RchiOBHm_Chr1g0335041

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002387
Physical Location & Seq
Reverse (-)
27252657 .. 27258100
5444 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 864 bp
ATGTATCAATTGGTAATGATTGATTTTCAAGCTGCTGAATGGCGGAGACTTGAGGAACCTGCTTCAGAAGTTGGTTTGGAACCCTTATGTGCAATGATTAACAACAATCTGCGCTGCTATGATCTCGCGATGGATCTAAGTAATAGCACTTTGGAAGCTCTTCCAGAAAATTATGCTGAGCAGGTTAACTTTGAAGATACATGCAAAGGTTTCCTAGAGGTCGCAAAGGAAGCTGTGCATCAAACTGTCAGTGTTATTTTTGAAGATCCCGGAGTGCAGGATTTACTTGTGAAGCTTTATCAGAAGGAGTGGTCTGAGGGACAGGTTACTGAGTATCTTGTTGCAACATTTGGTGATTATTTTGCAGATGTAAAGATGTATATTGAAGAAAGATCATTTAGGAGATTTGTTGAGGGTTGTCTGGAGGAAACTGTTGTTTCTGTTGATCATCTTCTCACACAGAAAAACTACATCAAGGAAGAGACCATTGAAAGGATGAGATTAGATGAAGAGGTTCTCATGGACTTTTTTAGGGAGTATTTAAGTGTTTCTAAAGTAGAAAGCAGAGTCACAATACTGAGTGATTTGAGAGAACTTGCTTCAGCAGAGAGCCTGGATACATTCACACTGATTTACACAAATATTCTCGAACATCAACCTGATTGTCCGCCTGAGATTGTTGAGAAGCTTGTTGCATTGCGAGAAGGCATACCGCGAAAGGATGCCAAGGAGGTTGTACAAGAGTGCAAAGAGATATATGAGAATTCTCGCGCCAATGGAAACCCTGCCAAAGCAGGTTTTGTATTTGCAAGAGTTAAGTGCTTATCATCTGCCAAGGCATCGATATGGCGAAAGCTAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec6

Protein Analysis

287

Amino Acids

33.04

Weight (kDa)

