Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0015494

Physical Location & Seq

Genomic Coordinates Forward (+)

16924587 .. 16927918

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG097000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2496 bp

ATGAGCTCACAGCTCTTGCCAGTCACACCTCTGCTCTCCATAACCAACACCAAAACACCACCACCACCACCACCACCACCCCCAATATCAACTAGACTTCCAATACCAACATCAACATCAACATCAACATTTCACCAGCTTTCCCAAAGAAGCCACATTCCTTCTCATGTCTACAAGCACCCTACAGCCATACTCCTCGAGCTCTGCACTTCCATGAGAGAGCTCCACCAAATCTTCCCCCTCATAATCAAGAACGGTCTCTATAACGAGCACTACTTCCAGACCAAGCTCGTCAGCCTCTTCTGCAAATACGGCAGTCCAATTGAAGCCCACCGGGTTTTCGACGCCGTCGGGGACAAACTCGACGTTTTCTATCACACTCTGCTTAAAGGGTATGCCAAGAACTCCTCTTTAGGGGAGGCCATTTCCTTCTTTTGCCGGTTGAAGCATGATGGGGTTGCCCCTGTTGTGTATAACTTTACTTACTTGCTCAAGGCTTGTGGCGATAATGCTGACCTCAGGAGGGGGAAGGAGATTCATGGCTCTCTGATTACCAATGGCTTTGCTACTAATCTGTTTGCGATGACCGGAGTTGTGAACTTGTATGCTAAGTGTAGGCAGATTGATGATGCATATAAGATGTTCGATAGAATGCCTGAGAGGGACTTGGTTTCTTGGAATACTATTGTTGCTGCTTATGCGCAAAATGGGTTGGCCAGGAGAGCTTTGGAGTTGGTTATAAGGATGCAGGAGGAAGGCCAGAGGCCCGATTCCATCACATTGGTCACTGCATTGCCTGCTGTTGCAGATTTTGGGTCCTTGGTGATCGGAAAGTCGATTCATGCCTATGTTATAAGAGCTAGTTTTGAGTCACTTGTGAACATTTCTACCGCTCTTCTAGACATGTATTCGAAATGTGGATCTGTGGCCACTGCTCGGTCGATTTTCAACAGGATGAATCACAAGACTGTTGTTTCCTGGAATTCCATGATAGATGGGTATGCACAAAATGAAGATCCTGAGGAAGCAATGGCGATTTTCCAGAAGATGCTCTATGAAGGCTTTGAACCAACCAATGTTACTATTATGGAAGCTTTACATGCTTGTGCTGATTTGGGGGATCTTGAGCGGGGAAAGTTTGTGCATAAATTATTGGATCAACTGAACCTCGGATATGATGTCTCGGTTGTGAATTCTTTGATATCCATGTATTCCAAGTGTAAGAGAGTTGATATTGCTGCAAAATTGTTTAGAGGCTTAAAGGGTAAGACCATCGTCTCATGGAATGCCATGATATTAGGTTTTGCACAGAATGGTCGCGTCAGCGAGGCTTTAAGTCACTTCTGTGAGATGCAATCTCAAAATATAAAGCCAGATTCGTTTACAATGGTGAGTGTAATTCCAGCTCTTGCAGAGTTATCAGTTACACGTCAGGCTAAGTGGATTCATGGACTTGTTGTAAGAAAATGTTTTGACAAAAACGTTTTTGTGATGACTGCTCTTGTTGATATGTACGCGAAATGTGGAGCTGTCCACACTGCAAGAAAACTTTTTGACCTGATGGATGACCGGCATGTGACAACATGGAACAGTATGATCGACGGATATGGAACAAATGGGCTTGGAAAGGCTGCTGTGGAACTGTTCAATGAAATGAAAAAGGGCATAATAAAGCCAAATGATATAACATTTCTATGTGTGATATCCGCTTGTTCTCATTCAGGATTGGTGGAAGACGGTCTTCAATACTTGGAAAGCATGAAGGATGACTATGGCTTGGAGCCTGCAATGGATCACTACGGTGCGATGGTTGATCTTCTTGGTCGAGCTGGCCGACTAAATGAGGCTTGGGATTTTATTCAAAAGATGCCTATGGAACCTGGCATTACAGTCTTTGGTGCAATGTTAGGGGCTTGCAGAATTCATAAAAATGTTGAATTGGGGGAAAAGGCAGCAGATAAAATATTCGAGTTGAACCCTGTTGAAGGTGGGTACCATGTTTTGCTTGCTAACATATATTCCACAGCTTCAATGTGGGACAAAGTGGCCAAAGTGCGAACAACAATGGAGAAGAAAGGGCTCAAGAAAACTCCAGGCTGCAGTTTGGTGGATTTAAAGAACCAAGTTCACACTTTCTATTCTGGAAGTACAAGCCATCCCCAATCCAAGAGAATATATACGTATCTAGAGACACTGGGAGATAAGATCAAGGCTGCTGGTTATGTGCCGGACACAAATTCAATTCATGATGTGGAAGATGATGTCAAGGAGCAATTGCTAAATAGCCATAGTGAGAAGCTGGCTATTGCATTTGGACTCTTGAATACTACCCCGGGTACAACAATACACATTCGAAAGAACCTACGAGTTTGTGGTGATTGCCACAACGCAACCAAGTACATTTCACTAGTAACTGGAAGGGAAATCATAGTGCGTGATATGCATCGGTTCCATCATTTCAGGAATGGAACTTGTTCTTGCGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

831

Amino Acids

92.62

Weight (kDa)

8.34

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	222 - 263	1e-06	PPR repeat family
PPR_2	PF13041	323 - 362	5.5e-10	PPR repeat family
PPR	PF01535	325 - 355	2.5e-09	PPR repeat
PPR_2	PF13041	424 - 471	1.1e-11	PPR repeat family
PPR	PF01535	426 - 456	2.2e-07	PPR repeat
PPR_2	PF13041	526 - 572	2.8e-13	PPR repeat family
PPR	PF01535	528 - 554	5.4e-08	PPR repeat
E_motif	PF20431	642 - 703	8.5e-20	E motif
DYW_deaminase	PF14432	740 - 831	1.9e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11290
fragaria_vesca	FvH4_7g04350
malus_domestica	MD07G1040900.v1.1
prunus_persica	Prupe.2G049000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329341
rosa_laevigata	RLG00000029901
rosa_multiflora	Rmu_co8161036.1_g000001 Rmu_sc0006184.1_g000011 Rmu_sc0039010.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321210
rosa_rugosa	Rorug01G0078700
rosa_samantha	Rh1AG097000 Rh1BG077600 Rh1DG100500
rosa_wichuraiana	Rw1G007520 Rw1G007580

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	740, 854
Acc16I	TGCGCA	1 cut(s)	702
Acc65I	GGTACC	1 cut(s)	1992
AccB1I	GGYRCC	1 cut(s)	1992
AccBSI	CCGCTC	2 cut(s)	893, 1129
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	2 cut(s)	1320, 1517
AciI	CCGC	4 cut(s)	891, 1129, 1707, 2481
AclI	AACGTT	1 cut(s)	1482
AclWI	GGATC	5 cut(s)	928, 1010, 1128, 1164, 1800
AcoI	YGGCCR	4 cut(s)	714, 927, 1831, 2046
AcsI	RAATTY	4 cut(s)	982, 1192, 1920, 2236
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	5 cut(s)	1514, 1994, 2149, 2338, 2399
AfiI	CCNNNNNNNGG	4 cut(s)	414, 523, 936, 1985
AflIII	ACRYGT	2 cut(s)	903, 1427
AhlI	ACTAGT	1 cut(s)	2407
AjiI	CACGTC	1 cut(s)	1430
AjnI	CCWGG	4 cut(s)	716, 977, 1879, 2092
AleI	CACNNNNGTG	2 cut(s)	1344, 1800
Alw21I	GWGCWC	4 cut(s)	8, 204, 225, 273
Alw26I	GTCTC	4 cut(s)	263, 1186, 1282, 2183
