Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015494

Physical Location & Seq

Genomic Coordinates Reverse (-)

51041126 .. 51043606

Gene Structure 2481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2481 bp

ATGAGCTCACAGCTCTTGCCAGTCACACCTCTGCTCTCCATAACCAACACCAAAACACCATCACCACCACCACCAATATCAACTAGACTTCCAATACCAACATCAACATCAACATTTCACCAGCTTTCCCAAAGAAGCCACATTCCTTCTCATGTCTACAAGCACCCTACAGCCATACTCCTCGAGCTCTGCACTTCTATGAGAGAGCTCCACCAAATCTTCCCCCTCATAATCAAGAACGGTCTCTACAACGAGCACTACTTCCAGACCAAGCTCGTCAGCCTATTCTGCAAATACGGCAGCCCAATAGAAGCCCACCGAGTTTTCGACGCCGTCGGGGACAAACTCGACGTTTTCTACCACACTCTGCTCAAAGGGTATGCCAAGAACTCCTCTTTAGGGGAGGCCATTTCCTTCTTTTGCCGATTGAAGCATGATGGGGTTGCCCCTGTTGTGTACAATTTTACTTACTTGCTCAAGGCGTGTGGCGATAATGCTGACCTGAGGAGGGGGAAGGAGATTCATGGCTCTCTAATTACCAATGGCTTTGCTACTAATCTGTTTGCGATGACCGGAGTTGTGAATTTGTATGCCAAGTGTAGGCAGATTGATGATGCATACAAGATGTTCGATAGAATGCCTGAGAGGGACTTGGTTTCTTGGAACACTATTGTTGCTGCTTATGCGCAAAATGGGTTGGCCAGGAGAGCTTTGGAGTTGGTTATAAGGATGCAGGAGGAAGGCCAGAGGCCCGATTCCATCACATTGGTCACTGCACTGCCTGCTGTTGCCGATTTTGGGTCCTTGGTGATCGGAAAGTCGATTCATGCCTATGTTATAAGAGCCAGTTTTGAGTCACTTGTGAACATTTCTACCGCTCTGCTAGACATGTATTCGAAATGTGGATCTGTGGGCACTGCTCGGTCGATTTTCAACAGGATGAATCACAAGACTGTTGTTTCCTGGAATTCTATGATAGATGGGTATGTACAAAATGAAGATCCTGAGGAAGCAATGGCGATTTTCCAGAAGATGCTGGATGAAGGCTTTGAACCAACCAATGTTACTATTATGGAAGCTTTACATGCTTGTGCTGATTTGGGGGATCTTGAGCGGGGAAAGTTTGTGCATAAATTATTGGATCAACTGAACCTCGGATATGATGTCTCAGTTGTGAATTCTTTGATATCCATGTATTCCAAATGTAAGAGAGTTGATATCGCTGCAAAATTGTTTAGAGGCTTAAAAGGTAAGACCATTGTCTCTTGGAATGCCATGATATTAGGTTTTGCACAGAATGGTTGCATCAGCCAGGCTTTAAGTCACTTCTGTGAGATGCAATCTCAAAATATAAAGCCAGATTCGTTTACAATGGTGAGTGTAATTCCAGCTCTTGCAGAGTTATCAGTTACACGTCAGGCTAAGTGGATTCATGGACTTGTTGTAAGAAAATGTTTTGACAAAAACGTTTTTGTGATGACTGCATTTGTTGATATGTATGCAAAATGTGGAGCTGTCCACACTGCAAGAAAACTTTTTGACATGATGGATGACCGGCATGTGACAACATGGAACAGTATGATCGATGGATATGGAACACATGGGCTTGGAAAGGCTGCTGTGGAACTGTTCAATGAAATGAAAAAGGGCATAATAAAGCCAAATGATATAACATTTCTATGTGTGATATCCGCTTGTTCTCATTCAGGATTGGTGGAAGACGGTCTTCAATACTTTGAAAGCATGAAGGATGACTATGGCTTGGAGCCTGCAATGGATCACTATGGTGCCATGGTTGATCTTCTTGGTCGAGCTGGCCGACTAAATGAAGCTTGGGATTTTATTCAAAAGATGCCTATGGAACCTGGCATTACAGTCTTTGGTGCAATGTTAGGGGCTTGCAGAATTCATAAAAATGTTGAATTGGGGGAAAAGGCAGCAGATAAAATATTCGAGTTGAACCCTGTTGAAGGTGGGTACCATGTTTTGCTTGCTAACATATATTCCACAGCTTCAATGTGGGACAAAGTGGCCAAAGTGCGAACAACAATGGAGAAGAAAGGGCTCAAGAAAACTCCAGGCTGCAGTTTGGTGGATTTAAAGAACCAAGTTCACACTTTCTATTCTGGAAGTACAAGCCATCCCCAATCCAAGAGAATATATACGTATCTGGAGACACTGGGAGATAAGATCAAGGCTGCTGGTTATGTGCCGGACACAAATTCAATTCATGATGTGGAAGATGATGTCAAGGAGCAATTGCTAAATAGCCATAGTGAGAAGCTGGCTATTGCATTTGGACTCTTGAATACTACCCCGGGTACAACAATACACATTCGAAAGAACCTACGAGTTTGTGGTGATTGCCACAACGCAACCAAGTACATTTCACTAGTAACTGGAAGGGAAATCATAGTGCGTGATATGCATCGGTTCCATCATTTCAGGAATGGAACTTGTTCTTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

827

Amino Acids

92.17

Weight (kDa)

8.23

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	217 - 258	1e-06	PPR repeat family
PPR_2	PF13041	318 - 357	9e-11	PPR repeat family
PPR	PF01535	320 - 350	1.1e-09	PPR repeat
PPR_2	PF13041	419 - 466	2.1e-10	PPR repeat family
PPR	PF01535	421 - 451	6.8e-06	PPR repeat
PPR_2	PF13041	521 - 567	3.7e-13	PPR repeat family
PPR	PF01535	523 - 549	7.1e-08	PPR repeat
E_motif	PF20431	637 - 698	8.4e-20	E motif
DYW_deaminase	PF14432	735 - 826	1.9e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11290
fragaria_vesca	FvH4_7g04350
malus_domestica	MD07G1040900.v1.1
prunus_persica	Prupe.2G049000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329341
rosa_laevigata	RLG00000029901
rosa_multiflora	Rmu_co8161036.1_g000001 Rmu_sc0006184.1_g000011 Rmu_sc0039010.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321210
rosa_rugosa	Rorug01G0078700
rosa_samantha	Rh1AG097000 Rh1BG077600 Rh1DG100500
rosa_wichuraiana	Rw1G007520 Rw1G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	725, 839
Acc16I	TGCGCA	1 cut(s)	687
Acc65I	GGTACC	1 cut(s)	1977
AccB1I	GGYRCC	2 cut(s)	1787, 1977
AccBSI	CCGCTC	2 cut(s)	878, 1114
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	876, 1114, 1692
AclI	AACGTT	1 cut(s)	1467
AclWI	GGATC	5 cut(s)	913, 995, 1113, 1149, 1785
AcoI	YGGCCR	3 cut(s)	699, 1816, 2031
AcsI	RAATTY	5 cut(s)	583, 967, 1177, 1905, 2221
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	6 cut(s)	458, 990, 1979, 2134, 2323, 2384
AfiI	CCNNNNNNNGG	5 cut(s)	399, 508, 600, 798, 1970
AflIII	ACRYGT	2 cut(s)	888, 1412
AhlI	ACTAGT	1 cut(s)	2392
AjiI	CACGTC	1 cut(s)	1415
AjnI	CCWGG	5 cut(s)	701, 962, 1311, 1864, 2077
AleI	CACNNNNGTG	2 cut(s)	1329, 1785
Alw21I	GWGCWC	4 cut(s)	8, 189, 210, 258
Alw26I	GTCTC	4 cut(s)	248, 1171, 1267, 2168
AlwI	GGATC	5 cut(s)	913, 995, 1113, 1149, 1785
Ama87I	CYCGRG	2 cut(s)	182, 2317
AoxI	GGCC	6 cut(s)	405, 699, 742, 749, 1816, 2031