4.66

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec6 PF06046 6 - 239 2.1e-50 Exocyst complex component Sec6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 67, 172, 785
AccII CGCG 3 cut(s) 128, 715, 771
AciI CCGC 3 cut(s) 43, 668, 713
AclWI GGATC 2 cut(s) 141, 260
AcsI RAATTY 1 cut(s) 763
AcuI CTGAAG 2 cut(s) 48, 585
AfaI GTAC 1 cut(s) 738
AfiI CCNNNNNNNGG 1 cut(s) 492
AgsI TTSAA 5 cut(s) 29, 194, 263, 386, 491
AjnI CCWGG 1 cut(s) 612
AluBI AGCT 6 cut(s) 32, 158, 233, 295, 688, 856
AluI AGCT 6 cut(s) 32, 158, 233, 295, 688, 856
Alw26I GTCTC 2 cut(s) 40, 476
AlwI GGATC 2 cut(s) 141, 260
ApeKI GCWGC 2 cut(s) 32, 114
ApoI RAATTY 1 cut(s) 763
Asp700I GAANNNNTTC 2 cut(s) 159, 513
AspLEI GCGC 2 cut(s) 114, 773
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 365
BbvI GCAGC 2 cut(s) 19, 101
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 614
BciVI GTATCC 1 cut(s) 610
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 40, 476
BfaI CTAG 1 cut(s) 215
BfuAI ACCTGC 3 cut(s) 67, 172, 785
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 2 cut(s) 33, 115
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 2 cut(s) 34, 116
Bme1390I CCNGG 2 cut(s) 270, 614
BmiI GGNNCC 2 cut(s) 57, 81
BmrFI CCNGG 2 cut(s) 270, 614
BmsI GCATC 3 cut(s) 247, 712, 848
BpmI CTGGAG 1 cut(s) 443
Bpu1102I GCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 270
Bsa29I ATCGAT 1 cut(s) 842
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 726, 834
Bsc4I CCNNNNNNNGG 1 cut(s) 492
Bse3DI GCAATG 2 cut(s) 99, 695
BseBI CCWGG 1 cut(s) 614
BseCI ATCGAT 1 cut(s) 842
BseDI CCNNGG 2 cut(s) 726, 834
BseGI GGATG 2 cut(s) 501, 727
BseLI CCNNNNNNNGG 1 cut(s) 492
BseMI GCAATG 2 cut(s) 99, 695
BseMII CTCAG 5 cut(s) 168, 306, 321, 569, 663
BseXI GCAGC 2 cut(s) 19, 101
BsgI GTGCAG 1 cut(s) 296
Bsh1236I CGCG 3 cut(s) 128, 715, 771
BshVI ATCGAT 1 cut(s) 842
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 492
BsmAI GTCTC 2 cut(s) 40, 476
BsmFI GGGAC 1 cut(s) 333
Bso31I GGTCTC 1 cut(s) 476
Bsp1407I TGTACA 1 cut(s) 736
Bsp143I GATC 5 cut(s) 121, 133, 265, 392, 445
Bsp1720I GCTNAGC 1 cut(s) 177
Bsp68I TCGCGA 1 cut(s) 128
BspACI CCGC 3 cut(s) 43, 668, 713
BspCNI CTCAG 5 cut(s) 169, 307, 322, 570, 664
BspDI ATCGAT 1 cut(s) 842
BspFNI CGCG 3 cut(s) 128, 715, 771
BspLI GGNNCC 2 cut(s) 57, 81
BspMI ACCTGC 3 cut(s) 67, 172, 785
BspPI GGATC 2 cut(s) 141, 260
BspQI GCTCTTC 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 476
BsrDI GCAATG 2 cut(s) 99, 695
BsrGI TGTACA 1 cut(s) 736
BssECI CCNNGG 2 cut(s) 726, 834
BssMI GATC 5 cut(s) 121, 133, 265, 392, 445
BssT1I CCWWGG 2 cut(s) 726, 834
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 2 cut(s) 247, 433
Bst6I CTCTTC 3 cut(s) 165, 474, 504
BstAUI TGTACA 1 cut(s) 736
BstDEI CTNAG 7 cut(s) 137, 177, 315, 330, 578, 672, 861
BstF5I GGATG 2 cut(s) 501, 727
BstFNI CGCG 3 cut(s) 128, 715, 771
BstHHI GCGC 2 cut(s) 114, 773
BstKTI GATC 5 cut(s) 124, 136, 268, 395, 448
BstMAI GTCTC 2 cut(s) 40, 476
BstMBI GATC 5 cut(s) 121, 133, 265, 392, 445
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 614
BstNSI RCATGY 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 268, 612
BstUI CGCG 3 cut(s) 128, 715, 771
BstV1I GCAGC 2 cut(s) 19, 101
BstX2I RGATCY 2 cut(s) 133, 265
BstYI RGATCY 2 cut(s) 133, 265
Bsu15I ATCGAT 1 cut(s) 842
BsuI GTATCC 1 cut(s) 610
BsuTUI ATCGAT 1 cut(s) 842
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 2 cut(s) 501, 727
BtsIMutI CAGTG 2 cut(s) 256, 626
BtuMI TCGCGA 1 cut(s) 128
BveI ACCTGC 3 cut(s) 67, 172, 785
CfoI GCGC 2 cut(s) 114, 773
ClaI ATCGAT 1 cut(s) 842
Csp6I GTAC 1 cut(s) 737
CviAII CATG 2 cut(s) 201, 520
CviJI RGCY 7 cut(s) 32, 158, 233, 295, 612, 688, 856
CviKI_1 RGCY 7 cut(s) 32, 158, 233, 295, 612, 688, 856
CviQI GTAC 1 cut(s) 737
DdeI CTNAG 7 cut(s) 137, 177, 315, 330, 578, 672, 861