AlwI	GGATC	5 cut(s)	928, 1010, 1128, 1164, 1800
Ama87I	CYCGRG	2 cut(s)	197, 2332
AoxI	GGCC	7 cut(s)	420, 714, 757, 764, 927, 1831, 2046
ApeKI	GCWGC	6 cut(s)	692, 1238, 1631, 1952, 2097, 2213
ApoI	RAATTY	4 cut(s)	982, 1192, 1920, 2236
Asp700I	GAANNNNTTC	1 cut(s)	2473
Asp718I	GGTACC	1 cut(s)	1992
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	2 cut(s)	765, 816
AsuC2I	CCSGG	3 cut(s)	335, 2333, 2334
AsuHPI	GGTGA	4 cut(s)	125, 835, 1402, 2387
AsuII	TTCGAA	2 cut(s)	911, 2353
AvaI	CYCGRG	2 cut(s)	197, 2332
AvaII	GGWCC	1 cut(s)	816
AxyI	CCTNAGG	2 cut(s)	518, 1020
BalI	TGGCCA	3 cut(s)	716, 929, 2048
BanI	GGYRCC	1 cut(s)	1992
BanII	GRGCYC	4 cut(s)	8, 204, 225, 2082
BbsI	GAAGAC	2 cut(s)	1733, 1740
Bbv12I	GWGCWC	4 cut(s)	8, 204, 225, 273
BbvI	GCAGC	6 cut(s)	679, 1225, 1618, 1964, 2084, 2200
BccI	CCATC	8 cut(s)	446, 782, 989, 1280, 1555, 1801, 2163, 2460
BceAI	ACGGC	2 cut(s)	328, 332
BciT130I	CCWGG	4 cut(s)	718, 979, 1881, 2094
BcnI	CCSGG	3 cut(s)	335, 2333, 2334
BcoDI	GTCTC	4 cut(s)	263, 1186, 1282, 2183
BcuI	ACTAGT	1 cut(s)	2407
BfaI	CTAG	5 cut(s)	93, 861, 899, 2186, 2408
BfmI	CTRYAG	2 cut(s)	183, 2098
BisI	GCNGC	6 cut(s)	693, 1239, 1632, 1953, 2098, 2214
BlsI	GCNGC	6 cut(s)	694, 1240, 1633, 1954, 2099, 2215
Bme1390I	CCNGG	7 cut(s)	335, 718, 979, 1881, 2094, 2333, 2334
Bme18I	GGWCC	1 cut(s)	816
BmeT110I	CYCGRG	2 cut(s)	197, 2332
BmgBI	CACGTC	1 cut(s)	1430
BmgT120I	GGNCC	2 cut(s)	765, 816
BmiI	GGNNCC	5 cut(s)	817, 1782, 1878, 1994, 2450
BmrFI	CCNGG	7 cut(s)	335, 718, 979, 1881, 2094, 2333, 2334
BmrI	ACTGGG	1 cut(s)	2204
BmsI	GCATC	6 cut(s)	619, 735, 1038, 1341, 1857, 2452
BmuI	ACTGGG	1 cut(s)	2204
BoxI	GACNNNNGTC	1 cut(s)	1274
BpiI	GAAGAC	2 cut(s)	1733, 1740
BpmI	CTGGAG	1 cut(s)	2076
Bpu14I	TTCGAA	2 cut(s)	911, 2353
BpuEI	CTTGAG	3 cut(s)	476, 1145, 2066
BpuMI	CCSGG	3 cut(s)	335, 2333, 2334
BsaAI	YACGTR	1 cut(s)	2181
BsaBI	GATNNNNATC	1 cut(s)	2442
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	4 cut(s)	819, 1168, 2331, 2332
BsaWI	WCCGGW	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	4 cut(s)	414, 523, 936, 1985
Bse118I	RCCGGY	2 cut(s)	438, 1569
Bse1I	ACTGG	3 cut(s)	20, 2199, 2419
Bse21I	CCTNAGG	2 cut(s)	518, 1020
Bse3DI	GCAATG	4 cut(s)	791, 1035, 1794, 1908
Bse8I	GATNNNNATC	1 cut(s)	2442
BseBI	CCWGG	4 cut(s)	718, 979, 1881, 2094
BseDI	CCNNGG	4 cut(s)	819, 1168, 2331, 2332
