Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0015494

Physical Location & Seq

Genomic Coordinates Forward (+)

12038530 .. 12041887

Gene Structure 3358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2484 bp

ATGAGCTCACAGCTCTTGCCAGTCACACCTCTGCTCTCCATTACCAACACCAAAACACCACCACCACCACCACCACCAATATCAACTAGACTTCCAATACCAGCATCAACATCAACATTTCACCAGCTTTCCCAAAGAAACCACATTCCTTCTCATGTCTACAAGCACCCTACAGCCATACTCCTCGAGCTCTGCACTTCCATGAGAGAACTCCACCAAATCTTCCCCCTCATAATCAAGAACGGTCTCTACAACGAGCACTACTTCCAGACCAAGCTCGTCAGCCTCTTCTGCAAATACGGCAGCCCAATTGAAGCCCACCGGGTTTTCGACGCCGTCGGGGACAAACTCGACGTTTTCTACCACACTCTGCTTAAAGGGTATGCCAAGAACTCCTCTTTAGGGGATGCCATTTCCTTCTTTTGCCGATTGAAGCACGATGGGGTTGCCCCTGTTGTGTACAATTTTACTTACTTGCTCAAGGCTTGTGGTGATAATGCTGACCTCAGGAGGGGGAAGGAGATTCATGGCTCTCTGATTACCAATGGCTTTGCTACTAATCTGTTTGCGATGACCGGAGTTGTGAATTTGTATGCCAAATGTAGGCAGATTGATGATGCATATAAGATGTTCGATAGAATGCCTGAGAGGGACTTGGTTTCTTGGAACACTATCGTTGCTGCTTATTCGCAAAATGGGTTGGCCAGGAGAGCTTTGGAGTTGGTTATAAGGATGCAGGAGGAAGGCCAGAGGCCCGATTCCATCACATTGGTCACTGCATTGCCTGCTGTTGCAGATTTTGGGTCCTTGGTGATCGGAAAGTCGATTCATGCCTATGTTATAAGAGCAAGTTTTGAGTCACTTGTGAACATTTCTACTGCTCTTCTAGACATGTATTCGAAATGTGGATCTGTGGCCACTGCTCGGTCGATTTTCAACAGGATGAATCACAAGACTGTTGTTTCCTGGAATTCTATGATAGATGGGTATGTACAAAATGAAGATCCTGAGGAAGCAATGGTGATTTTCCAGAAGATGCTGGATGAAGGCTTTGAACCAACTAACGTTACTATTATGGAAGCTTTACATGCTTGTGCTGATTTGGGAGATCTTGAGCGGGGAAAGTTTGTGCATAAATTATTGGATCAACTGAACCTCGGATATGATGTCTCAGTTGTGAATTCTTTGATATCCATGTATTCCAAGTGTAAGAGAGTTGATATCGCTGCAAAATTGTTTAGAGGCTTAAAAGGTAAGACCATTGTCTCATGGAATGCCATGATATTAGGTTTTGCACAGAATGGTCGCATCAGCGAGGCTTTAAGTCACTTCTGTGAGATGCAATCTCAAAATATAAAGCCAGATTCGTTTACAATGGTGAGTGTAATTCCAGCTCTTGCAGAGTTATCAGTTACACGTCAGGCTAAGTGGATTCATGGACTTGTTGTAAGAAAATGTTTTGACAAAAACGTTTTTGTGATGACTGCTCTTGTTGATATGTACGCAAAATGTGGAGCTGTCCACACTGCGAGAAAACTTTTTGACCTGATGGATGACCGGCATGTGACAACATGGAACAGTATGATCGATGGATATGGAACAAATGGGCTCGGAAAGGCTGCTGTGGAACTGTTCAATGAAATGAAAAAGGGCATAATAAAGCCAAATGATATAACATTTCTCTGTGTGATATCCGCTTGTTCTCATTCAGGATTGGTGGAAGATGGTCTTCAATACTTTGAAAGCATGAAGGATGACTATGGCTTGGAGCCTGCAATGGATCACTATGGTGCCATGGTTGATCTTCTTGGTCGAGCTGGCCGACTAAATGAAGCTTGGGATTTTATTCAAAAGATGCCTATGGAACCTGGCATTACAGTCTTTGGTGCAATGTTAGGGGCTTGCAGAATTCATAAAAATGTTGAATTGGGGGAAAAGGCAGCAGATAAAATATTCGAGTTGAACCCTGTTGAAGGTGGGTACCATGTTTTGCTTGCTAACATATATTCCACAGCTTCAATGTGGGACAAAGTGGCCAAAGTGCGAACAACAATGGAGAAGAAAGGGCTCAAGAAAACTCCAGGCTGCAGTTTGGTGGATTTAAAGAACCAAGTTCACACTTTCTATTCTGGAAGTACAAGCCATCCCCAATCCAAGAGAATATATACGTATCTGGAGACACTGGGAGATAAGATCAAGGCTGCTGGTTATGTGCCGGACACAAATTCAATTCATGATGTGGAAGATGATGTCAAGGAGCAATTGCTAAATAGCCATAGTGAGAAGCTGGCTATTGCATTTGGACTCTTGAATACTACCCCGGGTACAACAATACACATTCGAAAGAACCTACGAGTTTGTGGTGATTGCCACAACGCAACCAAGTACATTTCACTAGTAACTGGAAGGGAAATCATTGTGCGTGATATGCATCGGTTCCATCATTTCAGGAATGGAACTTGTTCTTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

827

Amino Acids

92.29

Weight (kDa)

8.24

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	218 - 259	1.1e-06	PPR repeat family
PPR_2	PF13041	319 - 358	1.9e-10	PPR repeat family
PPR	PF01535	321 - 351	2.8e-09	PPR repeat
PPR_2	PF13041	420 - 467	1.6e-11	PPR repeat family
PPR	PF01535	422 - 452	3.4e-07	PPR repeat
PPR_2	PF13041	522 - 568	2.7e-13	PPR repeat family
PPR	PF01535	524 - 550	5.3e-08	PPR repeat
E_motif	PF20431	638 - 699	8.4e-20	E motif
DYW_deaminase	PF14432	736 - 827	1.9e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0015494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11290
fragaria_vesca	FvH4_7g04350
malus_domestica	MD07G1040900.v1.1
prunus_persica	Prupe.2G049000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329341
rosa_laevigata	RLG00000029901
rosa_multiflora	Rmu_co8161036.1_g000001 Rmu_sc0006184.1_g000011 Rmu_sc0039010.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321210
rosa_rugosa	Rorug01G0078700
rosa_samantha	Rh1AG097000 Rh1BG077600 Rh1DG100500
rosa_wichuraiana	Rw1G007520 Rw1G007580

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	728, 842
Acc65I	GGTACC	1 cut(s)	1980
AccB1I	GGYRCC	2 cut(s)	1790, 1980
AccBSI	CCGCTC	1 cut(s)	1117
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	2 cut(s)	1117, 1695
AclI	AACGTT	2 cut(s)	1065, 1470
AclWI	GGATC	4 cut(s)	916, 998, 1152, 1788
AcoI	YGGCCR	4 cut(s)	702, 915, 1819, 2034
AcsI	RAATTY	5 cut(s)	586, 970, 1180, 1908, 2224
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	7 cut(s)	461, 993, 1502, 1982, 2137, 2326, 2387
AfiI	CCNNNNNNNGG	5 cut(s)	402, 511, 603, 924, 1973
AflIII	ACRYGT	2 cut(s)	891, 1415
AhlI	ACTAGT	1 cut(s)	2395
AjiI	CACGTC	1 cut(s)	1418
AjnI	CCWGG	4 cut(s)	704, 965, 1867, 2080
AleI	CACNNNNGTG	2 cut(s)	1332, 1788
Alw21I	GWGCWC	3 cut(s)	8, 192, 261
Alw26I	GTCTC	4 cut(s)	251, 1174, 1270, 2171
AlwI	GGATC	4 cut(s)	916, 998, 1152, 1788
