Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0015494

Physical Location & Seq

Genomic Coordinates Reverse (-)

12807776 .. 12808819

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0078700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTTCACTACCAATAGTGCATATTTTGTTGCCAGGGATATTGAACTGGGTAATGTTCTTGCCCCGGCTACACCCCTTGATCCGTTCCGGCCTTTATGGAAAGCGATATGGGGGGCTAAGGTACCTGGCAAAGTAGCCATACATGCATGGAAGTGTTGTACTAGTATCTTACCTACGAGATTGGCCTTGAGCAGGAAAGGGTATGTTGGGGACCTAGGATGTTTGTTATGCCCCTCTACTTGTGAAGACTCACTTCACTTGTTCGTCGAATGCCCGTATTCAAATAGCGTGTGGTCTGCAGCAAACATTCAGATTGATCCCAATGGAGTTGTTGAATTCCGAGAGCTGGTGTTGAGGTTAGTTCGAACCCAGACTAAAGAACAATTTGCAAAAACCTTAGTTGTGTTGTGGTCCATTTGGAAGAACAGGAATATGCAACTGTGGGATGATAAATTGCAGCAGCCTAATGATGCTGCAGTTTTCAGTTTGGGTTGGTTGCAAGAATATCAGTCTGCAAATGTGAATGCTCCACAGCCTCAACATCAACAATCCAAACGTTGGTCTGCGCCACCATCGGGAGTTTTGAAGTGTAATGCTGACGGAGCTTTTGTGGCAGATTCAAGAAGGGCAGCCTATGGTCTGGTCTTCCGTAATGAGACTGGGAACTTTCTGGCAGCTGCAGCTGCCCCTTTGAGGCACATGTCGTCTCCCTTTCACACGGAAGTAATGGCTCTGTTGGAGAGCATGCGTCTTGCAGAAACTCTTCATTGTAAGAGTGTCATATTTGAATCTGATTGTTTGCTTTTGATACAAGCTTTAGCCAAGGACGAACCTGACCTGTCTAGCTTGGGTTTGCTGCTTGGAGAGGTAAGGGACTTGTTGCGCAGTAATCTGGAATTTACGGTTTGCTATACACCTCGTGAAGCTAATGTAGTCGCACATAAGCTTGCAAAACATGCTTGTCAAGGGTTAGAAAGTCAAGTGTGGTTTGTTGTTGCTCCCGAATTTATAAGGGATGCCCTTCTAAGTGATTGTAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

347

Amino Acids

38.67

Weight (kDa)