ApeKI	GCWGC	7 cut(s)	300, 677, 1223, 1616, 1937, 2082, 2198
ApoI	RAATTY	5 cut(s)	583, 967, 1177, 1905, 2221
Asp700I	GAANNNNTTC	1 cut(s)	2458
Asp718I	GGTACC	1 cut(s)	1977
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	750, 801
AsuC2I	CCSGG	2 cut(s)	2318, 2319
AsuHPI	GGTGA	5 cut(s)	54, 110, 820, 1387, 2372
AsuII	TTCGAA	2 cut(s)	896, 2338
AvaI	CYCGRG	2 cut(s)	182, 2317
AvaII	GGWCC	1 cut(s)	801
AxyI	CCTNAGG	2 cut(s)	503, 1005
BaeGI	GKGCMC	1 cut(s)	917
BalI	TGGCCA	2 cut(s)	701, 2033
BanI	GGYRCC	2 cut(s)	1787, 1977
BanII	GRGCYC	4 cut(s)	8, 189, 210, 2067
BbsI	GAAGAC	2 cut(s)	1718, 1725
Bbv12I	GWGCWC	4 cut(s)	8, 189, 210, 258
BbvI	GCAGC	7 cut(s)	312, 664, 1210, 1603, 1949, 2069, 2185
BccI	CCATC	8 cut(s)	67, 431, 767, 974, 1540, 1580, 2148, 2445
BceAI	ACGGC	2 cut(s)	313, 317
BciT130I	CCWGG	5 cut(s)	703, 964, 1313, 1866, 2079
BcnI	CCSGG	2 cut(s)	2318, 2319
BcoDI	GTCTC	4 cut(s)	248, 1171, 1267, 2168
BcuI	ACTAGT	1 cut(s)	2392
BfaI	CTAG	3 cut(s)	84, 884, 2393
BfmI	CTRYAG	2 cut(s)	168, 2083
BisI	GCNGC	7 cut(s)	301, 678, 1224, 1617, 1938, 2083, 2199
BlsI	GCNGC	7 cut(s)	302, 679, 1225, 1618, 1939, 2084, 2200
Bme1390I	CCNGG	7 cut(s)	703, 964, 1313, 1866, 2079, 2318, 2319
Bme18I	GGWCC	1 cut(s)	801
BmeT110I	CYCGRG	2 cut(s)	182, 2317
BmgBI	CACGTC	1 cut(s)	1415
BmgT120I	GGNCC	2 cut(s)	750, 801
BmiI	GGNNCC	6 cut(s)	802, 1767, 1789, 1863, 1979, 2435
BmrFI	CCNGG	7 cut(s)	703, 964, 1313, 1866, 2079, 2318, 2319
BmrI	ACTGGG	1 cut(s)	2189
BmsI	GCATC	7 cut(s)	604, 720, 1023, 1314, 1326, 1842, 2437
BmuI	ACTGGG	1 cut(s)	2189
BoxI	GACNNNNGTC	1 cut(s)	1259
BpiI	GAAGAC	2 cut(s)	1718, 1725
BpmI	CTGGAG	2 cut(s)	2061, 2192
Bpu14I	TTCGAA	2 cut(s)	896, 2338
BpuEI	CTTGAG	3 cut(s)	461, 1130, 2051
BpuMI	CCSGG	2 cut(s)	2318, 2319
Bsa29I	ATCGAT	1 cut(s)	1584
BsaAI	YACGTR	1 cut(s)	2166
BsaBI	GATNNNNATC	1 cut(s)	2427
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	5 cut(s)	804, 1153, 1791, 2316, 2317
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	5 cut(s)	399, 508, 600, 798, 1970
Bse118I	RCCGGY	1 cut(s)	1554
Bse1I	ACTGG	4 cut(s)	20, 846, 2184, 2404
Bse21I	CCTNAGG	2 cut(s)	503, 1005
Bse3DI	GCAATG	3 cut(s)	1020, 1779, 1893
Bse8I	GATNNNNATC	1 cut(s)	2427
BseBI	CCWGG	5 cut(s)	703, 964, 1313, 1866, 2079
BseCI	ATCGAT	1 cut(s)	1584
BseDI	CCNNGG	5 cut(s)	804, 1153, 1791, 2316, 2317
