010.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgagctcacagctcttgccagtcacacctctgctctccataaccaacaccaaaacaccaccaccaatatcaacatcaacatccacatttcaccagctttcccaaagaagtgaaagaacccacattccttctcatgtctacaagcaccctacagccatactcctcgagctctgcacttccatgagagaactccaccaaatcttccccctcataatcaagaacggtctctacaacgagcactacttccagaccaagctcgtcagcctcttctgcaaatacggcagcccaattgaagcccaccgggttttcgacgccgtcggggacaaactcgacgttttctaccacactctgctcaaagggtacgccaagaactcctttttaggggaggccatttccttcttttgccgattgaagcatgatggggttgcccctgttgtgtataactttacttacttgcttaaggcgtgtggcgataatgctgacctgaggagggggaaggagattcatggctctctaattaccaatggctttagtactaatctgtttgcgatgaccggagttgtgaatttgtatgctaagtgtaggcagattgatgatgcatataagatgttcgatagaatgcctgagagggacttggtttcttggaacactatcgttgctgcttatgcgcaaaatgggttcgccaggagagctttggagttggttataaggatgcaggaggaaggccagaggccggattccatcacattggtcactgcactgcctgctgttgcagattttgggtccttggtgatcggaaagtcgattcatgcctatgttataagagctagttttgagtca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

280

Amino Acids

31.47

Weight (kDa)

