Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0015494

Physical Location & Seq

Genomic Coordinates Forward (+)

15959791 .. 15962259

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2469 bp

ATGAGCTCACAGCTCTTGCCAGTCACACCTCTGCTCTCCATAAACAACACCAAAACACCACCACCACCACCACCACCAATATCAACATCAACATTTCACCAGCTTTCCCAAAGAAGTGAAAGAACCCACATTCCTTCTCATGTCTACAAGCACCCTACAGCCATACTCCTCGAGCTCTGCACTTCCATGAGAGAACTCCACCAAATCTTCCCCCTCATAATCAAGAACGGTCTCTACAACGAGCACTACTTCCAGACCAAGCTCGTCAGCCTCTTCTGCAAATACGGCAGCCCAATTGAAGCCCACCGGGTTTTCGACGCCGTCGGGGACAAACTCGACGTTTTCTACCACACTCTGCTTAAAGGGTATGCCAAGAACTCCTCTTTAGGGGAGGCCATTTCCTTCTTTTGCCGATTGAAGCATGATGGGGTTGCCCCTGTTGTGTATAACTTTACTTACTTGCTTAAGGCGTGTGGCGATAATGCTGACCTGAGGAGGGGGAAGGAGATTCATGGCTCTCTAATTACCAATGGCTTTAGTACTAATCTGTTTGCGATGACCGGAGTTGTGAATTTGTATGCTAAGTGTAGGCAGATTGATGATGCATATAAGATGTTCGATAGAATGCCTGAGAGGGACTTGGTTTCTTGGAACACTATCGTTGCTGCTTATGCGCAAAATGGGTTCGCCAGGAGAGCTTTGGAGTTGGTTATAAGGATGCAGGAGGAAGGCCAGAGGCCGGATTCCATCACATTGGTCACTGCACTGCCTGCTGTTGCAGATTTTGGGTCCTTGGTGATCGGAAAGTCGATTCATGCCTATGTTATAAGAGCTAGTTTTGAGTCACTTGTGAACATTTCTACCGCTCTTCTAGACATGTATTCGAAATGTGGATCTGTGGCCACTGCTCGGTCGATTTTCAACAGGATGAATCACAAGACTGTTGTTTCCTGGAATTCTATGATAGATGGGTATGTACAAAATGAAGATCCTGAGGAAGCAATGGCGATTTTCCAGAAGATGCTGGATGAAGGCTTTGAACCAACCAATGTTACTATTATGGAAGCTTTACATGCTTGTGCTGATTTGGGAGATCTTGAGCGGGGAAAGTTTGTGCATAAATTATTGGATCAACTGAACCTCGGATATGATGTCTCAGTTGTGAATTCTTTGATATCCATGTATTCCAAGTGTAAGAGAGTTGATATTGCTGCAAAATTGTTTAGAGGCTTAAAGGGTAAGACCATCGTCTCATGGAATGCCATGATATTAGGTTTTGCACAGAATGGTCGCGTCAGCGAGGCTTTAAGTCACTTCTGTGAGATGCAATCTCAAAATATAAAGCCAGATTCGTTTACAATGGTGAGTGTAATTCCAGCTCTTGCAGAGTTATCAGTTACACGTCAGGCTAAGTGGATCCATGGACTTGTTGTAAGAAAATGTTTTGACAAAAACGTTTTTGTGATGACTGCTCTTGTTGATATGTACGCGAAATGTGGAGCTGTCCACACTGCAAGAAAACTTTTTGACCTGATGGATGACCGGCATGTGACAACATGGAACAGTATGATCGACGGATATGGAACAAATGGGCTTGGAAAGGCTGCTGTGGAACTGTTCAATGAAATGAAAAAGGGCATAATAAAGCCAAATGATATAACATTTCTATGTGTGATATCCGCTTGTTCTCATTCAGGATTGGTGGAAGACGGTCTTCAATACTTTGAAAGCATGAAGGATGACTATGGCTTGGAGCCTGCAATGGATCACTACGGTGCGATGGTTGATCTTCTTGGTCGAGCTGGCCGACTAAATGAGGCTTGGGATTTTATTCAAAAGATGCCTATGGAACCTGGCATTACAGTGTTTGGTGCAATGTTAGGGGCTTGCAGAATTCATAAAAATGTTGAATTGGGGGAAAAGGCAGCAGATAAAATATTCGAGTTGAACCCTGTTGAAGGTGGGTACCATGTTTTGCTTGCTAACATATATTCCACAGCTTCAATGTGGGACAAAGTGGCCAAAGTGCGAACAACAATGGAGAAGAAAGGGCTCAAGAAAACTCCAGGCTGCAGTTTGGTGGATTTAAAGAATCAAGTTCACACTTTCTATTCTGGAAGTACAAGCCATCCCCAATCCAAGAGAATATATACGTATCTGGAGACACTGGGAGATAAGATCAAGGCTGCTGGTTATGTGCCGGACACAAATTCAATTCATGATGTGGAAGATGATGTCAAGGAGCAATTGCTAAATAGCCATAGTGAGAAGCTGGCTATTGCATTTGGACTCTTGAATACTACCCCGGGTACAACAATACACATTCGAAAGAACCTACGAGTTTGTGGTGATTGCCACAACGCAACCAAGTACATTTCACTAGTAACTGGAAGGGAAATCATAGTGCGTGATATGCATCGGTTCCATCATTTCAGGAATGGAACTTGTTCTTGCGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

822

Amino Acids

91.84

Weight (kDa)

8.12

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	213 - 254	5.7e-06	PPR repeat family
PPR_2	PF13041	314 - 353	8.9e-11	PPR repeat family
PPR	PF01535	316 - 346	1.1e-09	PPR repeat
PPR_2	PF13041	415 - 462	1.1e-11	PPR repeat family
PPR	PF01535	417 - 447	2.2e-07	PPR repeat
PPR_2	PF13041	517 - 563	2.7e-13	PPR repeat family
PPR	PF01535	519 - 545	5.3e-08	PPR repeat
E_motif	PF20431	633 - 694	8.4e-20	E motif
DYW_deaminase	PF14432	731 - 822	1.9e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0015494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11290
fragaria_vesca	FvH4_7g04350
malus_domestica	MD07G1040900.v1.1
prunus_persica	Prupe.2G049000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329341
rosa_laevigata	RLG00000029901
rosa_multiflora	Rmu_co8161036.1_g000001 Rmu_sc0006184.1_g000011 Rmu_sc0039010.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321210
rosa_rugosa	Rorug01G0078700
rosa_samantha	Rh1AG097000 Rh1BG077600 Rh1DG100500
rosa_wichuraiana	Rw1G007520 Rw1G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	713, 827
Acc16I	TGCGCA	1 cut(s)	675
Acc65I	GGTACC	1 cut(s)	1965
AccB1I	GGYRCC	1 cut(s)	1965
AccBSI	CCGCTC	2 cut(s)	866, 1102
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	2 cut(s)	1293, 1490
AciI	CCGC	4 cut(s)	864, 1102, 1680, 2454
AclI	AACGTT	1 cut(s)	1455
AclWI	GGATC	6 cut(s)	901, 983, 1137, 1411, 1424, 1773
AcoI	YGGCCR	3 cut(s)	900, 1804, 2019
AcsI	RAATTY	5 cut(s)	571, 955, 1165, 1893, 2209
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	7 cut(s)	541, 978, 1487, 1967, 2122, 2311, 2372
AfiI	CCNNNNNNNGG	5 cut(s)	387, 496, 739, 909, 1958
AflII	CTTAAG	1 cut(s)	464
AflIII	ACRYGT	2 cut(s)	876, 1400
AhlI	ACTAGT	1 cut(s)	2380
AjiI	CACGTC	1 cut(s)	1403
AjnI	CCWGG	4 cut(s)	689, 950, 1852, 2065
AleI	CACNNNNGTG	2 cut(s)	1317, 1773