6.75

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	31 - 98	5.1e-13	zinc-binding in reverse transcriptase
RVT_3	PF13456	198 - 320	7e-25	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11290
fragaria_vesca	FvH4_7g04350
malus_domestica	MD07G1040900.v1.1
prunus_persica	Prupe.2G049000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329341
rosa_laevigata	RLG00000029901
rosa_multiflora	Rmu_co8161036.1_g000001 Rmu_sc0006184.1_g000011 Rmu_sc0039010.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321210
rosa_rugosa	Rorug01G0078700
rosa_samantha	Rh1AG097000 Rh1BG077600 Rh1DG100500
rosa_wichuraiana	Rw1G007520 Rw1G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1010
Acc16I	TGCGCA	1 cut(s)	884
Acc65I	GGTACC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	121
AccB7I	CCANNNNNTGG	1 cut(s)	558
AclI	AACGTT	1 cut(s)	556
AclWI	GGATC	2 cut(s)	74, 311
AcsI	RAATTY	3 cut(s)	335, 896, 1004
AdeI	CACNNNGTG	1 cut(s)	920
AfaI	GTAC	2 cut(s)	123, 160
AfiI	CCNNNNNNNGG	5 cut(s)	192, 346, 558, 575, 693
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	6 cut(s)	44, 282, 335, 586, 621, 788
AhlI	ACTAGT	1 cut(s)	161
AjnI	CCWGG	2 cut(s)	32, 124
AluBI	AGCT	8 cut(s)	346, 605, 677, 683, 815, 846, 926, 946
AluI	AGCT	8 cut(s)	346, 605, 677, 683, 815, 846, 926, 946
Alw26I	GTCTC	2 cut(s)	650, 711
AlwI	GGATC	2 cut(s)	74, 311
AoxI	GGCC	2 cut(s)	89, 183
ApoI	RAATTY	3 cut(s)	335, 896, 1004
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
Asp700I	GAANNNNTTC	1 cut(s)	762
Asp718I	GGTACC	1 cut(s)	121
AspA2I	CCTAGG	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	568, 885
AspS9I	GGNCC	2 cut(s)	211, 411
AsuC2I	CCSGG	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	211, 411
AvrII	CCTAGG	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	918
BbsI	GAAGAC	2 cut(s)	252, 637
BccI	CCATC	1 cut(s)	580
BciT130I	CCWGG	2 cut(s)	34, 126
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	2 cut(s)	650, 711
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	3 cut(s)	162, 215, 843
BfmI	CTRYAG	3 cut(s)	297, 474, 678
BlnI	CCTAGG	1 cut(s)	214
Bme1390I	CCNGG	3 cut(s)	34, 65, 126
Bme18I	GGWCC	2 cut(s)	211, 411
BmgT120I	GGNCC	2 cut(s)	211, 411
BmiI	GGNNCC	2 cut(s)	123, 212
BmrFI	CCNGG	3 cut(s)	34, 65, 126
BmrI	ACTGGG	2 cut(s)	56, 669
BmsI	GCATC	2 cut(s)	460, 1006
BmuI	ACTGGG	2 cut(s)	56, 669
BpiI	GAAGAC	2 cut(s)	252, 637
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaJI	CCNNGG	4 cut(s)	33, 63, 214, 822
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	5 cut(s)	192, 346, 558, 575, 693
Bse1I	ACTGG	2 cut(s)	51, 664
Bse8I	GATNNNNATC	1 cut(s)	1035
BseBI	CCWGG	2 cut(s)	34, 126
BseDI	CCNNGG	4 cut(s)	33, 63, 214, 822
BseGI	GGATG	3 cut(s)	224, 451, 1021
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	5 cut(s)	192, 346, 558, 575, 693
BseNI	ACTGG	2 cut(s)	51, 664
BshFI	GGCC	2 cut(s)	91, 185
BshNI	GGYRCC	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	65, 88
BslFI	GGGAC	2 cut(s)	224, 887
BslI	CCNNNNNNNGG	5 cut(s)	192, 346, 558, 575, 693
BsmAI	GTCTC	2 cut(s)	650, 711
BsmBI	CGTCTC	1 cut(s)	711
BsmFI	GGGAC	2 cut(s)	224, 887
BsmI	GAATGC	2 cut(s)	275, 529
BsnI	GGCC	2 cut(s)	91, 185
Bsp119I	TTCGAA	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	79, 316
BspANI	GGCC	2 cut(s)	91, 185
BspLI	GGNNCC	2 cut(s)	123, 212
BspMAI	CTGCAG	3 cut(s)	301, 478, 682
BspPI	GGATC	2 cut(s)	74, 311
BspT104I	TTCGAA	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	51, 664
BssECI	CCNNGG	4 cut(s)	33, 63, 214, 822
BssMI	GATC	2 cut(s)	79, 316
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	2 cut(s)	214, 822
Bst2BI	CACGAG	1 cut(s)	918
Bst2UI	CCWGG	2 cut(s)	34, 126
Bst4CI	ACNGT	2 cut(s)	441, 904
Bst6I	CTCTTC	1 cut(s)	768
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstBI	TTCGAA	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	746, 948
BstDEI	CTNAG	3 cut(s)	117, 397, 1025
BstENI	CCTNNNNNAGG	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	224, 451, 1021
BstHHI	GCGC	2 cut(s)	568, 885
BstKTI	GATC	2 cut(s)	82, 319
BstMAI	GTCTC	2 cut(s)	650, 711
BstMBI	GATC	2 cut(s)	79, 316
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 602, 611, 680, 683, 956
BstNI	CCWGG	2 cut(s)	34, 126
BstNSI	RCATGY	4 cut(s)	146, 703, 748, 959
BstSCI	CCNGG	3 cut(s)	32, 63, 124
BstSFI	CTRYAG	3 cut(s)	297, 474, 678
BstV2I	GAAGAC	2 cut(s)	252, 637
BsuRI	GGCC	2 cut(s)	91, 185
BtsCI	GGATG	3 cut(s)	224, 451, 1021
Cac8I	GCNNGC	2 cut(s)	746, 948
CfoI	GCGC	2 cut(s)	568, 885
