Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015494

Physical Location & Seq

Genomic Coordinates Forward (+)

18825911 .. 18839628

Gene Structure 13718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG100500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAGAGAACTCCACCAAATCTTCCCCCTCATAATCAAGAACGGTCTCTACAACGAGCACTACTTCCAGACCAAGCTCGTCAGCCTCTTCTGCAAATACGGCAGCCCAATAGAAGCCCACCGGGTTTTCGACGCCGTCGGGGACAAACTCGACGTTTTCTACCACACTCTGCTTAAAGGGTATGCCAAGAACTCCTCTTTAGGGGAGGCCATTTCCTTCTTTTGCCGATTGAAGCACGATGGGGTTGCCCCTGTGGTGTATAACTTTACTTACTTGCTTAAGGCGTGTGGCGATAATGCTGACCTGAGGAGGGGGAAGGAGATTCATGGCTCGCTAATTACCAATGGCCTTAGTACTAATCTGTTTGCGATGACCGGAGTTGTGAATTTGTATGCTAAGTGTAGGCAGATTGATGATGCATATAAGATGTTCGATAGAATGCCTGAGAGGGACTTGGTTTCTTGGAACACTATTGTTGCTGCTTATGCGCAAAATGGGTTCGCCAGGAGAGCTTTGGAGTTGGTTATAAGGATGCAGGAGGAAGGCCAGAGGCCCGATTCCATCACATTGGTCACTGCATTGCCTGCTGTTGCAGATTTTGGGTCCTTGGTGATCGGAAAGTCGATTCATGCCTATGTTATAAGAGCCAGTTTTGAGTCACTTGTGAACATTTCTACCGCTCTTCTAGACATGTATTCGAAATGTGGATCTGTGGCCACTGCTCGGTCGATTTTCAACAGGATGAATCACAAGACTGTTGTTTCCTGGAATTCCATGATAGATGGGTATGCACAAAATGAAGATCCTGAGGAAGCAATGGCGATTTTCCAGAAGATGCTCTATGAAGGCTTTGAACCAACCAATGTTACTATTATGGAAGCTTTACATGCTTGTGCTGATTTGGGGGATCTTGAGCGGGGAAAGTTTGTGCATAAATTATTGGATCAACTGAACCTCGGATATGATGTCTCGGTTGTGAATTCTTTGATATCCATGTATTCCAAGTGTAAGAGAGTTGATATTGCTGCAAAATTGTTTAGAGGCTTAAAGGGTCAGAGGAAGAAGAGGGTCGCTAGCTACAAGGTGTACACTATGGAGGAGAAGCTGAATGAGACTCTCAAGAAGAGCTTCAAGTGGCTCAAGGAGACCTGTGGTCTATGGCCGGCACTTCAAGTAGATAAGATGCATGCACGTTACAATTATTTTTTCAAATTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

406

Amino Acids

46.16

Weight (kDa)

