RchiOBHm_Chr1g0337641

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009974
Physical Location & Seq
Forward (+)
29516525 .. 29517085
561 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
ATGCAAAGCAAACTTAGCTGCCGGGAAGGGGGCGTGGAACCTGACAATAACAACAACACCGCCGCCGCTACTCAAGTAGCTGCCAACCCCACTCATGCTCCTGCCCCTACTTTCAACCACCCTCCTTATGCTGAGATGATACACATAGCTATTGCAGCATTGAACGAGAGAGACAGGTCAAGCAGGAGAGCTATAGCTAAGTACATCGAGCACGTCTACTCGAGTCTCCCACCAACTCACTCGGCCTTGTTGACTCGCCATCTCAAACGACTCAAGAACTCTGGTCATCTTGAGATGGTCAAGAAGTCCTACAAGATCCCAGGTCCTCCCAGATCTGACCCTCCACCTCCTCCTGCAACTGACTCTCCTGCTCCTACCTCTGTTGCCTCTCCCGGTCAGCCCCGTGGCTGGCATTGGTGCGATATCAGACTATCACTGATTCACACCAAATATTAG

Protein Analysis

151

Amino Acids

16.58

Weight (kDa)

9.69

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 40 - 101 3.6e-15 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48620 AT3G18035 AT3G18035
fragaria_vesca FvH4_5g17210
malus_domestica MD06G1230400.v1.1 MD14G1235000.v1.1
prunus_persica Prupe.5G231600_v2.0.a1
pyrus_communis pycom06g20160 pycom14g19600
rosa_chinensis RchiOBHm_Chr1g0337641 RchiOBHm_Chr7g0178581
rosa_laevigata RLG00000005435
rosa_multiflora Rmu_sc0002320.1_g000001
rosa_roxburghii Rroxscaffold_3G00274790
rosa_rugosa Rorug06G0418100
rosa_samantha Rh7AG016800 Rh7BG016300 Rh7CG017000 Rh7DG016900 Rh7DG161800
rosa_wichuraiana Rw7G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AciI CCGC 3 cut(s) 60, 63, 66
AclWI GGATC 1 cut(s) 310
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 28, 408
AgsI TTSAA 2 cut(s) 115, 163
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 5 cut(s) 18, 80, 149, 191, 197
AluI AGCT 5 cut(s) 18, 80, 149, 191, 197
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 2 cut(s) 165, 230
AlwI GGATC 1 cut(s) 310
Ama87I CYCGRG 1 cut(s) 220
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 3 cut(s) 18, 80, 155
AspS9I GGNCC 1 cut(s) 323
AsuC2I CCSGG 2 cut(s) 23, 393
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 3 cut(s) 5, 67, 167
BccI CCATC 2 cut(s) 267, 289
BciT130I CCWGG 1 cut(s) 321
BcnI CCSGG 2 cut(s) 23, 393
BcoDI GTCTC 2 cut(s) 165, 230
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 332
BisI GCNGC 5 cut(s) 19, 63, 66, 81, 156
BlsI GCNGC 5 cut(s) 20, 64, 67, 82, 157
Bme1390I CCNGG 3 cut(s) 23, 321, 393
Bme18I GGWCC 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 3 cut(s) 23, 321, 393
BpuEI CTTGAG 3 cut(s) 57, 257, 311
BpuMI CCSGG 2 cut(s) 23, 393
BsaJI CCNNGG 2 cut(s) 319, 403
BsaXI ACNNNNNCTCC 4 cut(s) 82, 112, 349, 379
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 408
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 319, 403
BseLI CCNNNNNNNGG 2 cut(s) 28, 408
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 3 cut(s) 5, 67, 167
BshFI GGCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 2 cut(s) 22, 393
BslI CCNNNNNNNGG 2 cut(s) 28, 408
BsmAI GTCTC 2 cut(s) 165, 230
BsnI GGCC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 2 cut(s) 315, 332
BspACI CCGC 3 cut(s) 60, 63, 66
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 319, 403
BssMI GATC 2 cut(s) 315, 332
Bst2UI CCWGG 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 3 cut(s) 14, 132, 198
BstDSI CCRYGG 1 cut(s) 403
BstKTI GATC 2 cut(s) 318, 335
BstMAI GTCTC 2 cut(s) 165, 230
BstMBI GATC 2 cut(s) 315, 332