AloI	GAACNNNNNNTCC	2 cut(s)	115, 147
Alw21I	GWGCWC	3 cut(s)	8, 177, 246
Alw26I	GTCTC	4 cut(s)	236, 1159, 1255, 2156
AlwI	GGATC	6 cut(s)	901, 983, 1137, 1411, 1424, 1773
Ama87I	CYCGRG	2 cut(s)	170, 2305
AoxI	GGCC	6 cut(s)	393, 730, 737, 900, 1804, 2019
ApeKI	GCWGC	7 cut(s)	288, 665, 1211, 1604, 1925, 2070, 2186
ApoI	RAATTY	5 cut(s)	571, 955, 1165, 1893, 2209
Asp700I	GAANNNNTTC	1 cut(s)	2446
Asp718I	GGTACC	1 cut(s)	1965
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	1 cut(s)	789
AsuC2I	CCSGG	3 cut(s)	308, 2306, 2307
AsuHPI	GGTGA	4 cut(s)	89, 808, 1375, 2360
AsuII	TTCGAA	2 cut(s)	884, 2326
AvaI	CYCGRG	2 cut(s)	170, 2305
AvaII	GGWCC	1 cut(s)	789
AxyI	CCTNAGG	2 cut(s)	491, 993
BalI	TGGCCA	2 cut(s)	902, 2021
BamHI	GGATCC	1 cut(s)	1416
BanI	GGYRCC	1 cut(s)	1965
BanII	GRGCYC	3 cut(s)	8, 177, 2055
BbsI	GAAGAC	2 cut(s)	1706, 1713
Bbv12I	GWGCWC	3 cut(s)	8, 177, 246
BbvI	GCAGC	7 cut(s)	300, 652, 1198, 1591, 1937, 2057, 2173
BccI	CCATC	8 cut(s)	419, 755, 962, 1253, 1528, 1774, 2136, 2433
BceAI	ACGGC	2 cut(s)	301, 305
BciT130I	CCWGG	4 cut(s)	691, 952, 1854, 2067
BcnI	CCSGG	3 cut(s)	308, 2306, 2307
BcoDI	GTCTC	4 cut(s)	236, 1159, 1255, 2156
BcuI	ACTAGT	1 cut(s)	2380
BfaI	CTAG	3 cut(s)	834, 872, 2381
BfmI	CTRYAG	2 cut(s)	156, 2071
BfrI	CTTAAG	1 cut(s)	464
BglII	AGATCT	1 cut(s)	1093
BisI	GCNGC	7 cut(s)	289, 666, 1212, 1605, 1926, 2071, 2187
BlsI	GCNGC	7 cut(s)	290, 667, 1213, 1606, 1927, 2072, 2188
BmcAI	AGTACT	1 cut(s)	541
Bme1390I	CCNGG	7 cut(s)	308, 691, 952, 1854, 2067, 2306, 2307
Bme18I	GGWCC	1 cut(s)	789
BmeT110I	CYCGRG	2 cut(s)	170, 2305
BmgBI	CACGTC	1 cut(s)	1403
BmgT120I	GGNCC	1 cut(s)	789
BmiI	GGNNCC	6 cut(s)	790, 1418, 1755, 1851, 1967, 2423
BmrFI	CCNGG	7 cut(s)	308, 691, 952, 1854, 2067, 2306, 2307
BmrI	ACTGGG	1 cut(s)	2177
BmsI	GCATC	6 cut(s)	592, 708, 1011, 1314, 1830, 2425
BmuI	ACTGGG	1 cut(s)	2177
BoxI	GACNNNNGTC	1 cut(s)	1247
BpiI	GAAGAC	2 cut(s)	1706, 1713
BpmI	CTGGAG	2 cut(s)	2049, 2180
Bpu14I	TTCGAA	2 cut(s)	884, 2326
BpuEI	CTTGAG	2 cut(s)	1118, 2039
BpuMI	CCSGG	3 cut(s)	308, 2306, 2307
BsaAI	YACGTR	1 cut(s)	2154
BsaBI	GATNNNNATC	1 cut(s)	2415
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	5 cut(s)	792, 1141, 1420, 2304, 2305
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	5 cut(s)	387, 496, 739, 909, 1958
Bse118I	RCCGGY	1 cut(s)	1542