Ama87I	CYCGRG	2 cut(s)	185, 2320
AoxI	GGCC	6 cut(s)	702, 745, 752, 915, 1819, 2034
ApeKI	GCWGC	7 cut(s)	303, 680, 1226, 1619, 1940, 2085, 2201
ApoI	RAATTY	5 cut(s)	586, 970, 1180, 1908, 2224
Asp700I	GAANNNNTTC	1 cut(s)	2461
Asp718I	GGTACC	1 cut(s)	1980
AspS9I	GGNCC	2 cut(s)	753, 804
AsuC2I	CCSGG	3 cut(s)	323, 2321, 2322
AsuHPI	GGTGA	6 cut(s)	113, 503, 823, 1033, 1390, 2375
AsuII	TTCGAA	2 cut(s)	899, 2341
AvaI	CYCGRG	2 cut(s)	185, 2320
AvaII	GGWCC	1 cut(s)	804
AxyI	CCTNAGG	2 cut(s)	506, 1008
BalI	TGGCCA	3 cut(s)	704, 917, 2036
BanI	GGYRCC	2 cut(s)	1790, 1980
BanII	GRGCYC	4 cut(s)	8, 192, 1611, 2070
BbsI	GAAGAC	1 cut(s)	1721
Bbv12I	GWGCWC	3 cut(s)	8, 192, 261
BbvI	GCAGC	7 cut(s)	315, 667, 1213, 1606, 1952, 2072, 2188
BccI	CCATC	8 cut(s)	434, 770, 977, 1543, 1583, 1718, 2151, 2448
BceAI	ACGGC	2 cut(s)	316, 320
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	4 cut(s)	706, 967, 1869, 2082
BcnI	CCSGG	3 cut(s)	323, 2321, 2322
BcoDI	GTCTC	4 cut(s)	251, 1174, 1270, 2171
BcuI	ACTAGT	1 cut(s)	2395
BfaI	CTAG	3 cut(s)	87, 887, 2396
BfmI	CTRYAG	2 cut(s)	171, 2086
BglII	AGATCT	1 cut(s)	1108
BisI	GCNGC	7 cut(s)	304, 681, 1227, 1620, 1941, 2086, 2202
BlsI	GCNGC	7 cut(s)	305, 682, 1228, 1621, 1942, 2087, 2203
Bme1390I	CCNGG	7 cut(s)	323, 706, 967, 1869, 2082, 2321, 2322
Bme18I	GGWCC	1 cut(s)	804
BmeT110I	CYCGRG	2 cut(s)	185, 2320
BmgBI	CACGTC	1 cut(s)	1418
BmgT120I	GGNCC	2 cut(s)	753, 804
BmiI	GGNNCC	6 cut(s)	805, 1770, 1792, 1866, 1982, 2438
BmrFI	CCNGG	7 cut(s)	323, 706, 967, 1869, 2082, 2321, 2322
BmrI	ACTGGG	1 cut(s)	2192
BmsI	GCATC	9 cut(s)	113, 397, 607, 723, 1026, 1317, 1329, 1845, 2440
BmuI	ACTGGG	1 cut(s)	2192
BoxI	GACNNNNGTC	1 cut(s)	1262
BpiI	GAAGAC	1 cut(s)	1721
BpmI	CTGGAG	2 cut(s)	2064, 2195
Bpu14I	TTCGAA	2 cut(s)	899, 2341
BpuEI	CTTGAG	3 cut(s)	464, 1133, 2054
BpuMI	CCSGG	3 cut(s)	323, 2321, 2322
Bsa29I	ATCGAT	1 cut(s)	1587
BsaAI	YACGTR	1 cut(s)	2169
BsaBI	GATNNNNATC	1 cut(s)	2430
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	5 cut(s)	807, 1156, 1794, 2319, 2320
BsaWI	WCCGGW	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	5 cut(s)	402, 511, 603, 924, 1973
Bse118I	RCCGGY	1 cut(s)	1557
Bse1I	ACTGG	3 cut(s)	20, 2187, 2407
Bse21I	CCTNAGG	2 cut(s)	506, 1008
Bse3DI	GCAATG	4 cut(s)	779, 1023, 1782, 1896
Bse8I	GATNNNNATC	1 cut(s)	2430
BseBI	CCWGG	4 cut(s)	706, 967, 1869, 2082