BseGI	GGATG	5 cut(s)	750, 960, 1570, 1771, 2155
BseJI	GATNNNNATC	1 cut(s)	2442
BseLI	CCNNNNNNNGG	4 cut(s)	414, 523, 936, 1985
BseMI	GCAATG	4 cut(s)	791, 1035, 1794, 1908
BseMII	CTCAG	3 cut(s)	532, 648, 1011
BseNI	ACTGG	3 cut(s)	20, 2199, 2419
BseRI	GAGGAG	2 cut(s)	185, 397
BseXI	GCAGC	6 cut(s)	679, 1225, 1618, 1964, 2084, 2200
BsgI	GTGCAG	1 cut(s)	190
Bsh1236I	CGCG	2 cut(s)	1320, 1517
Bsh1285I	CGRYCG	1 cut(s)	941
BshFI	GGCC	7 cut(s)	422, 716, 759, 766, 929, 1833, 2048
BshNI	GGYRCC	1 cut(s)	1992
BsiEI	CGRYCG	1 cut(s)	941
BsiHKAI	GWGCWC	4 cut(s)	8, 204, 225, 273
BsiHKCI	CYCGRG	2 cut(s)	197, 2332
BsiSI	CCGG	6 cut(s)	334, 439, 588, 1570, 2228, 2333
BslFI	GGGAC	3 cut(s)	368, 677, 2051
BslI	CCNNNNNNNGG	4 cut(s)	414, 523, 936, 1985
BsmAI	GTCTC	4 cut(s)	263, 1186, 1282, 2183
BsmBI	CGTCTC	1 cut(s)	1282
BsmFI	GGGAC	3 cut(s)	368, 677, 2051
BsmI	GAATGC	2 cut(s)	657, 1291
BsnI	GGCC	7 cut(s)	422, 716, 759, 766, 929, 1833, 2048
Bso31I	GGTCTC	1 cut(s)	263
BsoBI	CYCGRG	2 cut(s)	197, 2332
Bsp119I	TTCGAA	2 cut(s)	911, 2353
Bsp1286I	GDGCHC	5 cut(s)	8, 204, 225, 273, 2082
Bsp143I	GATC	9 cut(s)	825, 920, 1015, 1120, 1156, 1596, 1792, 1813, 2205
BspACI	CCGC	4 cut(s)	891, 1129, 1707, 2481
BspANI	GGCC	7 cut(s)	422, 716, 759, 766, 929, 1833, 2048
BspCNI	CTCAG	3 cut(s)	531, 649, 1012
BspFNI	CGCG	2 cut(s)	1320, 1517
BspHI	TCATGA	1 cut(s)	2245
BspLI	GGNNCC	5 cut(s)	817, 1782, 1878, 1994, 2450
BspMAI	CTGCAG	1 cut(s)	2102
BspPI	GGATC	5 cut(s)	928, 1010, 1128, 1164, 1800
BspQI	GCTCTTC	1 cut(s)	900
BspT104I	TTCGAA	2 cut(s)	911, 2353
BspT107I	GGYRCC	1 cut(s)	1992
BspTNI	GGTCTC	1 cut(s)	263
BsrBI	CCGCTC	2 cut(s)	893, 1129
BsrDI	GCAATG	4 cut(s)	791, 1035, 1794, 1908
BsrFI	RCCGGY	2 cut(s)	438, 1569
BsrI	ACTGG	3 cut(s)	20, 2199, 2419
BssAI	RCCGGY	2 cut(s)	438, 1569
BssECI	CCNNGG	4 cut(s)	819, 1168, 2331, 2332
BssMI	GATC	9 cut(s)	825, 920, 1015, 1120, 1156, 1596, 1792, 1813, 2205
BssNI	GRCGYC	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	819
Bst2UI	CCWGG	4 cut(s)	718, 979, 1881, 2094
Bst4CI	ACNGT	7 cut(s)	257, 970, 1592, 1644, 1739, 1802, 1891
Bst6I	CTCTTC	2 cut(s)	305, 900
BstACI	GRCGYC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstBAI	YACGTR	1 cut(s)	2181
BstBI	TTCGAA	2 cut(s)	911, 2353
BstC8I	GCNNGC	6 cut(s)	798, 1785, 1831, 1915, 2007, 2301