DpnI GATC 5 cut(s) 123, 135, 267, 394, 447
DpnII GATC 5 cut(s) 121, 133, 265, 392, 445
Eam1104I CTCTTC 3 cut(s) 165, 474, 504
EarI CTCTTC 3 cut(s) 165, 474, 504
EciI GGCGGA 2 cut(s) 58, 657
Eco130I CCWWGG 2 cut(s) 726, 834
Eco31I GGTCTC 1 cut(s) 476
Eco57I CTGAAG 2 cut(s) 48, 585
EcoRI GAATTC 1 cut(s) 763
EcoRII CCWGG 1 cut(s) 612
EcoT14I CCWWGG 2 cut(s) 726, 834
ErhI CCWWGG 2 cut(s) 726, 834
FaeI CATG 2 cut(s) 204, 523
FaqI GGGAC 1 cut(s) 333
FatI CATG 2 cut(s) 200, 519
FbaI TGATCA 1 cut(s) 445
Fnu4HI GCNGC 2 cut(s) 33, 115
FokI GGATG 2 cut(s) 508, 734
Fsp4HI GCNGC 2 cut(s) 33, 115
FspBI CTAG 1 cut(s) 215
GlaI GCGC 2 cut(s) 113, 772
GluI GCNGC 2 cut(s) 33, 115
GsuI CTGGAG 1 cut(s) 443
HapII CCGG 1 cut(s) 270
HhaI GCGC 2 cut(s) 114, 773
Hin1II CATG 2 cut(s) 204, 523
Hin6I GCGC 2 cut(s) 112, 771
HinP1I GCGC 2 cut(s) 112, 771
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 2 cut(s) 293, 686
HinfI GANTC 1 cut(s) 567
HpaI GTTAAC 1 cut(s) 187
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 67, 303, 316
Hpy188III TCNNGA 4 cut(s) 127, 164, 422, 647
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 298, 698
HpyCH4III ACNGT 2 cut(s) 247, 433
HpyCH4V TGCA 9 cut(s) 92, 204, 238, 277, 344, 365, 695, 747, 809
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 7 cut(s) 137, 177, 315, 330, 578, 672, 861
Hsp92II CATG 2 cut(s) 204, 523
HspAI GCGC 2 cut(s) 112, 771
Ksp22I TGATCA 1 cut(s) 445
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 5 cut(s) 121, 133, 265, 392, 445
LguI GCTCTTC 1 cut(s) 165
Lsp1109I GCAGC 2 cut(s) 19, 101
LweI GCATC 3 cut(s) 247, 712, 848
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 325, 568
MalI GATC 5 cut(s) 123, 135, 267, 394, 447
MboI GATC 5 cut(s) 121, 133, 265, 392, 445
MboII GAAGA 7 cut(s) 152, 206, 275, 398, 443, 491, 521
MfeI CAATTG 1 cut(s) 8
MflI RGATCY 2 cut(s) 133, 265
MluCI AATT 3 cut(s) 8, 169, 763
MlyI GAGTC 1 cut(s) 576
MnlI CCTC 7 cut(s) 46, 211, 310, 406, 418, 505, 724
MroXI GAANNNNTTC 2 cut(s) 159, 513
MseI TTAA 4 cut(s) 99, 186, 542, 816
MslI CAYNNNNRTG 1 cut(s) 844
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 270, 614
MunI CAATTG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 614
MvnI CGCG 3 cut(s) 128, 715, 771
MwoI GCNNNNNNNGC 1 cut(s) 230
NciI CCSGG 1 cut(s) 270
NdeII GATC 5 cut(s) 121, 133, 265, 392, 445
NlaIII CATG 2 cut(s) 204, 523
NlaIV GGNNCC 2 cut(s) 57, 81
NmuCI GTSAC 1 cut(s) 568
NruI TCGCGA 1 cut(s) 128
NspI RCATGY 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 165
PdmI GAANNNNTTC 2 cut(s) 159, 513
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 2 cut(s) 34, 116
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 2 cut(s) 57, 81
PsuI RGATCY 2 cut(s) 133, 265
RruI TCGCGA 1 cut(s) 128
RsaI GTAC 1 cut(s) 738
RsaNI GTAC 1 cut(s) 737
RseI CAYNNNNRTG 1 cut(s) 844
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 4 cut(s) 99, 186, 542, 816
SatI GCNGC 2 cut(s) 33, 115
Sau3AI GATC 5 cut(s) 121, 133, 265, 392, 445
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 2 cut(s) 270, 614
SfaNI GCATC 3 cut(s) 247, 712, 848
SmiMI CAYNNNNRTG 1 cut(s) 844
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 3 cut(s) 8, 169, 763
SsiI CCGC 3 cut(s) 43, 668, 713
SspI AATATT 1 cut(s) 643
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 2 cut(s) 268, 612
StyI CCWWGG 2 cut(s) 726, 834
TaaI ACNGT 2 cut(s) 247, 433
TaqI TCGA 2 cut(s) 648, 842
TasI AATT 3 cut(s) 8, 169, 763
TatI WGTACW 1 cut(s) 736
Tru1I TTAA 4 cut(s) 99, 186, 542, 816
Tru9I TTAA 4 cut(s) 99, 186, 542, 816
TscAI CASTG 2 cut(s) 256, 633
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 2 cut(s) 32, 114
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 1 cut(s) 522
TspRI CASTG 2 cut(s) 256, 633
XapI RAATTY 1 cut(s) 763
XceI RCATGY 1 cut(s) 204
XmnI GAANNNNTTC 2 cut(s) 159, 513
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.