Cfr13I	GGNCC	2 cut(s)	211, 411
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	2 cut(s)	122, 159
CviAII	CATG	5 cut(s)	143, 147, 700, 745, 956
CviQI	GTAC	2 cut(s)	122, 159
DdeI	CTNAG	3 cut(s)	117, 397, 1025
DpnI	GATC	2 cut(s)	81, 318
DpnII	GATC	2 cut(s)	79, 316
DraIII	CACNNNGTG	1 cut(s)	920
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Eco130I	CCWWGG	2 cut(s)	214, 822
Eco47I	GGWCC	2 cut(s)	211, 411
EcoNI	CCTNNNNNAGG	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	32, 124
EcoT14I	CCWWGG	2 cut(s)	214, 822
EcoT22I	ATGCAT	1 cut(s)	148
ErhI	CCWWGG	2 cut(s)	214, 822
Esp3I	CGTCTC	1 cut(s)	711
FaeI	CATG	5 cut(s)	146, 150, 703, 748, 959
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	2 cut(s)	224, 887
FatI	CATG	5 cut(s)	142, 146, 699, 744, 955
FokI	GGATG	3 cut(s)	231, 458, 1028
FspBI	CTAG	3 cut(s)	162, 215, 843
FspI	TGCGCA	1 cut(s)	884
GlaI	GCGC	2 cut(s)	567, 884
HaeIII	GGCC	2 cut(s)	91, 185
HapII	CCGG	2 cut(s)	65, 88
HgaI	GACGC	1 cut(s)	737
HhaI	GCGC	2 cut(s)	568, 885
Hin1II	CATG	5 cut(s)	146, 150, 703, 748, 959
Hin6I	GCGC	2 cut(s)	566, 883
HinP1I	GCGC	2 cut(s)	566, 883
HindIII	AAGCTT	2 cut(s)	813, 944
HinfI	GANTC	3 cut(s)	248, 617, 788
HpaII	CCGG	2 cut(s)	65, 88
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	312, 341, 793
Hpy188III	TCNNGA	5 cut(s)	576, 621, 893, 920, 1001
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	618, 1031
HpyCH4III	ACNGT	2 cut(s)	441, 904
HpyCH4IV	ACGT	1 cut(s)	556
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 602, 611, 680, 683, 956
HpyF3I	CTNAG	3 cut(s)	117, 397, 1025
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	5 cut(s)	146, 150, 703, 748, 959
HspAI	GCGC	2 cut(s)	566, 883
KpnI	GGTACC	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	79, 316
LmnI	GCTCC	3 cut(s)	532, 602, 1003
LweI	GCATC	2 cut(s)	460, 1006
MaeI	CTAG	3 cut(s)	162, 215, 843
MaeII	ACGT	1 cut(s)	556
MalI	GATC	2 cut(s)	81, 318
MboI	GATC	2 cut(s)	79, 316
MboII	GAAGA	4 cut(s)	257, 433, 637, 755
MluCI	AATT	5 cut(s)	335, 383, 452, 896, 1004
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	717
MnlI	CCTC	6 cut(s)	244, 348, 546, 687, 859, 927
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	762
MslI	CAYNNNNRTG	1 cut(s)	151
MspA1I	CMGCKG	2 cut(s)	677, 683
MspI	CCGG	2 cut(s)	65, 88
MspR9I	CCNGG	3 cut(s)	34, 65, 126
Mva1269I	GAATGC	2 cut(s)	275, 529
MvaI	CCWGG	2 cut(s)	34, 126
MwoI	GCNNNNNNNGC	6 cut(s)	143, 602, 611, 680, 683, 956
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	79, 316
NlaIII	CATG	5 cut(s)	146, 150, 703, 748, 959
NlaIV	GGNNCC	2 cut(s)	123, 212
NsbI	TGCGCA	1 cut(s)	884
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	4 cut(s)	146, 703, 748, 959
NspV	TTCGAA	1 cut(s)	364
PaeI	GCATGC	1 cut(s)	748
PciI	ACATGT	1 cut(s)	699
PctI	GAATGC	2 cut(s)	275, 529
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	2 cut(s)	617, 788
PflMI	CCANNNNNTGG	1 cut(s)	558
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	211
PscI	ACATGT	1 cut(s)	699
PsiI	TTATAA	1 cut(s)	1010
Psp1406I	AACGTT	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	32, 124
PspGI	CCWGG	2 cut(s)	32, 124
PspN4I	GGNNCC	2 cut(s)	123, 212
PspPI	GGNCC	2 cut(s)	211, 411
PspPPI	RGGWCCY	1 cut(s)	211
PstI	CTGCAG	3 cut(s)	301, 478, 682
PvuII	CAGCTG	2 cut(s)	677, 683
RsaI	GTAC	2 cut(s)	123, 160
RsaNI	GTAC	2 cut(s)	122, 159
RseI	CAYNNNNRTG	1 cut(s)	151
Sau3AI	GATC	2 cut(s)	79, 316
Sau96I	GGNCC	2 cut(s)	211, 411
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	34, 65, 126
SfaNI	GCATC	2 cut(s)	460, 1006
SfcI	CTRYAG	3 cut(s)	297, 474, 678
SfuI	TTCGAA	1 cut(s)	364
SinI	GGWCC	2 cut(s)	211, 411
SmiMI	CAYNNNNRTG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
SpeI	ACTAGT	1 cut(s)	161
SphI	GCATGC	1 cut(s)	748
Sse9I	AATT	5 cut(s)	335, 383, 452, 896, 1004
SspMI	CTAG	3 cut(s)	162, 215, 843
StyD4I	CCNGG	3 cut(s)	32, 63, 124
StyI	CCWWGG	2 cut(s)	214, 822
TaaI	ACNGT	2 cut(s)	441, 904
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	2 cut(s)	267, 364
TasI	AATT	5 cut(s)	335, 383, 452, 896, 1004
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	617, 788
TspDTI	ATGAA	1 cut(s)	755
TspGWI	ACGGA	4 cut(s)	72, 615, 638, 734
Van91I	CCANNNNNTGG	1 cut(s)	558
VpaK11BI	GGWCC	2 cut(s)	211, 411
XagI	CCTNNNNNAGG	1 cut(s)	190
XapI	RAATTY	3 cut(s)	335, 896, 1004
XceI	RCATGY	4 cut(s)	146, 703, 748, 959
XmaJI	CCTAGG	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	3 cut(s)	162, 215, 843
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.