Bse1I	ACTGG	3 cut(s)	20, 2172, 2392
Bse21I	CCTNAGG	2 cut(s)	491, 993
Bse3DI	GCAATG	3 cut(s)	1008, 1767, 1881
Bse8I	GATNNNNATC	1 cut(s)	2415
BseBI	CCWGG	4 cut(s)	691, 952, 1854, 2067
BseDI	CCNNGG	5 cut(s)	792, 1141, 1420, 2304, 2305
BseGI	GGATG	6 cut(s)	723, 933, 1033, 1543, 1744, 2128
BseJI	GATNNNNATC	1 cut(s)	2415
BseLI	CCNNNNNNNGG	5 cut(s)	387, 496, 739, 909, 1958
BseMI	GCAATG	3 cut(s)	1008, 1767, 1881
BseMII	CTCAG	4 cut(s)	482, 621, 984, 1170
BseNI	ACTGG	3 cut(s)	20, 2172, 2392
BseRI	GAGGAG	3 cut(s)	158, 370, 508
BseXI	GCAGC	7 cut(s)	300, 652, 1198, 1591, 1937, 2057, 2173
BsgI	GTGCAG	2 cut(s)	163, 747
Bsh1236I	CGCG	2 cut(s)	1293, 1490
Bsh1285I	CGRYCG	1 cut(s)	914
BshFI	GGCC	6 cut(s)	395, 732, 739, 902, 1806, 2021
BshNI	GGYRCC	1 cut(s)	1965
BsiEI	CGRYCG	1 cut(s)	914
BsiHKAI	GWGCWC	3 cut(s)	8, 177, 246
BsiHKCI	CYCGRG	2 cut(s)	170, 2305
BsiSI	CCGG	6 cut(s)	307, 561, 740, 1543, 2201, 2306
BslFI	GGGAC	3 cut(s)	341, 650, 2024
BslI	CCNNNNNNNGG	5 cut(s)	387, 496, 739, 909, 1958
BsmAI	GTCTC	4 cut(s)	236, 1159, 1255, 2156
BsmBI	CGTCTC	1 cut(s)	1255
BsmFI	GGGAC	3 cut(s)	341, 650, 2024
BsmI	GAATGC	2 cut(s)	630, 1264
BsnI	GGCC	6 cut(s)	395, 732, 739, 902, 1806, 2021
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	2 cut(s)	170, 2305
Bsp119I	TTCGAA	2 cut(s)	884, 2326
Bsp1286I	GDGCHC	4 cut(s)	8, 177, 246, 2055
Bsp1407I	TGTACA	1 cut(s)	976
Bsp19I	CCATGG	1 cut(s)	1420
BspACI	CCGC	4 cut(s)	864, 1102, 1680, 2454
BspANI	GGCC	6 cut(s)	395, 732, 739, 902, 1806, 2021
BspCNI	CTCAG	4 cut(s)	483, 622, 985, 1169
BspFNI	CGCG	2 cut(s)	1293, 1490
BspHI	TCATGA	1 cut(s)	2218
BspLI	GGNNCC	6 cut(s)	790, 1418, 1755, 1851, 1967, 2423
BspMAI	CTGCAG	1 cut(s)	2075
BspPI	GGATC	6 cut(s)	901, 983, 1137, 1411, 1424, 1773
BspQI	GCTCTTC	1 cut(s)	873
BspT104I	TTCGAA	2 cut(s)	884, 2326
BspT107I	GGYRCC	1 cut(s)	1965
BspTI	CTTAAG	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	236
BsrBI	CCGCTC	2 cut(s)	866, 1102
BsrDI	GCAATG	3 cut(s)	1008, 1767, 1881
BsrFI	RCCGGY	1 cut(s)	1542
BsrGI	TGTACA	1 cut(s)	976
BsrI	ACTGG	3 cut(s)	20, 2172, 2392
BssAI	RCCGGY	1 cut(s)	1542
BssECI	CCNNGG	5 cut(s)	792, 1141, 1420, 2304, 2305
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	2 cut(s)	792, 1420
Bst2UI	CCWGG	4 cut(s)	691, 952, 1854, 2067
Bst4CI	ACNGT	7 cut(s)	230, 943, 1565, 1617, 1712, 1775, 1864