BseCI	ATCGAT	1 cut(s)	1587
BseDI	CCNNGG	5 cut(s)	807, 1156, 1794, 2319, 2320
BseGI	GGATG	7 cut(s)	412, 738, 948, 1048, 1558, 1759, 2143
BseJI	GATNNNNATC	1 cut(s)	2430
BseLI	CCNNNNNNNGG	5 cut(s)	402, 511, 603, 924, 1973
BseMI	GCAATG	4 cut(s)	779, 1023, 1782, 1896
BseMII	CTCAG	4 cut(s)	520, 636, 999, 1185
BseNI	ACTGG	3 cut(s)	20, 2187, 2407
BseRI	GAGGAG	2 cut(s)	173, 385
BseXI	GCAGC	7 cut(s)	315, 667, 1213, 1606, 1952, 2072, 2188
BsgI	GTGCAG	1 cut(s)	178
Bsh1285I	CGRYCG	1 cut(s)	929
BshFI	GGCC	6 cut(s)	704, 747, 754, 917, 1821, 2036
BshNI	GGYRCC	2 cut(s)	1790, 1980
BshVI	ATCGAT	1 cut(s)	1587
BsiEI	CGRYCG	1 cut(s)	929
BsiHKAI	GWGCWC	3 cut(s)	8, 192, 261
BsiHKCI	CYCGRG	2 cut(s)	185, 2320
BsiSI	CCGG	5 cut(s)	322, 576, 1558, 2216, 2321
BslFI	GGGAC	3 cut(s)	356, 665, 2039
BslI	CCNNNNNNNGG	5 cut(s)	402, 511, 603, 924, 1973
BsmAI	GTCTC	4 cut(s)	251, 1174, 1270, 2171
BsmFI	GGGAC	3 cut(s)	356, 665, 2039
BsmI	GAATGC	2 cut(s)	645, 1279
BsnI	GGCC	6 cut(s)	704, 747, 754, 917, 1821, 2036
Bso31I	GGTCTC	1 cut(s)	251
BsoBI	CYCGRG	2 cut(s)	185, 2320
Bsp119I	TTCGAA	2 cut(s)	899, 2341
Bsp1286I	GDGCHC	5 cut(s)	8, 192, 261, 1611, 2070
Bsp1407I	TGTACA	2 cut(s)	459, 991
Bsp143I	GATC	9 cut(s)	813, 908, 1003, 1108, 1144, 1584, 1780, 1801, 2193
Bsp19I	CCATGG	1 cut(s)	1794
BspACI	CCGC	2 cut(s)	1117, 1695
BspANI	GGCC	6 cut(s)	704, 747, 754, 917, 1821, 2036
BspCNI	CTCAG	4 cut(s)	519, 637, 1000, 1184
BspDI	ATCGAT	1 cut(s)	1587
BspHI	TCATGA	1 cut(s)	2233
BspLI	GGNNCC	6 cut(s)	805, 1770, 1792, 1866, 1982, 2438
BspMAI	CTGCAG	1 cut(s)	2090
BspPI	GGATC	4 cut(s)	916, 998, 1152, 1788
BspQI	GCTCTTC	1 cut(s)	888
BspT104I	TTCGAA	2 cut(s)	899, 2341
BspT107I	GGYRCC	2 cut(s)	1790, 1980
BspTNI	GGTCTC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	1117
BsrDI	GCAATG	4 cut(s)	779, 1023, 1782, 1896
BsrFI	RCCGGY	1 cut(s)	1557
BsrGI	TGTACA	2 cut(s)	459, 991
BsrI	ACTGG	3 cut(s)	20, 2187, 2407
BssAI	RCCGGY	1 cut(s)	1557
BssECI	CCNNGG	5 cut(s)	807, 1156, 1794, 2319, 2320
BssMI	GATC	9 cut(s)	813, 908, 1003, 1108, 1144, 1584, 1780, 1801, 2193
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	807, 1794
Bst2UI	CCWGG	4 cut(s)	706, 967, 1869, 2082
Bst4CI	ACNGT	5 cut(s)	245, 958, 1580, 1632, 1879
Bst6I	CTCTTC	2 cut(s)	293, 888
BstACI	GRCGYC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstAUI	TGTACA	2 cut(s)	459, 991