9.08

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	151 - 192	2.3e-06	PPR repeat family
PPR	PF01535	153 - 182	7e-06	PPR repeat
PPR_2	PF13041	252 - 291	2.2e-10	PPR repeat family
PPR	PF01535	254 - 284	1.1e-09	PPR repeat
DUF3511	PF12023	352 - 384	5e-15	Domain of unknown function (DUF3511)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11290
fragaria_vesca	FvH4_7g04350
malus_domestica	MD07G1040900.v1.1
prunus_persica	Prupe.2G049000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329341
rosa_laevigata	RLG00000029901
rosa_multiflora	Rmu_co8161036.1_g000001 Rmu_sc0006184.1_g000011 Rmu_sc0039010.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321210
rosa_rugosa	Rorug01G0078700
rosa_samantha	Rh1AG097000 Rh1BG077600 Rh1DG100500
rosa_wichuraiana	Rw1G007520 Rw1G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	527, 641
Acc16I	TGCGCA	1 cut(s)	489
AccBSI	CCGCTC	2 cut(s)	680, 916
AciI	CCGC	2 cut(s)	678, 916
AclWI	GGATC	4 cut(s)	715, 797, 915, 951
AcoI	YGGCCR	2 cut(s)	714, 1160
AcsI	RAATTY	3 cut(s)	385, 769, 979
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	355, 1088
AfiI	CCNNNNNNNGG	3 cut(s)	201, 310, 723
AflII	CTTAAG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	7 cut(s)	232, 736, 854, 1132, 1172, 1210, 1216
AhdI	GACNNNNNGTC	1 cut(s)	1152
AjnI	CCWGG	2 cut(s)	503, 764
AluBI	AGCT	6 cut(s)	76, 512, 881, 1077, 1105, 1128
AluI	AGCT	6 cut(s)	76, 512, 881, 1077, 1105, 1128
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	4 cut(s)	50, 973, 1106, 1139
AlwI	GGATC	4 cut(s)	715, 797, 915, 951
AoxI	GGCC	6 cut(s)	207, 346, 544, 551, 714, 1160
ApeKI	GCWGC	3 cut(s)	102, 479, 1025
ApoI	RAATTY	3 cut(s)	385, 769, 979
Asp700I	GAANNNNTTC	1 cut(s)	1127
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	2 cut(s)	552, 603
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	622
AsuII	TTCGAA	1 cut(s)	698
AsuNHI	GCTAGC	1 cut(s)	1073
AvaII	GGWCC	1 cut(s)	603
AxyI	CCTNAGG	2 cut(s)	305, 807
BalI	TGGCCA	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	114, 466, 1012
BccI	CCATC	3 cut(s)	233, 569, 776
BceAI	ACGGC	2 cut(s)	115, 119
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	2 cut(s)	505, 766
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	4 cut(s)	50, 973, 1106, 1139
BfaI	CTAG	2 cut(s)	686, 1074
BfrI	CTTAAG	1 cut(s)	278
BisI	GCNGC	3 cut(s)	103, 480, 1026
BlsI	GCNGC	3 cut(s)	104, 481, 1027
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	3 cut(s)	122, 505, 766
Bme18I	GGWCC	1 cut(s)	603
BmeRI	GACNNNNNGTC	1 cut(s)	1152
BmgT120I	GGNCC	2 cut(s)	552, 603
BmiI	GGNNCC	1 cut(s)	604
BmrFI	CCNGG	3 cut(s)	122, 505, 766
BmsI	GCATC	4 cut(s)	406, 522, 825, 1173
BmtI	GCTAGC	1 cut(s)	1077
Bpu14I	TTCGAA	1 cut(s)	698
BpuEI	CTTGAG	3 cut(s)	932, 1103, 1124
BpuMI	CCSGG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	2 cut(s)	50, 1139
BsaJI	CCNNGG	2 cut(s)	606, 955
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 310, 723
Bse118I	RCCGGY	1 cut(s)	1162
Bse1I	ACTGG	1 cut(s)	648
Bse21I	CCTNAGG	2 cut(s)	305, 807
Bse3DI	GCAATG	2 cut(s)	578, 822
