Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8161036.1

Orthogroup ID

OG0015494

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 617

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8161036.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 616 bp

atgatattaggttttgcacagaatggtcgcgtcagcgaggctttaagtcacttctgtgagatgcaatctcaaaatataaagccagattcgtttacaatggtgagtgtaattccagctcttgcagagttatcagttacacgtcaggctaagtggatccatggacttgttgtaagaaaatgttttgacaaaaacgtttttgtgatgactgctcttgttgatatgtacgcgaaatgtggagctgtccacactgcaagaaaactttttgacctgatggatgaccggcatgtgacaacatggaacagtatgatcgacggatatggaacaaatgggcttggaaaggctgctgtggaactgttcaatgaaatgaaaaagggcataataaagccaaatgatataacatttctatgtgtgatatccgcttgttctcattcaggattggtggaagacggtcttcaatactttgaaagcatgaaggatgactatggcttggagcctgcaatggatcactatggtgcgatggttgatcttcttggtcgagctggccgactaaatgaggcttgggattttattcaaaagatgcctatggaacctggcattacagtctttggtgcaatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

205

Amino Acids

22.79

Weight (kDa)

5.65

Isoelectric Point (pI)

23.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11290
fragaria_vesca	FvH4_7g04350
malus_domestica	MD07G1040900.v1.1
prunus_persica	Prupe.2G049000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329341
rosa_laevigata	RLG00000029901
rosa_multiflora	Rmu_co8161036.1_g000001 Rmu_sc0006184.1_g000011 Rmu_sc0039010.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321210
rosa_rugosa	Rorug01G0078700
rosa_samantha	Rh1AG097000 Rh1BG077600 Rh1DG100500
rosa_wichuraiana	Rw1G007520 Rw1G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	30, 227
AciI	CCGC	1 cut(s)	417
AclI	AACGTT	1 cut(s)	192
AclWI	GGATC	3 cut(s)	148, 161, 510
AcoI	YGGCCR	1 cut(s)	541
AfaI	GTAC	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	358, 455, 464, 572
AjiI	CACGTC	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	589
AleI	CACNNNNGTG	2 cut(s)	54, 510
AluBI	AGCT	3 cut(s)	116, 239, 539
AluI	AGCT	3 cut(s)	116, 239, 539
AlwI	GGATC	3 cut(s)	148, 161, 510
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	443, 450
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	265, 511
BciT130I	CCWGG	1 cut(s)	591
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	591
BmgBI	CACGTC	1 cut(s)	140
BmiI	GGNNCC	3 cut(s)	155, 492, 588
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	2 cut(s)	51, 567
BpiI	GAAGAC	2 cut(s)	443, 450
BsaJI	CCNNGG	1 cut(s)	157
Bse118I	RCCGGY	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	2 cut(s)	280, 481
BseMI	GCAATG	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	328
Bsh1236I	CGCG	2 cut(s)	30, 227
BshFI	GGCC	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	280
BsnI	GGCC	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	153, 306, 502, 523
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	1 cut(s)	543
BspFNI	CGCG	2 cut(s)	30, 227
BspLI	GGNNCC	3 cut(s)	155, 492, 588
BspPI	GGATC	3 cut(s)	148, 161, 510
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	4 cut(s)	153, 306, 502, 523
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	4 cut(s)	302, 354, 449, 601
BstC8I	GCNNGC	2 cut(s)	495, 541
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	280, 481
BstFNI	CGCG	2 cut(s)	30, 227
BstKTI	GATC	4 cut(s)	156, 309, 505, 526
BstMBI	GATC	4 cut(s)	153, 306, 502, 523
BstNI	CCWGG	1 cut(s)	591
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	589
BstUI	CGCG	2 cut(s)	30, 227
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	2 cut(s)	443, 450
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	530
BtrI	CACGTC	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	280, 481
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	495, 541
Cfr10I	RCCGGY	1 cut(s)	279
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	4 cut(s)	158, 284, 294, 469
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	4 cut(s)	155, 308, 504, 525
DpnII	GATC	4 cut(s)	153, 306, 502, 523
EaeI	YGGCCR	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	589
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	4 cut(s)	161, 287, 297, 472
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	4 cut(s)	157, 283, 293, 468
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	2 cut(s)	287, 488
Fsp4HI	GCNGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	4 cut(s)	161, 287, 297, 472
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	93, 244
Hpy188III	TCNNGA	1 cut(s)	432
Hpy8I	GTNNAC	2 cut(s)	93, 244
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	4 cut(s)	302, 354, 449, 601
HpyCH4IV	ACGT	2 cut(s)	139, 192
HpyCH4V	TGCA	6 cut(s)	17, 64, 122, 251, 497, 611
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	2 cut(s)	139, 192
Hsp92II	CATG	4 cut(s)	161, 287, 297, 472
Kzo9I	GATC	4 cut(s)	153, 306, 502, 523
LmnI	GCTCC	2 cut(s)	236, 490
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	2 cut(s)	51, 567
MaeII	ACGT	2 cut(s)	139, 192
MaeIII	GTNAC	3 cut(s)	47, 133, 286
MalI	GATC	4 cut(s)	155, 308, 504, 525
MboI	GATC	4 cut(s)	153, 306, 502, 523
MboII	GAAGA	3 cut(s)	443, 455, 518
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	1 cut(s)	108
MnlI	CCTC	2 cut(s)	31, 547
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	3 cut(s)	54, 403, 510
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	591
MvnI	CGCG	2 cut(s)	30, 227
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	4 cut(s)	153, 306, 502, 523
NlaIII	CATG	4 cut(s)	161, 287, 297, 472
NlaIV	GGNNCC	3 cut(s)	155, 492, 588
NmuCI	GTSAC	2 cut(s)	47, 286
NspI	RCATGY	1 cut(s)	287
OliI	CACNNNNGTG	2 cut(s)	54, 510
PcsI	WCGNNNNNNNCGW	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	343
Psp1406I	AACGTT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	3 cut(s)	155, 492, 588
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	3 cut(s)	54, 403, 510
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	4 cut(s)	153, 306, 502, 523
ScrFI	CCNGG	1 cut(s)	591
SetI	ASST	8 cut(s)	13, 118, 142, 195, 241, 270, 541, 592
SfaNI	GCATC	2 cut(s)	51, 567
SmiMI	CAYNNNNRTG	3 cut(s)	54, 403, 510
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	589
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	4 cut(s)	302, 354, 449, 601
TaiI	ACGT	2 cut(s)	142, 195
TaqI	TCGA	2 cut(s)	309, 535
TasI	AATT	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	2 cut(s)	47, 286
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	2 cut(s)	47, 286
TspDTI	ATGAA	3 cut(s)	375, 380, 485
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	253
XceI	RCATGY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.