BseGI	GGATG	6 cut(s)	735, 945, 1045, 1555, 1756, 2140
BseJI	GATNNNNATC	1 cut(s)	2427
BseLI	CCNNNNNNNGG	5 cut(s)	399, 508, 600, 798, 1970
BseMI	GCAATG	3 cut(s)	1020, 1779, 1893
BseMII	CTCAG	4 cut(s)	494, 633, 996, 1182
BseNI	ACTGG	4 cut(s)	20, 846, 2184, 2404
BseRI	GAGGAG	3 cut(s)	170, 382, 520
BseSI	GKGCMC	1 cut(s)	917
BseXI	GCAGC	7 cut(s)	312, 664, 1210, 1603, 1949, 2069, 2185
BsgI	GTGCAG	2 cut(s)	175, 759
Bsh1285I	CGRYCG	1 cut(s)	926
BshFI	GGCC	6 cut(s)	407, 701, 744, 751, 1818, 2033
BshNI	GGYRCC	2 cut(s)	1787, 1977
BshVI	ATCGAT	1 cut(s)	1584
BsiEI	CGRYCG	1 cut(s)	926
BsiHKAI	GWGCWC	4 cut(s)	8, 189, 210, 258
BsiHKCI	CYCGRG	2 cut(s)	182, 2317
BsiSI	CCGG	4 cut(s)	573, 1555, 2213, 2318
BslFI	GGGAC	3 cut(s)	353, 662, 2036
BslI	CCNNNNNNNGG	5 cut(s)	399, 508, 600, 798, 1970
BsmAI	GTCTC	4 cut(s)	248, 1171, 1267, 2168
BsmFI	GGGAC	3 cut(s)	353, 662, 2036
BsmI	GAATGC	2 cut(s)	642, 1276
BsnI	GGCC	6 cut(s)	407, 701, 744, 751, 1818, 2033
Bso31I	GGTCTC	1 cut(s)	248
BsoBI	CYCGRG	2 cut(s)	182, 2317
Bsp119I	TTCGAA	2 cut(s)	896, 2338
Bsp1286I	GDGCHC	6 cut(s)	8, 189, 210, 258, 917, 2067
Bsp1407I	TGTACA	2 cut(s)	456, 988
Bsp143I	GATC	9 cut(s)	810, 905, 1000, 1105, 1141, 1581, 1777, 1798, 2190
Bsp19I	CCATGG	1 cut(s)	1791
BspACI	CCGC	3 cut(s)	876, 1114, 1692
BspANI	GGCC	6 cut(s)	407, 701, 744, 751, 1818, 2033
BspCNI	CTCAG	4 cut(s)	495, 634, 997, 1181
BspDI	ATCGAT	1 cut(s)	1584
BspHI	TCATGA	1 cut(s)	2230
BspLI	GGNNCC	6 cut(s)	802, 1767, 1789, 1863, 1979, 2435
BspMAI	CTGCAG	1 cut(s)	2087
BspPI	GGATC	5 cut(s)	913, 995, 1113, 1149, 1785
BspT104I	TTCGAA	2 cut(s)	896, 2338
BspT107I	GGYRCC	2 cut(s)	1787, 1977
BspTNI	GGTCTC	1 cut(s)	248
BsrBI	CCGCTC	2 cut(s)	878, 1114
BsrDI	GCAATG	3 cut(s)	1020, 1779, 1893
BsrFI	RCCGGY	1 cut(s)	1554
BsrGI	TGTACA	2 cut(s)	456, 988
BsrI	ACTGG	4 cut(s)	20, 846, 2184, 2404
BssAI	RCCGGY	1 cut(s)	1554
BssECI	CCNNGG	5 cut(s)	804, 1153, 1791, 2316, 2317
BssMI	GATC	9 cut(s)	810, 905, 1000, 1105, 1141, 1581, 1777, 1798, 2190
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	2 cut(s)	804, 1791
Bst2UI	CCWGG	5 cut(s)	703, 964, 1313, 1866, 2079
Bst4CI	ACNGT	6 cut(s)	242, 955, 1577, 1629, 1724, 1876
BstACI	GRCGYC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstAUI	TGTACA	2 cut(s)	456, 988
BstBAI	YACGTR	1 cut(s)	2166
BstBI	TTCGAA	2 cut(s)	896, 2338
BstC8I	GCNNGC	6 cut(s)	783, 1770, 1816, 1900, 1992, 2286