Bst6I	CTCTTC	2 cut(s)	278, 873
BstACI	GRCGYC	1 cut(s)	318
BstAFI	CTTAAG	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstAUI	TGTACA	1 cut(s)	976
BstBAI	YACGTR	1 cut(s)	2154
BstBI	TTCGAA	2 cut(s)	884, 2326
BstC8I	GCNNGC	6 cut(s)	771, 1758, 1804, 1888, 1980, 2274
BstDEI	CTNAG	6 cut(s)	491, 582, 630, 993, 1156, 1410
BstDSI	CCRYGG	1 cut(s)	1420
BstENI	CCTNNNNNAGG	1 cut(s)	1956
BstF5I	GGATG	6 cut(s)	723, 933, 1033, 1543, 1744, 2128
BstFNI	CGCG	2 cut(s)	1293, 1490
BstHHI	GCGC	1 cut(s)	676
BstMAI	GTCTC	4 cut(s)	236, 1159, 1255, 2156
BstMCI	CGRYCG	1 cut(s)	914
BstMWI	GCNNNNNNNGC	7 cut(s)	276, 285, 671, 695, 770, 1073, 2413
BstNI	CCWGG	4 cut(s)	691, 952, 1854, 2067
BstNSI	RCATGY	3 cut(s)	880, 1076, 1550
BstPAI	GACNNNNGTC	1 cut(s)	1247
BstSCI	CCNGG	7 cut(s)	306, 689, 950, 1852, 2065, 2304, 2305
BstSFI	CTRYAG	2 cut(s)	156, 2071
BstSNI	TACGTA	1 cut(s)	2154
BstUI	CGCG	2 cut(s)	1293, 1490
BstV1I	GCAGC	7 cut(s)	300, 652, 1198, 1591, 1937, 2057, 2173
BstV2I	GAAGAC	2 cut(s)	1706, 1713
BstX2I	RGATCY	4 cut(s)	893, 988, 1093, 1416
BstXI	CCANNNNNNTGG	1 cut(s)	754
BstYI	RGATCY	4 cut(s)	893, 988, 1093, 1416
Bsu36I	CCTNAGG	2 cut(s)	491, 993
BsuRI	GGCC	6 cut(s)	395, 732, 739, 902, 1806, 2021
BtgI	CCRYGG	1 cut(s)	1420
BtgZI	GCGATG	2 cut(s)	569, 1793
BtrI	CACGTC	1 cut(s)	1403
BtsCI	GGATG	6 cut(s)	723, 933, 1033, 1543, 1744, 2128
BtsI	GCAGTG	4 cut(s)	759, 764, 903, 1509
BtsIMutI	CAGTG	6 cut(s)	759, 764, 903, 1509, 1869, 2165
Cac8I	GCNNGC	6 cut(s)	771, 1758, 1804, 1888, 1980, 2274
CciI	TCATGA	1 cut(s)	2218
CfoI	GCGC	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	1542
Cfr13I	GGNCC	1 cut(s)	789
Cfr9I	CCCGGG	1 cut(s)	2305
CseI	GACGC	2 cut(s)	326, 1282
Csp6I	GTAC	7 cut(s)	540, 977, 1486, 1966, 2121, 2310, 2371
CviQI	GTAC	7 cut(s)	540, 977, 1486, 1966, 2121, 2310, 2371
DdeI	CTNAG	6 cut(s)	491, 582, 630, 993, 1156, 1410
DraI	TTTAAA	1 cut(s)	2088
EaeI	YGGCCR	3 cut(s)	900, 1804, 2019
Eam1104I	CTCTTC	2 cut(s)	278, 873
EarI	CTCTTC	2 cut(s)	278, 873
Ecl136II	GAGCTC	2 cut(s)	6, 175
Eco105I	TACGTA	1 cut(s)	2154
Eco130I	CCWWGG	2 cut(s)	792, 1420
Eco24I	GRGCYC	3 cut(s)	8, 177, 2055
Eco31I	GGTCTC	1 cut(s)	236
Eco32I	GATATC	2 cut(s)	1176, 1677
Eco47I	GGWCC	1 cut(s)	789
Eco53kI	GAGCTC	2 cut(s)	6, 175
Eco81I	CCTNAGG	2 cut(s)	491, 993
Eco88I	CYCGRG	2 cut(s)	170, 2305