BstBAI	YACGTR	1 cut(s)	2169
BstBI	TTCGAA	2 cut(s)	899, 2341
BstC8I	GCNNGC	6 cut(s)	786, 1773, 1819, 1903, 1995, 2289
BstDEI	CTNAG	5 cut(s)	506, 645, 1008, 1171, 1425
BstDSI	CCRYGG	1 cut(s)	1794
BstENI	CCTNNNNNAGG	1 cut(s)	1971
BstF5I	GGATG	7 cut(s)	412, 738, 948, 1048, 1558, 1759, 2143
BstKTI	GATC	9 cut(s)	816, 911, 1006, 1111, 1147, 1587, 1783, 1804, 2196
BstMAI	GTCTC	4 cut(s)	251, 1174, 1270, 2171
BstMBI	GATC	9 cut(s)	813, 908, 1003, 1108, 1144, 1584, 1780, 1801, 2193
BstMCI	CGRYCG	1 cut(s)	929
BstMWI	GCNNNNNNNGC	6 cut(s)	291, 300, 710, 785, 1088, 2428
BstNI	CCWGG	4 cut(s)	706, 967, 1869, 2082
BstNSI	RCATGY	3 cut(s)	895, 1091, 1565
BstPAI	GACNNNNGTC	1 cut(s)	1262
BstSCI	CCNGG	7 cut(s)	321, 704, 965, 1867, 2080, 2319, 2320
BstSFI	CTRYAG	2 cut(s)	171, 2086
BstSNI	TACGTA	1 cut(s)	2169
BstV1I	GCAGC	7 cut(s)	315, 667, 1213, 1606, 1952, 2072, 2188
BstV2I	GAAGAC	1 cut(s)	1721
BstX2I	RGATCY	3 cut(s)	908, 1003, 1108
BstXI	CCANNNNNNTGG	1 cut(s)	769
BstYI	RGATCY	3 cut(s)	908, 1003, 1108
Bsu15I	ATCGAT	1 cut(s)	1587
Bsu36I	CCTNAGG	2 cut(s)	506, 1008
BsuRI	GGCC	6 cut(s)	704, 747, 754, 917, 1821, 2036
BsuTUI	ATCGAT	1 cut(s)	1587
BtgI	CCRYGG	1 cut(s)	1794
BtgZI	GCGATG	1 cut(s)	584
BtrI	CACGTC	1 cut(s)	1418
BtsCI	GGATG	7 cut(s)	412, 738, 948, 1048, 1558, 1759, 2143
BtsI	GCAGTG	3 cut(s)	774, 918, 1524
BtsIMutI	CAGTG	4 cut(s)	774, 918, 1524, 2180
Cac8I	GCNNGC	6 cut(s)	786, 1773, 1819, 1903, 1995, 2289
CciI	TCATGA	1 cut(s)	2233
Cfr10I	RCCGGY	1 cut(s)	1557
Cfr13I	GGNCC	2 cut(s)	753, 804
Cfr9I	CCCGGG	1 cut(s)	2320
ClaI	ATCGAT	1 cut(s)	1587
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	7 cut(s)	460, 992, 1501, 1981, 2136, 2325, 2386
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviQI	GTAC	7 cut(s)	460, 992, 1501, 1981, 2136, 2325, 2386
DdeI	CTNAG	5 cut(s)	506, 645, 1008, 1171, 1425
DpnI	GATC	9 cut(s)	815, 910, 1005, 1110, 1146, 1586, 1782, 1803, 2195
DpnII	GATC	9 cut(s)	813, 908, 1003, 1108, 1144, 1584, 1780, 1801, 2193
DraI	TTTAAA	1 cut(s)	2103
EaeI	YGGCCR	4 cut(s)	702, 915, 1819, 2034
Eam1104I	CTCTTC	2 cut(s)	293, 888
EarI	CTCTTC	2 cut(s)	293, 888
Ecl136II	GAGCTC	2 cut(s)	6, 190
Eco105I	TACGTA	1 cut(s)	2169
Eco130I	CCWWGG	2 cut(s)	807, 1794
Eco24I	GRGCYC	4 cut(s)	8, 192, 1611, 2070
Eco31I	GGTCTC	1 cut(s)	251
Eco32I	GATATC	3 cut(s)	1191, 1222, 1692
Eco47I	GGWCC	1 cut(s)	804