BstDEI	CTNAG	5 cut(s)	518, 609, 657, 1020, 1437
BstENI	CCTNNNNNAGG	1 cut(s)	1983
BstF5I	GGATG	5 cut(s)	750, 960, 1570, 1771, 2155
BstFNI	CGCG	2 cut(s)	1320, 1517
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	9 cut(s)	828, 923, 1018, 1123, 1159, 1599, 1795, 1816, 2208
BstMAI	GTCTC	4 cut(s)	263, 1186, 1282, 2183
BstMBI	GATC	9 cut(s)	825, 920, 1015, 1120, 1156, 1596, 1792, 1813, 2205
BstMCI	CGRYCG	1 cut(s)	941
BstMWI	GCNNNNNNNGC	7 cut(s)	303, 312, 698, 722, 797, 1100, 2440
BstNI	CCWGG	4 cut(s)	718, 979, 1881, 2094
BstNSI	RCATGY	3 cut(s)	907, 1103, 1577
BstPAI	GACNNNNGTC	1 cut(s)	1274
BstSCI	CCNGG	7 cut(s)	333, 716, 977, 1879, 2092, 2331, 2332
BstSFI	CTRYAG	2 cut(s)	183, 2098
BstSNI	TACGTA	1 cut(s)	2181
BstUI	CGCG	2 cut(s)	1320, 1517
BstV1I	GCAGC	6 cut(s)	679, 1225, 1618, 1964, 2084, 2200
BstV2I	GAAGAC	2 cut(s)	1733, 1740
BstX2I	RGATCY	3 cut(s)	920, 1015, 1120
BstXI	CCANNNNNNTGG	1 cut(s)	781
BstYI	RGATCY	3 cut(s)	920, 1015, 1120
Bsu36I	CCTNAGG	2 cut(s)	518, 1020
BsuRI	GGCC	7 cut(s)	422, 716, 759, 766, 929, 1833, 2048
BtgZI	GCGATG	2 cut(s)	596, 1820
BtrI	CACGTC	1 cut(s)	1430
BtsCI	GGATG	5 cut(s)	750, 960, 1570, 1771, 2155
BtsI	GCAGTG	3 cut(s)	786, 930, 1536
BtsIMutI	CAGTG	4 cut(s)	786, 930, 1536, 2192
Cac8I	GCNNGC	6 cut(s)	798, 1785, 1831, 1915, 2007, 2301
CciI	TCATGA	1 cut(s)	2245
CfoI	GCGC	1 cut(s)	703
Cfr10I	RCCGGY	2 cut(s)	438, 1569
Cfr13I	GGNCC	2 cut(s)	765, 816
Cfr9I	CCCGGG	1 cut(s)	2332
CseI	GACGC	2 cut(s)	353, 1309
Csp6I	GTAC	5 cut(s)	1513, 1993, 2148, 2337, 2398
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviQI	GTAC	5 cut(s)	1513, 1993, 2148, 2337, 2398
DdeI	CTNAG	5 cut(s)	518, 609, 657, 1020, 1437
DpnI	GATC	9 cut(s)	827, 922, 1017, 1122, 1158, 1598, 1794, 1815, 2207
DpnII	GATC	9 cut(s)	825, 920, 1015, 1120, 1156, 1596, 1792, 1813, 2205
DraI	TTTAAA	1 cut(s)	2115
EaeI	YGGCCR	4 cut(s)	714, 927, 1831, 2046
Eam1104I	CTCTTC	2 cut(s)	305, 900
EarI	CTCTTC	2 cut(s)	305, 900
Ecl136II	GAGCTC	3 cut(s)	6, 202, 223
Eco105I	TACGTA	1 cut(s)	2181
Eco130I	CCWWGG	1 cut(s)	819
Eco24I	GRGCYC	4 cut(s)	8, 204, 225, 2082
Eco31I	GGTCTC	1 cut(s)	263
Eco32I	GATATC	2 cut(s)	1203, 1704
Eco47I	GGWCC	1 cut(s)	816
Eco53kI	GAGCTC	3 cut(s)	6, 202, 223
Eco81I	CCTNAGG	2 cut(s)	518, 1020
Eco88I	CYCGRG	2 cut(s)	197, 2332
EcoICRI	GAGCTC	3 cut(s)	6, 202, 223
EcoNI	CCTNNNNNAGG	1 cut(s)	1983
EcoO109I	RGGNCCY	1 cut(s)	816