BstDEI	CTNAG	5 cut(s)	503, 642, 1005, 1168, 1422
BstDSI	CCRYGG	1 cut(s)	1791
BstENI	CCTNNNNNAGG	1 cut(s)	1968
BstF5I	GGATG	6 cut(s)	735, 945, 1045, 1555, 1756, 2140
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	9 cut(s)	813, 908, 1003, 1108, 1144, 1584, 1780, 1801, 2193
BstMAI	GTCTC	4 cut(s)	248, 1171, 1267, 2168
BstMBI	GATC	9 cut(s)	810, 905, 1000, 1105, 1141, 1581, 1777, 1798, 2190
BstMCI	CGRYCG	1 cut(s)	926
BstMWI	GCNNNNNNNGC	7 cut(s)	288, 297, 683, 707, 782, 1085, 2425
BstNI	CCWGG	5 cut(s)	703, 964, 1313, 1866, 2079
BstNSI	RCATGY	3 cut(s)	892, 1088, 1562
BstPAI	GACNNNNGTC	1 cut(s)	1259
BstSCI	CCNGG	7 cut(s)	701, 962, 1311, 1864, 2077, 2316, 2317
BstSFI	CTRYAG	2 cut(s)	168, 2083
BstSLI	GKGCMC	1 cut(s)	917
BstSNI	TACGTA	1 cut(s)	2166
BstV1I	GCAGC	7 cut(s)	312, 664, 1210, 1603, 1949, 2069, 2185
BstV2I	GAAGAC	2 cut(s)	1718, 1725
BstX2I	RGATCY	3 cut(s)	905, 1000, 1105
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstYI	RGATCY	3 cut(s)	905, 1000, 1105
Bsu15I	ATCGAT	1 cut(s)	1584
Bsu36I	CCTNAGG	2 cut(s)	503, 1005
BsuRI	GGCC	6 cut(s)	407, 701, 744, 751, 1818, 2033
BsuTUI	ATCGAT	1 cut(s)	1584
BtgI	CCRYGG	1 cut(s)	1791
BtgZI	GCGATG	1 cut(s)	581
BtrI	CACGTC	1 cut(s)	1415
BtsCI	GGATG	6 cut(s)	735, 945, 1045, 1555, 1756, 2140
BtsI	GCAGTG	4 cut(s)	771, 776, 915, 1521
BtsIMutI	CAGTG	5 cut(s)	771, 776, 915, 1521, 2177
Cac8I	GCNNGC	6 cut(s)	783, 1770, 1816, 1900, 1992, 2286
CciI	TCATGA	1 cut(s)	2230
CfoI	GCGC	1 cut(s)	688
Cfr10I	RCCGGY	1 cut(s)	1554
Cfr13I	GGNCC	2 cut(s)	750, 801
Cfr9I	CCCGGG	1 cut(s)	2317
ClaI	ATCGAT	1 cut(s)	1584
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	6 cut(s)	457, 989, 1978, 2133, 2322, 2383
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviQI	GTAC	6 cut(s)	457, 989, 1978, 2133, 2322, 2383
DdeI	CTNAG	5 cut(s)	503, 642, 1005, 1168, 1422
DpnI	GATC	9 cut(s)	812, 907, 1002, 1107, 1143, 1583, 1779, 1800, 2192
DpnII	GATC	9 cut(s)	810, 905, 1000, 1105, 1141, 1581, 1777, 1798, 2190
DraI	TTTAAA	1 cut(s)	2100
EaeI	YGGCCR	3 cut(s)	699, 1816, 2031
Ecl136II	GAGCTC	3 cut(s)	6, 187, 208
Eco105I	TACGTA	1 cut(s)	2166
Eco130I	CCWWGG	2 cut(s)	804, 1791
Eco24I	GRGCYC	4 cut(s)	8, 189, 210, 2067
Eco31I	GGTCTC	1 cut(s)	248
Eco32I	GATATC	3 cut(s)	1188, 1219, 1689
Eco47I	GGWCC	1 cut(s)	801
Eco53kI	GAGCTC	3 cut(s)	6, 187, 208
Eco81I	CCTNAGG	2 cut(s)	503, 1005