Eco53kI	GAGCTC	2 cut(s)	6, 190
Eco81I	CCTNAGG	2 cut(s)	506, 1008
Eco88I	CYCGRG	2 cut(s)	185, 2320
EcoICRI	GAGCTC	2 cut(s)	6, 190
EcoNI	CCTNNNNNAGG	1 cut(s)	1971
EcoO109I	RGGNCCY	1 cut(s)	804
EcoRI	GAATTC	3 cut(s)	970, 1180, 1908
EcoRII	CCWGG	4 cut(s)	704, 965, 1867, 2080
EcoRV	GATATC	3 cut(s)	1191, 1222, 1692
EcoT14I	CCWWGG	2 cut(s)	807, 1794
EcoT22I	ATGCAT	2 cut(s)	622, 2433
EcoT38I	GRGCYC	4 cut(s)	8, 192, 1611, 2070
ErhI	CCWWGG	2 cut(s)	807, 1794
FalI	AAGNNNNNCTT	2 cut(s)	1713, 1745
FaqI	GGGAC	3 cut(s)	356, 665, 2039
FauI	CCCGC	1 cut(s)	1110
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	7 cut(s)	304, 681, 1227, 1620, 1941, 2086, 2202
FokI	GGATG	7 cut(s)	419, 745, 955, 1055, 1565, 1766, 2130
FriOI	GRGCYC	4 cut(s)	8, 192, 1611, 2070
Fsp4HI	GCNGC	7 cut(s)	304, 681, 1227, 1620, 1941, 2086, 2202
FspBI	CTAG	3 cut(s)	87, 887, 2396
GluI	GCNGC	7 cut(s)	304, 681, 1227, 1620, 1941, 2086, 2202
GsuI	CTGGAG	2 cut(s)	2064, 2195
HaeIII	GGCC	6 cut(s)	704, 747, 754, 917, 1821, 2036
HapII	CCGG	5 cut(s)	322, 576, 1558, 2216, 2321
HgaI	GACGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	333
HindIII	AAGCTT	2 cut(s)	1080, 1833
HinfI	GANTC	8 cut(s)	523, 758, 826, 857, 946, 1364, 1432, 2304
HpaII	CCGG	5 cut(s)	322, 576, 1558, 2216, 2321
HphI	GGTGA	6 cut(s)	113, 503, 823, 1033, 1390, 2375
Hpy166II	GTNNAC	6 cut(s)	160, 460, 868, 1371, 1522, 2116
Hpy188I	TCNGA	4 cut(s)	537, 818, 1160, 1613
Hpy8I	GTNNAC	6 cut(s)	160, 460, 868, 1371, 1522, 2116
Hpy99I	CGWCG	3 cut(s)	335, 341, 356
HpyAV	CCTTC	8 cut(s)	159, 427, 511, 737, 1040, 1744, 1967, 2400
HpyCH4III	ACNGT	5 cut(s)	245, 958, 1580, 1632, 1879
HpyCH4IV	ACGT	5 cut(s)	354, 1065, 1417, 1470, 2168
HpyF10VI	GCNNNNNNNGC	6 cut(s)	291, 300, 710, 785, 1088, 2428
HpyF3I	CTNAG	5 cut(s)	506, 645, 1008, 1171, 1425
HpySE526I	ACGT	5 cut(s)	354, 1065, 1417, 1470, 2168
Hsp92I	GRCGYC	1 cut(s)	333
KpnI	GGTACC	1 cut(s)	1984
Kzo9I	GATC	9 cut(s)	813, 908, 1003, 1108, 1144, 1584, 1780, 1801, 2193
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	3 cut(s)	1514, 1768, 2257
Lsp1109I	GCAGC	7 cut(s)	315, 667, 1213, 1606, 1952, 2072, 2188
LweI	GCATC	9 cut(s)	113, 397, 607, 723, 1026, 1317, 1329, 1845, 2440
MaeI	CTAG	3 cut(s)	87, 887, 2396
MaeII	ACGT	5 cut(s)	354, 1065, 1417, 1470, 2168
MaeIII	GTNAC	8 cut(s)	22, 772, 858, 1066, 1325, 1411, 1564, 2398