BseBI	CCWGG	2 cut(s)	505, 766
BseDI	CCNNGG	2 cut(s)	606, 955
BseGI	GGATG	2 cut(s)	537, 747
BseLI	CCNNNNNNNGG	3 cut(s)	201, 310, 723
BseMI	GCAATG	2 cut(s)	578, 822
BseMII	CTCAG	3 cut(s)	296, 435, 798
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	3 cut(s)	184, 322, 1112
BseXI	GCAGC	3 cut(s)	114, 466, 1012
Bsh1285I	CGRYCG	1 cut(s)	728
BshFI	GGCC	6 cut(s)	209, 348, 546, 553, 716, 1162
BsiEI	CGRYCG	1 cut(s)	728
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	3 cut(s)	121, 375, 1163
BslFI	GGGAC	2 cut(s)	155, 464
BslI	CCNNNNNNNGG	3 cut(s)	201, 310, 723
BsmAI	GTCTC	4 cut(s)	50, 973, 1106, 1139
BsmFI	GGGAC	2 cut(s)	155, 464
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	6 cut(s)	209, 348, 546, 553, 716, 1162
Bso31I	GGTCTC	2 cut(s)	50, 1139
Bsp119I	TTCGAA	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	1086
Bsp143I	GATC	5 cut(s)	612, 707, 802, 907, 943
BspACI	CCGC	2 cut(s)	678, 916
BspANI	GGCC	6 cut(s)	209, 348, 546, 553, 716, 1162
BspCNI	CTCAG	3 cut(s)	297, 436, 799
BspLI	GGNNCC	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	1077
BspPI	GGATC	4 cut(s)	715, 797, 915, 951
BspQI	GCTCTTC	2 cut(s)	687, 1118
BspT104I	TTCGAA	1 cut(s)	698
BspTI	CTTAAG	1 cut(s)	278
BspTNI	GGTCTC	2 cut(s)	50, 1139
BsrBI	CCGCTC	2 cut(s)	680, 916
BsrDI	GCAATG	2 cut(s)	578, 822
BsrFI	RCCGGY	1 cut(s)	1162
BsrGI	TGTACA	1 cut(s)	1086
BsrI	ACTGG	1 cut(s)	648
BssAI	RCCGGY	1 cut(s)	1162
BssECI	CCNNGG	2 cut(s)	606, 955
BssMI	GATC	5 cut(s)	612, 707, 802, 907, 943
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	505, 766
Bst4CI	ACNGT	2 cut(s)	44, 757
Bst6I	CTCTTC	4 cut(s)	92, 687, 1058, 1118
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	1086
BstBI	TTCGAA	1 cut(s)	698
BstC8I	GCNNGC	5 cut(s)	332, 585, 1075, 1164, 1188
BstDEI	CTNAG	5 cut(s)	305, 350, 396, 444, 807
BstF5I	GGATG	2 cut(s)	537, 747
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	5 cut(s)	615, 710, 805, 910, 946
BstMAI	GTCTC	4 cut(s)	50, 973, 1106, 1139
BstMBI	GATC	5 cut(s)	612, 707, 802, 907, 943
BstMCI	CGRYCG	1 cut(s)	728
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 99, 485, 509, 584, 887
BstNI	CCWGG	2 cut(s)	505, 766
BstNSI	RCATGY	3 cut(s)	694, 890, 1190
BstSCI	CCNGG	3 cut(s)	120, 503, 764
BstV1I	GCAGC	3 cut(s)	114, 466, 1012
BstX2I	RGATCY	3 cut(s)	707, 802, 907
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	3 cut(s)	707, 802, 907
Bsu36I	CCTNAGG	2 cut(s)	305, 807
BsuRI	GGCC	6 cut(s)	209, 348, 546, 553, 716, 1162
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	537, 747
BtsI	GCAGTG	2 cut(s)	573, 717
BtsIMutI	CAGTG	2 cut(s)	573, 717
Cac8I	GCNNGC	5 cut(s)	332, 585, 1075, 1164, 1188
CfoI	GCGC	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	1162
Cfr13I	GGNCC	2 cut(s)	552, 603
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	354, 1087
CviAII	CATG	7 cut(s)	326, 629, 691, 775, 887, 994, 1187
CviQI	GTAC	2 cut(s)	354, 1087
DdeI	CTNAG	5 cut(s)	305, 350, 396, 444, 807
DpnI	GATC	5 cut(s)	614, 709, 804, 909, 945
DpnII	GATC	5 cut(s)	612, 707, 802, 907, 943
DriI	GACNNNNNGTC	1 cut(s)	1152