EcoICRI	GAGCTC	2 cut(s)	6, 175
EcoNI	CCTNNNNNAGG	1 cut(s)	1956
EcoO109I	RGGNCCY	1 cut(s)	789
EcoRI	GAATTC	3 cut(s)	955, 1165, 1893
EcoRII	CCWGG	4 cut(s)	689, 950, 1852, 2065
EcoRV	GATATC	2 cut(s)	1176, 1677
EcoT14I	CCWWGG	2 cut(s)	792, 1420
EcoT22I	ATGCAT	2 cut(s)	607, 2418
EcoT38I	GRGCYC	3 cut(s)	8, 177, 2055
ErhI	CCWWGG	2 cut(s)	792, 1420
Esp3I	CGTCTC	1 cut(s)	1255
FalI	AAGNNNNNCTT	2 cut(s)	1698, 1730
FaqI	GGGAC	3 cut(s)	341, 650, 2024
FauI	CCCGC	1 cut(s)	1095
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	7 cut(s)	289, 666, 1212, 1605, 1926, 2071, 2187
FokI	GGATG	6 cut(s)	730, 940, 1040, 1550, 1751, 2115
FriOI	GRGCYC	3 cut(s)	8, 177, 2055
Fsp4HI	GCNGC	7 cut(s)	289, 666, 1212, 1605, 1926, 2071, 2187
FspBI	CTAG	3 cut(s)	834, 872, 2381
FspI	TGCGCA	1 cut(s)	675
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	7 cut(s)	289, 666, 1212, 1605, 1926, 2071, 2187
GsuI	CTGGAG	2 cut(s)	2049, 2180
HaeIII	GGCC	6 cut(s)	395, 732, 739, 902, 1806, 2021
HapII	CCGG	6 cut(s)	307, 561, 740, 1543, 2201, 2306
HgaI	GACGC	2 cut(s)	326, 1282
HhaI	GCGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HindIII	AAGCTT	1 cut(s)	1065
HinfI	GANTC	8 cut(s)	508, 743, 811, 842, 931, 1349, 2092, 2289
HpaII	CCGG	6 cut(s)	307, 561, 740, 1543, 2201, 2306
HphI	GGTGA	4 cut(s)	89, 808, 1375, 2360
Hpy166II	GTNNAC	5 cut(s)	145, 853, 1356, 1507, 2101
Hpy188I	TCNGA	2 cut(s)	803, 1145
Hpy8I	GTNNAC	5 cut(s)	145, 853, 1356, 1507, 2101
Hpy99I	CGWCG	4 cut(s)	320, 326, 341, 1577
HpyAV	CCTTC	8 cut(s)	144, 412, 496, 722, 1025, 1729, 1952, 2385
HpyCH4III	ACNGT	7 cut(s)	230, 943, 1565, 1617, 1712, 1775, 1864
HpyCH4IV	ACGT	4 cut(s)	339, 1402, 1455, 2153
HpyF10VI	GCNNNNNNNGC	7 cut(s)	276, 285, 671, 695, 770, 1073, 2413
HpyF3I	CTNAG	6 cut(s)	491, 582, 630, 993, 1156, 1410
HpySE526I	ACGT	4 cut(s)	339, 1402, 1455, 2153
Hsp92I	GRCGYC	1 cut(s)	318
HspAI	GCGC	1 cut(s)	674
KpnI	GGTACC	1 cut(s)	1969
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	3 cut(s)	1499, 1753, 2242
Lsp1109I	GCAGC	7 cut(s)	300, 652, 1198, 1591, 1937, 2057, 2173
LweI	GCATC	6 cut(s)	592, 708, 1011, 1314, 1830, 2425
MaeI	CTAG	3 cut(s)	834, 872, 2381
MaeII	ACGT	4 cut(s)	339, 1402, 1455, 2153
MaeIII	GTNAC	8 cut(s)	22, 757, 843, 1051, 1310, 1396, 1549, 2383
MbiI	CCGCTC	2 cut(s)	866, 1102