MalI	GATC	9 cut(s)	815, 910, 1005, 1110, 1146, 1586, 1782, 1803, 2195
MbiI	CCGCTC	1 cut(s)	1117
MboI	GATC	9 cut(s)	813, 908, 1003, 1108, 1144, 1584, 1780, 1801, 2193
MfeI	CAATTG	2 cut(s)	309, 2261
MflI	RGATCY	3 cut(s)	908, 1003, 1108
MhlI	GDGCHC	5 cut(s)	8, 192, 261, 1611, 2070
MlsI	TGGCCA	3 cut(s)	704, 917, 2036
MluNI	TGGCCA	3 cut(s)	704, 917, 2036
MlyI	GAGTC	2 cut(s)	866, 2298
Mox20I	TGGCCA	3 cut(s)	704, 917, 2036
Mph1103I	ATGCAT	2 cut(s)	622, 2433
MroXI	GAANNNNTTC	1 cut(s)	2461
MscI	TGGCCA	3 cut(s)	704, 917, 2036
MseI	TTAA	4 cut(s)	375, 1247, 1322, 2102
MslI	CAYNNNNRTG	6 cut(s)	200, 834, 1092, 1332, 1788, 1917
Msp20I	TGGCCA	3 cut(s)	704, 917, 2036
MspI	CCGG	5 cut(s)	322, 576, 1558, 2216, 2321
MspR9I	CCNGG	7 cut(s)	323, 706, 967, 1869, 2082, 2321, 2322
MunI	CAATTG	2 cut(s)	309, 2261
Mva1269I	GAATGC	2 cut(s)	645, 1279
MvaI	CCWGG	4 cut(s)	706, 967, 1869, 2082
MwoI	GCNNNNNNNGC	6 cut(s)	291, 300, 710, 785, 1088, 2428
NciI	CCSGG	3 cut(s)	323, 2321, 2322
NcoI	CCATGG	1 cut(s)	1794
NdeII	GATC	9 cut(s)	813, 908, 1003, 1108, 1144, 1584, 1780, 1801, 2193
NlaIV	GGNNCC	6 cut(s)	805, 1770, 1792, 1866, 1982, 2438
NmuCI	GTSAC	5 cut(s)	22, 772, 858, 1325, 1564
NsiI	ATGCAT	2 cut(s)	622, 2433
NspI	RCATGY	3 cut(s)	895, 1091, 1565
NspV	TTCGAA	2 cut(s)	899, 2341
OliI	CACNNNNGTG	2 cut(s)	1332, 1788
PaeR7I	CTCGAG	1 cut(s)	185
PagI	TCATGA	1 cut(s)	2233
PciI	ACATGT	1 cut(s)	891
PciSI	GCTCTTC	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	1819
PctI	GAATGC	2 cut(s)	645, 1279
PdmI	GAANNNNTTC	1 cut(s)	2461
PfeI	GAWTC	6 cut(s)	523, 758, 826, 946, 1364, 1432
PflFI	GACNNNGTC	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	965
PkrI	GCNGC	7 cut(s)	305, 682, 1228, 1621, 1942, 2087, 2203
PleI	GAGTC	2 cut(s)	865, 2298
PpsI	GAGTC	2 cut(s)	865, 2298
Ppu21I	YACGTR	1 cut(s)	2169
PpuMI	RGGWCCY	1 cut(s)	804
PscI	ACATGT	1 cut(s)	891
PshAI	GACNNNNGTC	1 cut(s)	1262
PsiI	TTATAA	2 cut(s)	728, 842
Psp124BI	GAGCTC	2 cut(s)	8, 192
Psp1406I	AACGTT	2 cut(s)	1065, 1470
Psp5II	RGGWCCY	1 cut(s)	804
Psp6I	CCWGG	4 cut(s)	704, 965, 1867, 2080
PspGI	CCWGG	4 cut(s)	704, 965, 1867, 2080
PspN4I	GGNNCC	6 cut(s)	805, 1770, 1792, 1866, 1982, 2438
PspPI	GGNCC	2 cut(s)	753, 804
PspPPI	RGGWCCY	1 cut(s)	804
PspXI	VCTCGAGB	1 cut(s)	185
PsrI	GAACNNNNNNTAC	2 cut(s)	233, 265
PstI	CTGCAG	1 cut(s)	2090
PsuI	RGATCY	3 cut(s)	908, 1003, 1108