EaeI	YGGCCR	2 cut(s)	714, 1160
Eam1104I	CTCTTC	4 cut(s)	92, 687, 1058, 1118
Eam1105I	GACNNNNNGTC	1 cut(s)	1152
EarI	CTCTTC	4 cut(s)	92, 687, 1058, 1118
Eco130I	CCWWGG	1 cut(s)	606
Eco31I	GGTCTC	2 cut(s)	50, 1139
Eco32I	GATATC	1 cut(s)	990
Eco47I	GGWCC	1 cut(s)	603
Eco81I	CCTNAGG	2 cut(s)	305, 807
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRI	GAATTC	2 cut(s)	769, 979
EcoRII	CCWGG	2 cut(s)	503, 764
EcoRV	GATATC	1 cut(s)	990
EcoT14I	CCWWGG	1 cut(s)	606
EcoT22I	ATGCAT	2 cut(s)	421, 1188
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	7 cut(s)	329, 632, 694, 778, 890, 997, 1190
FalI	AAGNNNNNCTT	2 cut(s)	1112, 1144
FaqI	GGGAC	2 cut(s)	155, 464
FatI	CATG	7 cut(s)	325, 628, 690, 774, 886, 993, 1186
FauI	CCCGC	1 cut(s)	909
Fnu4HI	GCNGC	3 cut(s)	103, 480, 1026
FokI	GGATG	2 cut(s)	544, 754
Fsp4HI	GCNGC	3 cut(s)	103, 480, 1026
FspBI	CTAG	2 cut(s)	686, 1074
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	103, 480, 1026
HaeIII	GGCC	6 cut(s)	209, 348, 546, 553, 716, 1162
HapII	CCGG	3 cut(s)	121, 375, 1163
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	329, 632, 694, 778, 890, 997, 1190
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HindIII	AAGCTT	1 cut(s)	879
HinfI	GANTC	6 cut(s)	322, 557, 625, 656, 745, 1114
HpaII	CCGG	3 cut(s)	121, 375, 1163
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	3 cut(s)	667, 1087, 1089
Hpy188I	TCNGA	3 cut(s)	617, 959, 1056
Hpy188III	TCNNGA	7 cut(s)	37, 67, 686, 806, 829, 911, 1120
Hpy8I	GTNNAC	3 cut(s)	667, 1087, 1089
Hpy99I	CGWCG	3 cut(s)	134, 140, 155
HpyAV	CCTTC	4 cut(s)	226, 310, 536, 839
HpyCH4III	ACNGT	2 cut(s)	44, 757
HpyCH4IV	ACGT	2 cut(s)	153, 1192
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 99, 485, 509, 584, 887
HpyF3I	CTNAG	5 cut(s)	305, 350, 396, 444, 807
HpySE526I	ACGT	2 cut(s)	153, 1192
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	329, 632, 694, 778, 890, 997, 1190
HspAI	GCGC	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	1162
KroNI	GCCGGC	1 cut(s)	1164
Kzo9I	GATC	5 cut(s)	612, 707, 802, 907, 943
LguI	GCTCTTC	2 cut(s)	687, 1118
Lsp1109I	GCAGC	3 cut(s)	114, 466, 1012
LweI	GCATC	4 cut(s)	406, 522, 825, 1173
MaeI	CTAG	2 cut(s)	686, 1074
MaeII	ACGT	2 cut(s)	153, 1192
MaeIII	GTNAC	4 cut(s)	571, 657, 865, 1193
MalI	GATC	5 cut(s)	614, 709, 804, 909, 945
MbiI	CCGCTC	2 cut(s)	680, 916
MboI	GATC	5 cut(s)	612, 707, 802, 907, 943
MboII	GAAGA	8 cut(s)	13, 79, 674, 812, 844, 1072, 1075, 1135
MflI	RGATCY	3 cut(s)	707, 802, 907
MhlI	GDGCHC	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	716
MluCI	AATT	8 cut(s)	336, 385, 769, 935, 979, 1031, 1198, 1211
MluNI	TGGCCA	1 cut(s)	716
MlyI	GAGTC	2 cut(s)	665, 1108
Mox20I	TGGCCA	1 cut(s)	716
Mph1103I	ATGCAT	2 cut(s)	421, 1188
MroNI	GCCGGC	1 cut(s)	1162
MroXI	GAANNNNTTC	1 cut(s)	1127
MscI	TGGCCA	1 cut(s)	716
MseI	TTAA	3 cut(s)	174, 279, 1046
MslI	CAYNNNNRTG	2 cut(s)	633, 891
Msp20I	TGGCCA	1 cut(s)	716
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	3 cut(s)	121, 375, 1163
MspR9I	CCNGG	3 cut(s)	122, 505, 766