MfeI	CAATTG	2 cut(s)	294, 2246
MflI	RGATCY	4 cut(s)	893, 988, 1093, 1416
MhlI	GDGCHC	4 cut(s)	8, 177, 246, 2055
MlsI	TGGCCA	2 cut(s)	902, 2021
MluNI	TGGCCA	2 cut(s)	902, 2021
MlyI	GAGTC	2 cut(s)	851, 2283
Mox20I	TGGCCA	2 cut(s)	902, 2021
Mph1103I	ATGCAT	2 cut(s)	607, 2418
MroXI	GAANNNNTTC	1 cut(s)	2446
MscI	TGGCCA	2 cut(s)	902, 2021
MseI	TTAA	5 cut(s)	360, 465, 1232, 1307, 2087
MslI	CAYNNNNRTG	8 cut(s)	185, 819, 1077, 1317, 1666, 1773, 1862, 1902
Msp20I	TGGCCA	2 cut(s)	902, 2021
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	6 cut(s)	307, 561, 740, 1543, 2201, 2306
MspR9I	CCNGG	7 cut(s)	308, 691, 952, 1854, 2067, 2306, 2307
MunI	CAATTG	2 cut(s)	294, 2246
Mva1269I	GAATGC	2 cut(s)	630, 1264
MvaI	CCWGG	4 cut(s)	691, 952, 1854, 2067
MvnI	CGCG	2 cut(s)	1293, 1490
MwoI	GCNNNNNNNGC	7 cut(s)	276, 285, 671, 695, 770, 1073, 2413
NciI	CCSGG	3 cut(s)	308, 2306, 2307
NcoI	CCATGG	1 cut(s)	1420
NlaIV	GGNNCC	6 cut(s)	790, 1418, 1755, 1851, 1967, 2423
NmuCI	GTSAC	5 cut(s)	22, 757, 843, 1310, 1549
NsbI	TGCGCA	1 cut(s)	675
NsiI	ATGCAT	2 cut(s)	607, 2418
NspI	RCATGY	3 cut(s)	880, 1076, 1550
NspV	TTCGAA	2 cut(s)	884, 2326
OliI	CACNNNNGTG	2 cut(s)	1317, 1773
PaeR7I	CTCGAG	1 cut(s)	170
PagI	TCATGA	1 cut(s)	2218
PciI	ACATGT	1 cut(s)	876
PciSI	GCTCTTC	1 cut(s)	873
PcsI	WCGNNNNNNNCGW	1 cut(s)	1804
PctI	GAATGC	2 cut(s)	630, 1264
PdmI	GAANNNNTTC	1 cut(s)	2446
PfeI	GAWTC	6 cut(s)	508, 743, 811, 931, 1349, 2092
PflFI	GACNNNGTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	950
PkrI	GCNGC	7 cut(s)	290, 667, 1213, 1606, 1927, 2072, 2188
PleI	GAGTC	2 cut(s)	850, 2283
PpsI	GAGTC	2 cut(s)	850, 2283
Ppu21I	YACGTR	1 cut(s)	2154
PpuMI	RGGWCCY	1 cut(s)	789
PscI	ACATGT	1 cut(s)	876
PshAI	GACNNNNGTC	1 cut(s)	1247
PsiI	TTATAA	2 cut(s)	713, 827
Psp124BI	GAGCTC	2 cut(s)	8, 177
Psp1406I	AACGTT	1 cut(s)	1455
Psp5II	RGGWCCY	1 cut(s)	789
Psp6I	CCWGG	4 cut(s)	689, 950, 1852, 2065
PspGI	CCWGG	4 cut(s)	689, 950, 1852, 2065
PspN4I	GGNNCC	6 cut(s)	790, 1418, 1755, 1851, 1967, 2423
PspPI	GGNCC	1 cut(s)	789
PspPPI	RGGWCCY	1 cut(s)	789
PspXI	VCTCGAGB	1 cut(s)	170
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PstI	CTGCAG	1 cut(s)	2075
PsuI	RGATCY	4 cut(s)	893, 988, 1093, 1416
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	7 cut(s)	541, 978, 1487, 1967, 2122, 2311, 2372