BstMWI GCNNNNNNNGC 2 cut(s) 15, 155
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 3 cut(s) 21, 319, 391
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 5, 67, 167
BstX2I RGATCY 2 cut(s) 315, 332
BstYI RGATCY 2 cut(s) 315, 332
BsuRI GGCC 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 403
BtrI CACGTC 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 434
Cac8I GCNNGC 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 95
CviJI RGCY 8 cut(s) 18, 80, 149, 191, 197, 245, 400, 408
CviKI_1 RGCY 8 cut(s) 18, 80, 149, 191, 197, 245, 400, 408
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 14, 132, 198
DpnI GATC 2 cut(s) 317, 334
DpnII GATC 2 cut(s) 315, 332
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 319
EcoRV GATATC 1 cut(s) 424
FaeI CATG 1 cut(s) 98
FaiI YATR 4 cut(s) 96, 129, 146, 194
FatI CATG 1 cut(s) 94
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 5 cut(s) 19, 63, 66, 81, 156
Fsp4HI GCNGC 5 cut(s) 19, 63, 66, 81, 156
GluI GCNGC 5 cut(s) 19, 63, 66, 81, 156
HaeIII GGCC 1 cut(s) 245
HapII CCGG 2 cut(s) 22, 393
Hin1II CATG 1 cut(s) 98
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 5 cut(s) 223, 253, 270, 362, 439
HpaII CCGG 2 cut(s) 22, 393
Hpy166II GTNNAC 2 cut(s) 217, 252
Hpy188I TCNGA 2 cut(s) 337, 428
Hpy188III TCNNGA 3 cut(s) 274, 290, 301
Hpy8I GTNNAC 2 cut(s) 217, 252
HpyAV CCTTC 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 4, 155, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 155
HpyF3I CTNAG 3 cut(s) 14, 132, 198
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 1 cut(s) 98
Kzo9I GATC 2 cut(s) 315, 332
LmnI GCTCC 2 cut(s) 103, 376
Lsp1109I GCAGC 3 cut(s) 5, 67, 167
MaeII ACGT 1 cut(s) 213
MalI GATC 2 cut(s) 317, 334
MboI GATC 2 cut(s) 315, 332
MflI RGATCY 2 cut(s) 315, 332
MhlI GDGCHC 1 cut(s) 213
MlyI GAGTC 4 cut(s) 232, 247, 264, 356
MnlI CCTC 7 cut(s) 132, 336, 351, 357, 360, 388, 397
MspI CCGG 2 cut(s) 22, 393
MspR9I CCNGG 3 cut(s) 23, 321, 393
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 15, 155
NciI CCSGG 2 cut(s) 23, 393
NdeII GATC 2 cut(s) 315, 332
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 39
NmeAIII GCCGAG 1 cut(s) 221
PaeR7I CTCGAG 1 cut(s) 220
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 5 cut(s) 20, 64, 67, 82, 157
PleI GAGTC 4 cut(s) 231, 247, 264, 356
PpsI GAGTC 4 cut(s) 231, 247, 264, 356
PpuMI RGGWCCY 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 323
PspPPI RGGWCCY 1 cut(s) 323
PspXI VCTCGAGB 1 cut(s) 220
PsuI RGATCY 2 cut(s) 315, 332
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SatI GCNGC 5 cut(s) 19, 63, 66, 81, 156
Sau3AI GATC 2 cut(s) 315, 332
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 4 cut(s) 232, 247, 264, 356
ScrFI CCNGG 3 cut(s) 23, 321, 393
SduI GDGCHC 1 cut(s) 213
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 220
SinI GGWCC 1 cut(s) 323
SlaI CTCGAG 1 cut(s) 220
SmlI CTYRAG 4 cut(s) 72, 220, 272, 290
SmoI CTYRAG 4 cut(s) 72, 220, 272, 290
SsiI CCGC 3 cut(s) 60, 63, 66
SspI AATATT 1 cut(s) 452
StyD4I CCNGG 3 cut(s) 21, 319, 391
TaiI ACGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 207, 221
TatI WGTACW 1 cut(s) 201
TauI GCSGC 2 cut(s) 65, 68
TfiI GAWTC 1 cut(s) 439
TscAI CASTG 1 cut(s) 441
TseI GCWGC 3 cut(s) 18, 80, 155
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.