RchiOBHm_Chr1g0340101

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013655
Physical Location & Seq
Forward (+)
31577078 .. 31577548
471 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGGATCAAGCTAACACCGATGATCAGAAGGGAAAGGCTCTGTCTTTCGCCGACGTCAGTACGGCCATAGACAATCGGAGGTTTCTGGGTGATGTGAGCGACATGGACTTGGATCTTCTGGAGCATATCTTACCTCACTGTTCCAAGAAGCAGTTGATCCATATAGAGATGTCCACAAAAGACAGAGATCTAAGTCCAGTGACTGATACGCTGTGGAAGAGTTTCTATGAGAAGGAGTTCGGAATCGAATCCACCAATTCGGTTTCCGAGATAATGAAGGAGTGGAATCTCAAGTTCAAGTGGTCGGAGTTGTACCGGGAGAAATCAAAGAGAGTGAAAAAGGATGAGAAGAAAGAAGATGACAGGAAACTGAGCTGGCAAGTTAGGGTTTGCAAGAAGGTTTCACCATCTTCAATCGATAAAAGAAACTGGCCAAAGAGCAAGTTGATGAAGAAAATTGTTAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

156

Amino Acids

18.4

Weight (kDa)

9.08

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 30 - 124 5.8e-17 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
AclWI GGATC 3 cut(s) 12, 120, 151
AcoI YGGCCR 2 cut(s) 63, 431
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 2 cut(s) 61, 314
AgsI TTSAA 2 cut(s) 298, 414
AluBI AGCT 2 cut(s) 11, 375
AluI AGCT 2 cut(s) 11, 375
AlwI GGATC 3 cut(s) 12, 120, 151
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 63, 431
Asp700I GAANNNNTTC 2 cut(s) 221, 236
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 101, 396
BalI TGGCCA 1 cut(s) 433
BccI CCATC 1 cut(s) 415
BceAI ACGGC 1 cut(s) 78
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 317
BglII AGATCT 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 54
Bse1I ACTGG 2 cut(s) 197, 434
BseCI ATCGAT 1 cut(s) 417
BseGI GGATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 197, 434
BshFI GGCC 2 cut(s) 65, 433
BshVI ATCGAT 1 cut(s) 417
BsiSI CCGG 1 cut(s) 316
BsnI GGCC 2 cut(s) 65, 433
Bsp143I GATC 5 cut(s) 4, 22, 112, 156, 187
BspANI GGCC 2 cut(s) 65, 433
BspCNI CTCAG 1 cut(s) 363
BspDI ATCGAT 1 cut(s) 417
BspPI GGATC 3 cut(s) 12, 120, 151
BsrI ACTGG 2 cut(s) 197, 434
BssMI GATC 5 cut(s) 4, 22, 112, 156, 187
BssNI GRCGYC 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 191, 371
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 5 cut(s) 7, 25, 115, 159, 190
BstMBI GATC 5 cut(s) 4, 22, 112, 156, 187
BstSCI CCNGG 1 cut(s) 315
BstX2I RGATCY 2 cut(s) 112, 187
BstYI RGATCY 2 cut(s) 112, 187
Bsu15I ATCGAT 1 cut(s) 417
BsuRI GGCC 2 cut(s) 65, 433
BsuTUI ATCGAT 1 cut(s) 417
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 136, 204
Cac8I GCNNGC 1 cut(s) 377
CaiI CAGNNNCTG 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 417
Csp6I GTAC 2 cut(s) 60, 313
CviAII CATG 1 cut(s) 103
CviJI RGCY 5 cut(s) 11, 38, 65, 375, 433
CviKI_1 RGCY 5 cut(s) 11, 38, 65, 375, 433
CviQI GTAC 2 cut(s) 60, 313
DdeI CTNAG 2 cut(s) 191, 371
DpnI GATC 5 cut(s) 6, 24, 114, 158, 189
DpnII GATC 5 cut(s) 4, 22, 112, 156, 187
EaeI YGGCCR 2 cut(s) 63, 431
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
FaeI CATG 1 cut(s) 106
FaiI YATR 6 cut(s) 68, 104, 126, 162, 164, 228
FatI CATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 22
FokI GGATG 1 cut(s) 356
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 2 cut(s) 65, 433
HapII CCGG 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 106
HinfI GANTC 3 cut(s) 243, 248, 286
HpaII CCGG 1 cut(s) 316
HphI GGTGA 2 cut(s) 101, 396
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 5 cut(s) 27, 78, 242, 268, 307
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 174
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 22, 226, 271, 391
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 393
HpyF3I CTNAG 2 cut(s) 191, 371
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 5 cut(s) 4, 22, 112, 156, 187
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 7 cut(s) 71, 104, 210, 329, 349, 361, 415
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 199
MalI GATC 5 cut(s) 6, 24, 114, 158, 189
MboI GATC 5 cut(s) 4, 22, 112, 156, 187
MboII GAAGA 6 cut(s) 107, 229, 361, 368, 402, 463
MflI RGATCY 2 cut(s) 112, 187
MlsI TGGCCA 1 cut(s) 433
MluCI AATT 2 cut(s) 256, 456
MluNI TGGCCA 1 cut(s) 433
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 2 cut(s) 72, 144
Mox20I TGGCCA 1 cut(s) 433
MroXI GAANNNNTTC 2 cut(s) 221, 236
MscI TGGCCA 1 cut(s) 433
MseI TTAA 2 cut(s) 462, 469
Msp20I TGGCCA 1 cut(s) 433
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 317
NciI CCSGG 1 cut(s) 317
NdeII GATC 5 cut(s) 4, 22, 112, 156, 187
NlaIII CATG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 199
PdmI GAANNNNTTC 2 cut(s) 221, 236
PfeI GAWTC 3 cut(s) 243, 248, 286
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 2 cut(s) 112, 187
RsaI GTAC 2 cut(s) 61, 314
RsaNI GTAC 2 cut(s) 60, 313
SaqAI TTAA 2 cut(s) 462, 469
Sau3AI GATC 5 cut(s) 4, 22, 112, 156, 187
ScrFI CCNGG 1 cut(s) 317
SetI ASST 6 cut(s) 13, 57, 83, 136, 377, 402
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 256, 456
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 246, 417
TasI AATT 2 cut(s) 256, 456
TfiI GAWTC 3 cut(s) 243, 248, 286
Tru1I TTAA 2 cut(s) 462, 469
Tru9I TTAA 2 cut(s) 462, 469
TscAI CASTG 2 cut(s) 143, 204
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 290, 464
TspRI CASTG 2 cut(s) 143, 204
XmnI GAANNNNTTC 2 cut(s) 221, 236
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.