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	7 cut(s)	461, 993, 1502, 1982, 2137, 2326, 2387
RsaNI	GTAC	7 cut(s)	460, 992, 1501, 1981, 2136, 2325, 2386
RseI	CAYNNNNRTG	6 cut(s)	200, 834, 1092, 1332, 1788, 1917
SacI	GAGCTC	2 cut(s)	8, 192
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	4 cut(s)	375, 1247, 1322, 2102
SatI	GCNGC	7 cut(s)	304, 681, 1227, 1620, 1941, 2086, 2202
Sau3AI	GATC	9 cut(s)	813, 908, 1003, 1108, 1144, 1584, 1780, 1801, 2193
Sau96I	GGNCC	2 cut(s)	753, 804
SchI	GAGTC	2 cut(s)	866, 2298
ScrFI	CCNGG	7 cut(s)	323, 706, 967, 1869, 2082, 2321, 2322
SduI	GDGCHC	5 cut(s)	8, 192, 261, 1611, 2070
SfaNI	GCATC	9 cut(s)	113, 397, 607, 723, 1026, 1317, 1329, 1845, 2440
SfcI	CTRYAG	2 cut(s)	171, 2086
Sfr274I	CTCGAG	1 cut(s)	185
SfuI	TTCGAA	2 cut(s)	899, 2341
SinI	GGWCC	1 cut(s)	804
SlaI	CTCGAG	1 cut(s)	185
SmaI	CCCGGG	1 cut(s)	2322
SmiMI	CAYNNNNRTG	6 cut(s)	200, 834, 1092, 1332, 1788, 1917
SmlI	CTYRAG	4 cut(s)	185, 479, 1112, 2069
SmoI	CTYRAG	4 cut(s)	185, 479, 1112, 2069
SnaBI	TACGTA	1 cut(s)	2169
SpeI	ACTAGT	1 cut(s)	2395
SsiI	CCGC	2 cut(s)	1117, 1695
SspI	AATATT	1 cut(s)	1953
SspMI	CTAG	3 cut(s)	87, 887, 2396
SstI	GAGCTC	2 cut(s)	8, 192
StyD4I	CCNGG	7 cut(s)	321, 704, 965, 1867, 2080, 2319, 2320
StyI	CCWWGG	2 cut(s)	807, 1794
TaaI	ACNGT	5 cut(s)	245, 958, 1580, 1632, 1879
TaiI	ACGT	5 cut(s)	357, 1068, 1420, 1473, 2171
TaqII	GACCGA	1 cut(s)	915
TatI	WGTACW	4 cut(s)	459, 991, 2135, 2385
TfiI	GAWTC	6 cut(s)	523, 758, 826, 946, 1364, 1432
Tru1I	TTAA	4 cut(s)	375, 1247, 1322, 2102
Tru9I	TTAA	4 cut(s)	375, 1247, 1322, 2102
TscAI	CASTG	4 cut(s)	781, 925, 1531, 2187
TseFI	GTSAC	5 cut(s)	22, 772, 858, 1325, 1564
TseI	GCWGC	7 cut(s)	303, 680, 1226, 1619, 1940, 2085, 2201
Tsp45I	GTSAC	5 cut(s)	22, 772, 858, 1325, 1564
TspMI	CCCGGG	1 cut(s)	2320
TspRI	CASTG	4 cut(s)	781, 925, 1531, 2187
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	804
XagI	CCTNNNNNAGG	1 cut(s)	1971
XapI	RAATTY	5 cut(s)	586, 970, 1180, 1908, 2224
XbaI	TCTAGA	1 cut(s)	886
XceI	RCATGY	3 cut(s)	895, 1091, 1565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	712
XhoI	CTCGAG	1 cut(s)	185
XmaI	CCCGGG	1 cut(s)	2320
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	2461
XspI	CTAG	3 cut(s)	87, 887, 2396
Zsp2I	ATGCAT	2 cut(s)	622, 2433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.