Eco88I	CYCGRG	2 cut(s)	182, 2317
EcoICRI	GAGCTC	3 cut(s)	6, 187, 208
EcoNI	CCTNNNNNAGG	1 cut(s)	1968
EcoO109I	RGGNCCY	1 cut(s)	801
EcoRI	GAATTC	3 cut(s)	967, 1177, 1905
EcoRII	CCWGG	5 cut(s)	701, 962, 1311, 1864, 2077
EcoRV	GATATC	3 cut(s)	1188, 1219, 1689
EcoT14I	CCWWGG	2 cut(s)	804, 1791
EcoT22I	ATGCAT	2 cut(s)	619, 2430
EcoT38I	GRGCYC	4 cut(s)	8, 189, 210, 2067
ErhI	CCWWGG	2 cut(s)	804, 1791
FalI	AAGNNNNNCTT	2 cut(s)	1710, 1742
FaqI	GGGAC	3 cut(s)	353, 662, 2036
FauI	CCCGC	1 cut(s)	1107
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	7 cut(s)	301, 678, 1224, 1617, 1938, 2083, 2199
FokI	GGATG	6 cut(s)	742, 952, 1052, 1562, 1763, 2127
FriOI	GRGCYC	4 cut(s)	8, 189, 210, 2067
Fsp4HI	GCNGC	7 cut(s)	301, 678, 1224, 1617, 1938, 2083, 2199
FspBI	CTAG	3 cut(s)	84, 884, 2393
FspI	TGCGCA	1 cut(s)	687
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	7 cut(s)	301, 678, 1224, 1617, 1938, 2083, 2199
GsuI	CTGGAG	2 cut(s)	2061, 2192
HaeIII	GGCC	6 cut(s)	407, 701, 744, 751, 1818, 2033
HapII	CCGG	4 cut(s)	573, 1555, 2213, 2318
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	688
Hin1I	GRCGYC	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HindIII	AAGCTT	2 cut(s)	1077, 1830
HinfI	GANTC	8 cut(s)	520, 755, 823, 854, 943, 1361, 1429, 2301
HpaII	CCGG	4 cut(s)	573, 1555, 2213, 2318
HphI	GGTGA	5 cut(s)	54, 110, 820, 1387, 2372
Hpy166II	GTNNAC	6 cut(s)	157, 457, 865, 1368, 1519, 2113
Hpy188I	TCNGA	2 cut(s)	815, 1157
Hpy8I	GTNNAC	6 cut(s)	157, 457, 865, 1368, 1519, 2113
Hpy99I	CGWCG	3 cut(s)	332, 338, 353
HpyAV	CCTTC	8 cut(s)	156, 424, 508, 734, 1037, 1741, 1964, 2397
HpyCH4III	ACNGT	6 cut(s)	242, 955, 1577, 1629, 1724, 1876
HpyCH4IV	ACGT	4 cut(s)	351, 1414, 1467, 2165
HpyF10VI	GCNNNNNNNGC	7 cut(s)	288, 297, 683, 707, 782, 1085, 2425
HpyF3I	CTNAG	5 cut(s)	503, 642, 1005, 1168, 1422
HpySE526I	ACGT	4 cut(s)	351, 1414, 1467, 2165
Hsp92I	GRCGYC	1 cut(s)	330
HspAI	GCGC	1 cut(s)	686
KpnI	GGTACC	1 cut(s)	1981
Kzo9I	GATC	9 cut(s)	810, 905, 1000, 1105, 1141, 1581, 1777, 1798, 2190
LmnI	GCTCC	4 cut(s)	213, 1511, 1765, 2254
Lsp1109I	GCAGC	7 cut(s)	312, 664, 1210, 1603, 1949, 2069, 2185
LweI	GCATC	7 cut(s)	604, 720, 1023, 1314, 1326, 1842, 2437
MaeI	CTAG	3 cut(s)	84, 884, 2393
MaeII	ACGT	4 cut(s)	351, 1414, 1467, 2165
MaeIII	GTNAC	8 cut(s)	22, 769, 855, 1063, 1322, 1408, 1561, 2395