EcoRI	GAATTC	3 cut(s)	982, 1192, 1920
EcoRII	CCWGG	4 cut(s)	716, 977, 1879, 2092
EcoRV	GATATC	2 cut(s)	1203, 1704
EcoT14I	CCWWGG	1 cut(s)	819
EcoT22I	ATGCAT	2 cut(s)	634, 2445
EcoT38I	GRGCYC	4 cut(s)	8, 204, 225, 2082
ErhI	CCWWGG	1 cut(s)	819
Esp3I	CGTCTC	1 cut(s)	1282
FalI	AAGNNNNNCTT	2 cut(s)	1725, 1757
FaqI	GGGAC	3 cut(s)	368, 677, 2051
FauI	CCCGC	1 cut(s)	1122
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	6 cut(s)	693, 1239, 1632, 1953, 2098, 2214
FokI	GGATG	5 cut(s)	757, 967, 1577, 1778, 2142
FriOI	GRGCYC	4 cut(s)	8, 204, 225, 2082
Fsp4HI	GCNGC	6 cut(s)	693, 1239, 1632, 1953, 2098, 2214
FspBI	CTAG	5 cut(s)	93, 861, 899, 2186, 2408
FspI	TGCGCA	1 cut(s)	702
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	6 cut(s)	693, 1239, 1632, 1953, 2098, 2214
GsuI	CTGGAG	1 cut(s)	2076
HaeIII	GGCC	7 cut(s)	422, 716, 759, 766, 929, 1833, 2048
HapII	CCGG	6 cut(s)	334, 439, 588, 1570, 2228, 2333
HgaI	GACGC	2 cut(s)	353, 1309
HhaI	GCGC	1 cut(s)	703
Hin1I	GRCGYC	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HindIII	AAGCTT	1 cut(s)	1092
HinfI	GANTC	8 cut(s)	535, 770, 838, 869, 958, 1376, 1444, 2316
HpaII	CCGG	6 cut(s)	334, 439, 588, 1570, 2228, 2333
HphI	GGTGA	4 cut(s)	125, 835, 1402, 2387
Hpy166II	GTNNAC	6 cut(s)	172, 598, 880, 1383, 1534, 2128
Hpy188I	TCNGA	3 cut(s)	549, 830, 1172
Hpy8I	GTNNAC	6 cut(s)	172, 598, 880, 1383, 1534, 2128
Hpy99I	CGWCG	4 cut(s)	347, 353, 368, 1604
HpyAV	CCTTC	8 cut(s)	171, 439, 523, 749, 1052, 1756, 1979, 2412
HpyCH4III	ACNGT	7 cut(s)	257, 970, 1592, 1644, 1739, 1802, 1891
HpyCH4IV	ACGT	4 cut(s)	366, 1429, 1482, 2180
HpyF10VI	GCNNNNNNNGC	7 cut(s)	303, 312, 698, 722, 797, 1100, 2440
HpyF3I	CTNAG	5 cut(s)	518, 609, 657, 1020, 1437
HpySE526I	ACGT	4 cut(s)	366, 1429, 1482, 2180
Hsp92I	GRCGYC	1 cut(s)	345
HspAI	GCGC	1 cut(s)	701
KpnI	GGTACC	1 cut(s)	1996
Kzo9I	GATC	9 cut(s)	825, 920, 1015, 1120, 1156, 1596, 1792, 1813, 2205
LguI	GCTCTTC	1 cut(s)	900
LmnI	GCTCC	4 cut(s)	228, 1526, 1780, 2269
Lsp1109I	GCAGC	6 cut(s)	679, 1225, 1618, 1964, 2084, 2200
LweI	GCATC	6 cut(s)	619, 735, 1038, 1341, 1857, 2452
MaeI	CTAG	5 cut(s)	93, 861, 899, 2186, 2408
MaeII	ACGT	4 cut(s)	366, 1429, 1482, 2180
MaeIII	GTNAC	8 cut(s)	22, 784, 870, 1078, 1337, 1423, 1576, 2410
MalI	GATC	9 cut(s)	827, 922, 1017, 1122, 1158, 1598, 1794, 1815, 2207