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	2 cut(s)	505, 766
MwoI	GCNNNNNNNGC	6 cut(s)	90, 99, 485, 509, 584, 887
NaeI	GCCGGC	1 cut(s)	1164
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	5 cut(s)	612, 707, 802, 907, 943
NgoMIV	GCCGGC	1 cut(s)	1162
NheI	GCTAGC	1 cut(s)	1073
NlaIII	CATG	7 cut(s)	329, 632, 694, 778, 890, 997, 1190
NlaIV	GGNNCC	1 cut(s)	604
NmuCI	GTSAC	2 cut(s)	571, 657
NsbI	TGCGCA	1 cut(s)	489
NsiI	ATGCAT	2 cut(s)	421, 1188
NspI	RCATGY	3 cut(s)	694, 890, 1190
NspV	TTCGAA	1 cut(s)	698
PaeI	GCATGC	1 cut(s)	1190
PciI	ACATGT	1 cut(s)	690
PciSI	GCTCTTC	2 cut(s)	687, 1118
PctI	GAATGC	1 cut(s)	444
PdiI	GCCGGC	1 cut(s)	1164
PdmI	GAANNNNTTC	1 cut(s)	1127
PfeI	GAWTC	4 cut(s)	322, 557, 625, 745
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	764
PkrI	GCNGC	3 cut(s)	104, 481, 1027
PleI	GAGTC	2 cut(s)	664, 1108
PpsI	GAGTC	2 cut(s)	664, 1108
PpuMI	RGGWCCY	1 cut(s)	603
PscI	ACATGT	1 cut(s)	690
PsiI	TTATAA	2 cut(s)	527, 641
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	503, 764
PspGI	CCWGG	2 cut(s)	503, 764
PspN4I	GGNNCC	1 cut(s)	604
PspPI	GGNCC	2 cut(s)	552, 603
PspPPI	RGGWCCY	1 cut(s)	603
PsrI	GAACNNNNNNTAC	2 cut(s)	32, 64
PsuI	RGATCY	3 cut(s)	707, 802, 907
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	2 cut(s)	355, 1088
RsaNI	GTAC	2 cut(s)	354, 1087
RseI	CAYNNNNRTG	2 cut(s)	633, 891
SapI	GCTCTTC	2 cut(s)	687, 1118
SaqAI	TTAA	3 cut(s)	174, 279, 1046
SatI	GCNGC	3 cut(s)	103, 480, 1026
Sau3AI	GATC	5 cut(s)	612, 707, 802, 907, 943
Sau96I	GGNCC	2 cut(s)	552, 603
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	2 cut(s)	665, 1108
ScrFI	CCNGG	3 cut(s)	122, 505, 766
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	4 cut(s)	406, 522, 825, 1173
SfuI	TTCGAA	1 cut(s)	698
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	2 cut(s)	633, 891
SmlI	CTYRAG	4 cut(s)	278, 911, 1118, 1139
SmoI	CTYRAG	4 cut(s)	278, 911, 1118, 1139
SphI	GCATGC	1 cut(s)	1190
Sse9I	AATT	8 cut(s)	336, 385, 769, 935, 979, 1031, 1198, 1211
SsiI	CCGC	2 cut(s)	678, 916
SspMI	CTAG	2 cut(s)	686, 1074
StyD4I	CCNGG	3 cut(s)	120, 503, 764
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	44, 757
TaiI	ACGT	2 cut(s)	156, 1195
TaqI	TCGA	6 cut(s)	129, 150, 432, 623, 698, 728
TaqII	GACCGA	1 cut(s)	714
TasI	AATT	8 cut(s)	336, 385, 769, 935, 979, 1031, 1198, 1211
TatI	WGTACW	2 cut(s)	353, 1086
TfiI	GAWTC	4 cut(s)	322, 557, 625, 745
Tru1I	TTAA	3 cut(s)	174, 279, 1046
Tru9I	TTAA	3 cut(s)	174, 279, 1046
TscAI	CASTG	2 cut(s)	580, 724
TseFI	GTSAC	2 cut(s)	571, 657
TseI	GCWGC	3 cut(s)	102, 479, 1025
Tsp45I	GTSAC	2 cut(s)	571, 657
TspDTI	ATGAA	5 cut(s)	314, 617, 758, 813, 858
TspRI	CASTG	2 cut(s)	580, 724
Tth111I	GACNNNGTC	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	603
XapI	RAATTY	3 cut(s)	385, 769, 979
XbaI	TCTAGA	1 cut(s)	685
XceI	RCATGY	3 cut(s)	694, 890, 1190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	1127
XspI	CTAG	2 cut(s)	686, 1074
ZrmI	AGTACT	1 cut(s)	355
Zsp2I	ATGCAT	2 cut(s)	421, 1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.