MalI	GATC	9 cut(s)	812, 907, 1002, 1107, 1143, 1583, 1779, 1800, 2192
MbiI	CCGCTC	2 cut(s)	878, 1114
MboI	GATC	9 cut(s)	810, 905, 1000, 1105, 1141, 1581, 1777, 1798, 2190
MboII	GAAGA	8 cut(s)	211, 1010, 1042, 1718, 1730, 1793, 2068, 2252
MfeI	CAATTG	1 cut(s)	2258
MflI	RGATCY	3 cut(s)	905, 1000, 1105
MhlI	GDGCHC	6 cut(s)	8, 189, 210, 258, 917, 2067
MlsI	TGGCCA	2 cut(s)	701, 2033
MluNI	TGGCCA	2 cut(s)	701, 2033
MlyI	GAGTC	2 cut(s)	863, 2295
Mox20I	TGGCCA	2 cut(s)	701, 2033
Mph1103I	ATGCAT	2 cut(s)	619, 2430
MroXI	GAANNNNTTC	1 cut(s)	2458
MscI	TGGCCA	2 cut(s)	701, 2033
MseI	TTAA	3 cut(s)	1244, 1319, 2099
MslI	CAYNNNNRTG	7 cut(s)	197, 831, 1089, 1329, 1678, 1785, 1914
Msp20I	TGGCCA	2 cut(s)	701, 2033
MspI	CCGG	4 cut(s)	573, 1555, 2213, 2318
MspR9I	CCNGG	7 cut(s)	703, 964, 1313, 1866, 2079, 2318, 2319
MunI	CAATTG	1 cut(s)	2258
Mva1269I	GAATGC	2 cut(s)	642, 1276
MvaI	CCWGG	5 cut(s)	703, 964, 1313, 1866, 2079
MwoI	GCNNNNNNNGC	7 cut(s)	288, 297, 683, 707, 782, 1085, 2425
NciI	CCSGG	2 cut(s)	2318, 2319
NcoI	CCATGG	1 cut(s)	1791
NdeII	GATC	9 cut(s)	810, 905, 1000, 1105, 1141, 1581, 1777, 1798, 2190
NlaIV	GGNNCC	6 cut(s)	802, 1767, 1789, 1863, 1979, 2435
NmuCI	GTSAC	5 cut(s)	22, 769, 855, 1322, 1561
NsbI	TGCGCA	1 cut(s)	687
NsiI	ATGCAT	2 cut(s)	619, 2430
NspI	RCATGY	3 cut(s)	892, 1088, 1562
NspV	TTCGAA	2 cut(s)	896, 2338
OliI	CACNNNNGTG	2 cut(s)	1329, 1785
PaeR7I	CTCGAG	1 cut(s)	182
PagI	TCATGA	1 cut(s)	2230
PciI	ACATGT	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	1816
PctI	GAATGC	2 cut(s)	642, 1276
PdmI	GAANNNNTTC	1 cut(s)	2458
PfeI	GAWTC	6 cut(s)	520, 755, 823, 943, 1361, 1429
PflFI	GACNNNGTC	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	962
PkrI	GCNGC	7 cut(s)	302, 679, 1225, 1618, 1939, 2084, 2200
PleI	GAGTC	2 cut(s)	862, 2295
PpsI	GAGTC	2 cut(s)	862, 2295
Ppu21I	YACGTR	1 cut(s)	2166
PpuMI	RGGWCCY	1 cut(s)	801
PscI	ACATGT	1 cut(s)	888
PshAI	GACNNNNGTC	1 cut(s)	1259
PsiI	TTATAA	2 cut(s)	725, 839
Psp124BI	GAGCTC	3 cut(s)	8, 189, 210
Psp1406I	AACGTT	1 cut(s)	1467
Psp5II	RGGWCCY	1 cut(s)	801
Psp6I	CCWGG	5 cut(s)	701, 962, 1311, 1864, 2077
PspGI	CCWGG	5 cut(s)	701, 962, 1311, 1864, 2077
PspN4I	GGNNCC	6 cut(s)	802, 1767, 1789, 1863, 1979, 2435
PspPI	GGNCC	2 cut(s)	750, 801
PspPPI	RGGWCCY	1 cut(s)	801
PspXI	VCTCGAGB	1 cut(s)	182
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