RsaNI	GTAC	7 cut(s)	540, 977, 1486, 1966, 2121, 2310, 2371
RseI	CAYNNNNRTG	8 cut(s)	185, 819, 1077, 1317, 1666, 1773, 1862, 1902
SacI	GAGCTC	2 cut(s)	8, 177
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	5 cut(s)	360, 465, 1232, 1307, 2087
SatI	GCNGC	7 cut(s)	289, 666, 1212, 1605, 1926, 2071, 2187
Sau96I	GGNCC	1 cut(s)	789
ScaI	AGTACT	1 cut(s)	541
SchI	GAGTC	2 cut(s)	851, 2283
ScrFI	CCNGG	7 cut(s)	308, 691, 952, 1854, 2067, 2306, 2307
SduI	GDGCHC	4 cut(s)	8, 177, 246, 2055
SfaNI	GCATC	6 cut(s)	592, 708, 1011, 1314, 1830, 2425
SfcI	CTRYAG	2 cut(s)	156, 2071
Sfr274I	CTCGAG	1 cut(s)	170
SfuI	TTCGAA	2 cut(s)	884, 2326
SinI	GGWCC	1 cut(s)	789
SlaI	CTCGAG	1 cut(s)	170
SmaI	CCCGGG	1 cut(s)	2307
SmiMI	CAYNNNNRTG	8 cut(s)	185, 819, 1077, 1317, 1666, 1773, 1862, 1902
SmlI	CTYRAG	4 cut(s)	170, 464, 1097, 2054
SmoI	CTYRAG	4 cut(s)	170, 464, 1097, 2054
SnaBI	TACGTA	1 cut(s)	2154
SpeI	ACTAGT	1 cut(s)	2380
SsiI	CCGC	4 cut(s)	864, 1102, 1680, 2454
SspI	AATATT	1 cut(s)	1938
SspMI	CTAG	3 cut(s)	834, 872, 2381
SstI	GAGCTC	2 cut(s)	8, 177
StyD4I	CCNGG	7 cut(s)	306, 689, 950, 1852, 2065, 2304, 2305
StyI	CCWWGG	2 cut(s)	792, 1420
TaaI	ACNGT	7 cut(s)	230, 943, 1565, 1617, 1712, 1775, 1864
TaiI	ACGT	4 cut(s)	342, 1405, 1458, 2156
TaqII	GACCGA	1 cut(s)	900
TatI	WGTACW	4 cut(s)	539, 976, 2120, 2370
TfiI	GAWTC	6 cut(s)	508, 743, 811, 931, 1349, 2092
Tru1I	TTAA	5 cut(s)	360, 465, 1232, 1307, 2087
Tru9I	TTAA	5 cut(s)	360, 465, 1232, 1307, 2087
TscAI	CASTG	6 cut(s)	766, 771, 910, 1516, 1869, 2172
TseFI	GTSAC	5 cut(s)	22, 757, 843, 1310, 1549
TseI	GCWGC	7 cut(s)	288, 665, 1211, 1604, 1925, 2070, 2186
Tsp45I	GTSAC	5 cut(s)	22, 757, 843, 1310, 1549
TspGWI	ACGGA	1 cut(s)	1590
TspMI	CCCGGG	1 cut(s)	2305
TspRI	CASTG	6 cut(s)	766, 771, 910, 1516, 1869, 2172
Tth111I	GACNNNGTC	1 cut(s)	320
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	789
XagI	CCTNNNNNAGG	1 cut(s)	1956
XapI	RAATTY	5 cut(s)	571, 955, 1165, 1893, 2209
XbaI	TCTAGA	1 cut(s)	871
XceI	RCATGY	3 cut(s)	880, 1076, 1550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XhoI	CTCGAG	1 cut(s)	170
XmaI	CCCGGG	1 cut(s)	2305
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	2446
XspI	CTAG	3 cut(s)	834, 872, 2381
ZrmI	AGTACT	1 cut(s)	541
Zsp2I	ATGCAT	2 cut(s)	607, 2418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.