MbiI	CCGCTC	2 cut(s)	893, 1129
MboI	GATC	9 cut(s)	825, 920, 1015, 1120, 1156, 1596, 1792, 1813, 2205
MfeI	CAATTG	2 cut(s)	321, 2273
MflI	RGATCY	3 cut(s)	920, 1015, 1120
MhlI	GDGCHC	5 cut(s)	8, 204, 225, 273, 2082
MlsI	TGGCCA	3 cut(s)	716, 929, 2048
MluNI	TGGCCA	3 cut(s)	716, 929, 2048
MlyI	GAGTC	2 cut(s)	878, 2310
Mox20I	TGGCCA	3 cut(s)	716, 929, 2048
Mph1103I	ATGCAT	2 cut(s)	634, 2445
MroXI	GAANNNNTTC	1 cut(s)	2473
MscI	TGGCCA	3 cut(s)	716, 929, 2048
MseI	TTAA	4 cut(s)	387, 1259, 1334, 2114
MslI	CAYNNNNRTG	7 cut(s)	212, 846, 1104, 1344, 1693, 1800, 1929
Msp20I	TGGCCA	3 cut(s)	716, 929, 2048
MspI	CCGG	6 cut(s)	334, 439, 588, 1570, 2228, 2333
MspR9I	CCNGG	7 cut(s)	335, 718, 979, 1881, 2094, 2333, 2334
MunI	CAATTG	2 cut(s)	321, 2273
Mva1269I	GAATGC	2 cut(s)	657, 1291
MvaI	CCWGG	4 cut(s)	718, 979, 1881, 2094
MvnI	CGCG	2 cut(s)	1320, 1517
MwoI	GCNNNNNNNGC	7 cut(s)	303, 312, 698, 722, 797, 1100, 2440
NciI	CCSGG	3 cut(s)	335, 2333, 2334
NdeII	GATC	9 cut(s)	825, 920, 1015, 1120, 1156, 1596, 1792, 1813, 2205
NlaIV	GGNNCC	5 cut(s)	817, 1782, 1878, 1994, 2450
NmuCI	GTSAC	5 cut(s)	22, 784, 870, 1337, 1576
NsbI	TGCGCA	1 cut(s)	702
NsiI	ATGCAT	2 cut(s)	634, 2445
NspI	RCATGY	3 cut(s)	907, 1103, 1577
NspV	TTCGAA	2 cut(s)	911, 2353
OliI	CACNNNNGTG	2 cut(s)	1344, 1800
PaeR7I	CTCGAG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	2245
PciI	ACATGT	1 cut(s)	903
PciSI	GCTCTTC	1 cut(s)	900
PcsI	WCGNNNNNNNCGW	1 cut(s)	1831
PctI	GAATGC	2 cut(s)	657, 1291
PdmI	GAANNNNTTC	1 cut(s)	2473
PfeI	GAWTC	6 cut(s)	535, 770, 838, 958, 1376, 1444
PflFI	GACNNNGTC	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	977
PkrI	GCNGC	6 cut(s)	694, 1240, 1633, 1954, 2099, 2215
PleI	GAGTC	2 cut(s)	877, 2310
PpsI	GAGTC	2 cut(s)	877, 2310
Ppu21I	YACGTR	1 cut(s)	2181
PpuMI	RGGWCCY	1 cut(s)	816
PscI	ACATGT	1 cut(s)	903
PshAI	GACNNNNGTC	1 cut(s)	1274
PsiI	TTATAA	2 cut(s)	740, 854
Psp124BI	GAGCTC	3 cut(s)	8, 204, 225
Psp1406I	AACGTT	1 cut(s)	1482
Psp5II	RGGWCCY	1 cut(s)	816
Psp6I	CCWGG	4 cut(s)	716, 977, 1879, 2092
PspGI	CCWGG	4 cut(s)	716, 977, 1879, 2092
PspN4I	GGNNCC	5 cut(s)	817, 1782, 1878, 1994, 2450
PspPI	GGNCC	2 cut(s)	765, 816
PspPPI	RGGWCCY	1 cut(s)	816
PspXI	VCTCGAGB	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	2102
PsuI	RGATCY	3 cut(s)	920, 1015, 1120
PsyI	GACNNNGTC	1 cut(s)	347