PstI	CTGCAG	1 cut(s)	2087
PsuI	RGATCY	3 cut(s)	905, 1000, 1105
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	6 cut(s)	458, 990, 1979, 2134, 2323, 2384
RsaNI	GTAC	6 cut(s)	457, 989, 1978, 2133, 2322, 2383
RseI	CAYNNNNRTG	7 cut(s)	197, 831, 1089, 1329, 1678, 1785, 1914
SacI	GAGCTC	3 cut(s)	8, 189, 210
SaqAI	TTAA	3 cut(s)	1244, 1319, 2099
SatI	GCNGC	7 cut(s)	301, 678, 1224, 1617, 1938, 2083, 2199
Sau3AI	GATC	9 cut(s)	810, 905, 1000, 1105, 1141, 1581, 1777, 1798, 2190
Sau96I	GGNCC	2 cut(s)	750, 801
SchI	GAGTC	2 cut(s)	863, 2295
ScrFI	CCNGG	7 cut(s)	703, 964, 1313, 1866, 2079, 2318, 2319
SduI	GDGCHC	6 cut(s)	8, 189, 210, 258, 917, 2067
SfaNI	GCATC	7 cut(s)	604, 720, 1023, 1314, 1326, 1842, 2437
SfcI	CTRYAG	2 cut(s)	168, 2083
Sfr274I	CTCGAG	1 cut(s)	182
SfuI	TTCGAA	2 cut(s)	896, 2338
SinI	GGWCC	1 cut(s)	801
SlaI	CTCGAG	1 cut(s)	182
SmaI	CCCGGG	1 cut(s)	2319
SmiMI	CAYNNNNRTG	7 cut(s)	197, 831, 1089, 1329, 1678, 1785, 1914
SmlI	CTYRAG	4 cut(s)	182, 476, 1109, 2066
SmoI	CTYRAG	4 cut(s)	182, 476, 1109, 2066
SnaBI	TACGTA	1 cut(s)	2166
SpeI	ACTAGT	1 cut(s)	2392
SsiI	CCGC	3 cut(s)	876, 1114, 1692
SspI	AATATT	1 cut(s)	1950
SspMI	CTAG	3 cut(s)	84, 884, 2393
SstI	GAGCTC	3 cut(s)	8, 189, 210
StyD4I	CCNGG	7 cut(s)	701, 962, 1311, 1864, 2077, 2316, 2317
StyI	CCWWGG	2 cut(s)	804, 1791
TaaI	ACNGT	6 cut(s)	242, 955, 1577, 1629, 1724, 1876
TaiI	ACGT	4 cut(s)	354, 1417, 1470, 2168
TaqII	GACCGA	1 cut(s)	912
TatI	WGTACW	4 cut(s)	456, 988, 2132, 2382
TfiI	GAWTC	6 cut(s)	520, 755, 823, 943, 1361, 1429
Tru1I	TTAA	3 cut(s)	1244, 1319, 2099
Tru9I	TTAA	3 cut(s)	1244, 1319, 2099
TscAI	CASTG	5 cut(s)	778, 783, 922, 1528, 2184
TseFI	GTSAC	5 cut(s)	22, 769, 855, 1322, 1561
TseI	GCWGC	7 cut(s)	300, 677, 1223, 1616, 1937, 2082, 2198
Tsp45I	GTSAC	5 cut(s)	22, 769, 855, 1322, 1561
TspMI	CCCGGG	1 cut(s)	2317
TspRI	CASTG	5 cut(s)	778, 783, 922, 1528, 2184
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	801
XagI	CCTNNNNNAGG	1 cut(s)	1968
XapI	RAATTY	5 cut(s)	583, 967, 1177, 1905, 2221
XceI	RCATGY	3 cut(s)	892, 1088, 1562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XhoI	CTCGAG	1 cut(s)	182
XmaI	CCCGGG	1 cut(s)	2317
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	2458
XspI	CTAG	3 cut(s)	84, 884, 2393
Zsp2I	ATGCAT	2 cut(s)	619, 2430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.