8.88

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11290
fragaria_vesca	FvH4_7g04350
malus_domestica	MD07G1040900.v1.1
prunus_persica	Prupe.2G049000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329341
rosa_laevigata	RLG00000029901
rosa_multiflora	Rmu_co8161036.1_g000001 Rmu_sc0006184.1_g000011 Rmu_sc0039010.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321210
rosa_rugosa	Rorug01G0078700
rosa_samantha	Rh1AG097000 Rh1BG077600 Rh1DG100500
rosa_wichuraiana	Rw1G007520 Rw1G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	707, 821
Acc16I	TGCGCA	1 cut(s)	669
AccI	GTMKAC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	565
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	2 cut(s)	362, 535
AfiI	CCNNNNNNNGG	3 cut(s)	381, 490, 733
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	2 cut(s)	293, 412
AjnI	CCWGG	1 cut(s)	683
AloI	GAACNNNNNNTCC	2 cut(s)	109, 141
AluBI	AGCT	7 cut(s)	6, 13, 97, 169, 256, 692, 827
AluI	AGCT	7 cut(s)	6, 13, 97, 169, 256, 692, 827
Alw21I	GWGCWC	3 cut(s)	8, 171, 240
Alw26I	GTCTC	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	3 cut(s)	387, 724, 731
ApeKI	GCWGC	2 cut(s)	282, 659
ApoI	RAATTY	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	783
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	83, 802
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	783
AxyI	CCTNAGG	1 cut(s)	485
BanII	GRGCYC	2 cut(s)	8, 171
Bbv12I	GWGCWC	3 cut(s)	8, 171, 240
BbvI	GCAGC	2 cut(s)	294, 646
BccI	CCATC	2 cut(s)	413, 749
BceAI	ACGGC	2 cut(s)	295, 299
BciT130I	CCWGG	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	828
BfmI	CTRYAG	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	458
BisI	GCNGC	2 cut(s)	283, 660
BlsI	GCNGC	2 cut(s)	284, 661
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	302, 685
Bme18I	GGWCC	1 cut(s)	783
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	783
BmiI	GGNNCC	1 cut(s)	784
BmrFI	CCNGG	2 cut(s)	302, 685
BmsI	GCATC	2 cut(s)	586, 702
BpuMI	CCSGG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	786
BsaWI	WCCGGW	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	3 cut(s)	381, 490, 733
Bse1I	ACTGG	1 cut(s)	20
Bse21I	CCTNAGG	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	1 cut(s)	786
BseGI	GGATG	2 cut(s)	80, 717
BseLI	CCNNNNNNNGG	3 cut(s)	381, 490, 733
BseMII	CTCAG	2 cut(s)	476, 615
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	2 cut(s)	152, 502
BseXI	GCAGC	2 cut(s)	294, 646
BsgI	GTGCAG	2 cut(s)	157, 741
BshFI	GGCC	3 cut(s)	389, 726, 733
BsiHKAI	GWGCWC	3 cut(s)	8, 171, 240
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	3 cut(s)	301, 555, 734
BslFI	GGGAC	2 cut(s)	335, 644
BslI	CCNNNNNNNGG	3 cut(s)	381, 490, 733
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	2 cut(s)	335, 644
BsmI	GAATGC	1 cut(s)	624
BsnI	GGCC	3 cut(s)	389, 726, 733
Bso31I	GGTCTC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	8, 171, 240
Bsp143I	GATC	1 cut(s)	792
BspANI	GGCC	3 cut(s)	389, 726, 733
BspCNI	CTCAG	2 cut(s)	477, 616
BspLI	GGNNCC	1 cut(s)	784
BspTI	CTTAAG	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	786
BssMI	GATC	1 cut(s)	792
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	312
BstAFI	CTTAAG	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	3 cut(s)	485, 576, 624
BstF5I	GGATG	2 cut(s)	80, 717
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	1 cut(s)	795
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	792
BstMWI	GCNNNNNNNGC	5 cut(s)	270, 279, 665, 689, 764
BstNI	CCWGG	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	300, 683
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	294, 646
BstXI	CCANNNNNNTGG	1 cut(s)	748
Bsu36I	CCTNAGG	1 cut(s)	485
BsuRI	GGCC	3 cut(s)	389, 726, 733
BtgZI	GCGATG	1 cut(s)	563
BtsCI	GGATG	2 cut(s)	80, 717
BtsI	GCAGTG	2 cut(s)	753, 758
BtsIMutI	CAGTG	2 cut(s)	753, 758
Cac8I	GCNNGC	1 cut(s)	765
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	783
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	361, 534
CviAII	CATG	5 cut(s)	134, 181, 416, 506, 809
CviQI	GTAC	2 cut(s)	361, 534
DdeI	CTNAG	3 cut(s)	485, 576, 624
DpnI	GATC	1 cut(s)	794
DpnII	GATC	1 cut(s)	792
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	2 cut(s)	6, 169
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	2 cut(s)	8, 171
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	783
Eco53kI	GAGCTC	2 cut(s)	6, 169
Eco81I	CCTNAGG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	2 cut(s)	6, 169
EcoO109I	RGGNCCY	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	683
EcoT14I	CCWWGG	1 cut(s)	786
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	2 cut(s)	8, 171
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	5 cut(s)	137, 184, 419, 509, 812
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	2 cut(s)	335, 644
FatI	CATG	5 cut(s)	133, 180, 415, 505, 808
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	283, 660
FokI	GGATG	2 cut(s)	67, 724
FriOI	GRGCYC	2 cut(s)	8, 171
Fsp4HI	GCNGC	2 cut(s)	283, 660
FspBI	CTAG	1 cut(s)	828
FspI	TGCGCA	1 cut(s)	669
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	2 cut(s)	283, 660
HaeIII	GGCC	3 cut(s)	389, 726, 733
HapII	CCGG	3 cut(s)	301, 555, 734
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	670
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	5 cut(s)	137, 184, 419, 509, 812
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HinfI	GANTC	4 cut(s)	502, 737, 805, 836
HpaII	CCGG	3 cut(s)	301, 555, 734
HphI	GGTGA	2 cut(s)	83, 802
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	797
Hpy188III	TCNNGA	2 cut(s)	217, 247
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	3 cut(s)	314, 320, 335
HpyAV	CCTTC	4 cut(s)	138, 406, 490, 716
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	6 cut(s)	174, 273, 599, 715, 758, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	270, 279, 665, 689, 764
HpyF3I	CTNAG	3 cut(s)	485, 576, 624
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	5 cut(s)	137, 184, 419, 509, 812
HspAI	GCGC	1 cut(s)	668
Kzo9I	GATC	1 cut(s)	792
Lsp1109I	GCAGC	2 cut(s)	294, 646
LweI	GCATC	2 cut(s)	586, 702
MaeI	CTAG	1 cut(s)	828
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	22, 751
MalI	GATC	1 cut(s)	794
MboI	GATC	1 cut(s)	792
MboII	GAAGA	2 cut(s)	193, 259
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	3 cut(s)	8, 171, 240
MluCI	AATT	3 cut(s)	288, 516, 565
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	2 cut(s)	179, 813
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	3 cut(s)	301, 555, 734
MspR9I	CCNGG	2 cut(s)	302, 685
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	5 cut(s)	270, 279, 665, 689, 764
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	1 cut(s)	792
NlaIII	CATG	5 cut(s)	137, 184, 419, 509, 812
NlaIV	GGNNCC	1 cut(s)	784
NmuCI	GTSAC	2 cut(s)	22, 751
NsbI	TGCGCA	1 cut(s)	669
NsiI	ATGCAT	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	164
PctI	GAATGC	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	502, 737, 805
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	284, 661
PpuMI	RGGWCCY	1 cut(s)	783
PsiI	TTATAA	2 cut(s)	707, 821
Psp124BI	GAGCTC	2 cut(s)	8, 171
Psp5II	RGGWCCY	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	683
PspN4I	GGNNCC	1 cut(s)	784
PspPI	GGNCC	1 cut(s)	783
PspPPI	RGGWCCY	1 cut(s)	783
PspXI	VCTCGAGB	1 cut(s)	164
PsrI	GAACNNNNNNTAC	2 cut(s)	212, 244
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	2 cut(s)	362, 535
RsaNI	GTAC	2 cut(s)	361, 534
RseI	CAYNNNNRTG	2 cut(s)	179, 813
SacI	GAGCTC	2 cut(s)	8, 171
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	2 cut(s)	283, 660
Sau3AI	GATC	1 cut(s)	792
Sau96I	GGNCC	1 cut(s)	783
ScaI	AGTACT	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	302, 685
SduI	GDGCHC	3 cut(s)	8, 171, 240
SfaNI	GCATC	2 cut(s)	586, 702
SfcI	CTRYAG	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	783
SlaI	CTCGAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	179, 813
SmlI	CTYRAG	2 cut(s)	164, 458
SmoI	CTYRAG	2 cut(s)	164, 458
Sse9I	AATT	3 cut(s)	288, 516, 565
SspMI	CTAG	1 cut(s)	828
SstI	GAGCTC	2 cut(s)	8, 171
StyD4I	CCNGG	2 cut(s)	300, 683
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	5 cut(s)	165, 309, 330, 612, 803
TasI	AATT	3 cut(s)	288, 516, 565
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	3 cut(s)	502, 737, 805
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	760, 765
TseFI	GTSAC	2 cut(s)	22, 751
TseI	GCWGC	2 cut(s)	282, 659
Tsp45I	GTSAC	2 cut(s)	22, 751
TspDTI	ATGAA	2 cut(s)	494, 797
TspRI	CASTG	2 cut(s)	760, 765
Tth111I	GACNNNGTC	1 cut(s)	314
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	783
XapI	RAATTY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	691
XhoI	CTCGAG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	828
ZrmI	AGTACT	1 cut(s)	535
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.