RsaI	GTAC	5 cut(s)	1514, 1994, 2149, 2338, 2399
RsaNI	GTAC	5 cut(s)	1513, 1993, 2148, 2337, 2398
RseI	CAYNNNNRTG	7 cut(s)	212, 846, 1104, 1344, 1693, 1800, 1929
SacI	GAGCTC	3 cut(s)	8, 204, 225
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	4 cut(s)	387, 1259, 1334, 2114
SatI	GCNGC	6 cut(s)	693, 1239, 1632, 1953, 2098, 2214
Sau3AI	GATC	9 cut(s)	825, 920, 1015, 1120, 1156, 1596, 1792, 1813, 2205
Sau96I	GGNCC	2 cut(s)	765, 816
SchI	GAGTC	2 cut(s)	878, 2310
ScrFI	CCNGG	7 cut(s)	335, 718, 979, 1881, 2094, 2333, 2334
SduI	GDGCHC	5 cut(s)	8, 204, 225, 273, 2082
SfaNI	GCATC	6 cut(s)	619, 735, 1038, 1341, 1857, 2452
SfcI	CTRYAG	2 cut(s)	183, 2098
Sfr274I	CTCGAG	1 cut(s)	197
SfuI	TTCGAA	2 cut(s)	911, 2353
SinI	GGWCC	1 cut(s)	816
SlaI	CTCGAG	1 cut(s)	197
SmaI	CCCGGG	1 cut(s)	2334
SmiMI	CAYNNNNRTG	7 cut(s)	212, 846, 1104, 1344, 1693, 1800, 1929
SmlI	CTYRAG	4 cut(s)	197, 491, 1124, 2081
SmoI	CTYRAG	4 cut(s)	197, 491, 1124, 2081
SnaBI	TACGTA	1 cut(s)	2181
SpeI	ACTAGT	1 cut(s)	2407
SsiI	CCGC	4 cut(s)	891, 1129, 1707, 2481
SspI	AATATT	1 cut(s)	1965
SspMI	CTAG	5 cut(s)	93, 861, 899, 2186, 2408
SstI	GAGCTC	3 cut(s)	8, 204, 225
StyD4I	CCNGG	7 cut(s)	333, 716, 977, 1879, 2092, 2331, 2332
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	7 cut(s)	257, 970, 1592, 1644, 1739, 1802, 1891
TaiI	ACGT	4 cut(s)	369, 1432, 1485, 2183
TaqII	GACCGA	1 cut(s)	927
TatI	WGTACW	2 cut(s)	2147, 2397
TfiI	GAWTC	6 cut(s)	535, 770, 838, 958, 1376, 1444
Tru1I	TTAA	4 cut(s)	387, 1259, 1334, 2114
Tru9I	TTAA	4 cut(s)	387, 1259, 1334, 2114
TscAI	CASTG	4 cut(s)	793, 937, 1543, 2199
TseFI	GTSAC	5 cut(s)	22, 784, 870, 1337, 1576
TseI	GCWGC	6 cut(s)	692, 1238, 1631, 1952, 2097, 2213
Tsp45I	GTSAC	5 cut(s)	22, 784, 870, 1337, 1576
TspGWI	ACGGA	1 cut(s)	1617
TspMI	CCCGGG	1 cut(s)	2332
TspRI	CASTG	4 cut(s)	793, 937, 1543, 2199
Tth111I	GACNNNGTC	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	816
XagI	CCTNNNNNAGG	1 cut(s)	1983
XapI	RAATTY	4 cut(s)	982, 1192, 1920, 2236
XbaI	TCTAGA	2 cut(s)	898, 2185
XceI	RCATGY	3 cut(s)	907, 1103, 1577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XhoI	CTCGAG	1 cut(s)	197
XmaI	CCCGGG	1 cut(s)	2332
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	2473
XspI	CTAG	5 cut(s)	93, 861, 899, 2186, 2408
Zsp2I	ATGCAT	2 cut(s)	634, 2445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.