Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001215.1

Orthogroup ID

OG0013655

Physical Location & Seq

Genomic Coordinates Forward (+)

8879 .. 9328

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001215.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggatcaagctaacaccgatgatcagaagggaaaggctctgtctttcgccgacgtcagtacggccatagacaatcggaggtttctgggtgatgtgagcgacatggacttggatcttctggagcatatcttacctcactgttccaagaagcagttgatccatatagagatgtccacaaaagacagagatctaagtccagtgactgatacgctgtggaagagtttctatgagaagcagttcggaatcgaatccaccaattcggtttccgagataatgaaggagtggaatctcaagttcaagtggtcggagttgtaccgggagaaatcaaagagagtgaaaaaggctgagaagaaagaggatgacacgaaactgagccggcaattgttagggtttgcaacaaggtttcaccatcttcaatcgataaaagaaactgatcaaagagcaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elongin_A

Protein Analysis

149

Amino Acids

17.42

Weight (kDa)

6.97

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13130 FvH4_7g07290
rosa_chinensis	RchiOBHm_Chr1g0337481 RchiOBHm_Chr1g0337681 RchiOBHm_Chr1g0337771 RchiOBHm_Chr1g0340101
rosa_laevigata	RLG00000029260 RLG00000029268
rosa_multiflora	Rmu_sc0001215.1_g000003 Rmu_sc0002772.1_g000015
rosa_roxburghii	Rroxscaffold_4G00313980
rosa_rugosa	Rorug01G0135900.1
rosa_samantha	Rh1AG154900 Rh1AG156500 Rh1DG163100 Rh1DG163300
rosa_wichuraiana	Rw1G012740 Rw1G012830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	57
AclWI	GGATC	3 cut(s)	12, 120, 151
AcoI	YGGCCR	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	2 cut(s)	61, 314
AgsI	TTSAA	2 cut(s)	298, 416
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AlwI	GGATC	3 cut(s)	12, 120, 151
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	63
Asp700I	GAANNNNTTC	2 cut(s)	221, 236
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	101, 398
BccI	CCATC	1 cut(s)	417
BceAI	ACGGC	1 cut(s)	78
BclI	TGATCA	2 cut(s)	22, 433
BcnI	CCSGG	1 cut(s)	317
BglII	AGATCT	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	419
BseGI	GGATG	1 cut(s)	364
BseMII	CTCAG	2 cut(s)	336, 362
BseNI	ACTGG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	419
BsiSI	CCGG	2 cut(s)	316, 376
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	6 cut(s)	4, 22, 112, 156, 187, 433
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	337, 363
BspDI	ATCGAT	1 cut(s)	419
BspPI	GGATC	3 cut(s)	12, 120, 151
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	375
BssMI	GATC	6 cut(s)	4, 22, 112, 156, 187, 433
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	191, 345, 371
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	6 cut(s)	7, 25, 115, 159, 190, 436
BstMBI	GATC	6 cut(s)	4, 22, 112, 156, 187, 433
BstSCI	CCNGG	1 cut(s)	315
BstX2I	RGATCY	2 cut(s)	112, 187
BstYI	RGATCY	2 cut(s)	112, 187
Bsu15I	ATCGAT	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	65
BsuTUI	ATCGAT	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	136, 204
Cac8I	GCNNGC	1 cut(s)	377
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	375
ClaI	ATCGAT	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	60, 313
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	11, 38, 65, 344, 375
CviKI_1	RGCY	5 cut(s)	11, 38, 65, 344, 375
CviQI	GTAC	2 cut(s)	60, 313
DdeI	CTNAG	3 cut(s)	191, 345, 371
DpnI	GATC	6 cut(s)	6, 24, 114, 158, 189, 435
DpnII	GATC	6 cut(s)	4, 22, 112, 156, 187, 433
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	106
FaiI	YATR	6 cut(s)	68, 104, 126, 162, 164, 228
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	2 cut(s)	22, 433
FokI	GGATG	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	316, 376
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	3 cut(s)	243, 248, 286
HpaII	CCGG	2 cut(s)	316, 376
HphI	GGTGA	2 cut(s)	101, 398
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	5 cut(s)	27, 78, 242, 268, 307
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	22, 271
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	395
HpyF3I	CTNAG	3 cut(s)	191, 345, 371
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	375
KroNI	GCCGGC	1 cut(s)	377
Ksp22I	TGATCA	2 cut(s)	22, 433
Kzo9I	GATC	6 cut(s)	4, 22, 112, 156, 187, 433
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	5 cut(s)	71, 104, 210, 329, 389
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	6 cut(s)	6, 24, 114, 158, 189, 435
MboI	GATC	6 cut(s)	4, 22, 112, 156, 187, 433
MboII	GAAGA	4 cut(s)	107, 229, 361, 404
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	2 cut(s)	112, 187
MluCI	AATT	2 cut(s)	256, 380
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	3 cut(s)	72, 144, 349
MroNI	GCCGGC	1 cut(s)	375
MroXI	GAANNNNTTC	2 cut(s)	221, 236
MspI	CCGG	2 cut(s)	316, 376
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	380
NaeI	GCCGGC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	6 cut(s)	4, 22, 112, 156, 187, 433
NgoMIV	GCCGGC	1 cut(s)	375
NlaIII	CATG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	199
PdiI	GCCGGC	1 cut(s)	377
PdmI	GAANNNNTTC	2 cut(s)	221, 236
PfeI	GAWTC	3 cut(s)	243, 248, 286
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	112, 187
RsaI	GTAC	2 cut(s)	61, 314
RsaNI	GTAC	2 cut(s)	60, 313
Sau3AI	GATC	6 cut(s)	4, 22, 112, 156, 187, 433
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	5 cut(s)	13, 57, 83, 136, 404
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	256, 380
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	246, 419
TasI	AATT	2 cut(s)	256, 380
TfiI	GAWTC	3 cut(s)	243, 248, 286
TscAI	CASTG	2 cut(s)	143, 204
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	143, 204
XmnI	GAANNNNTTC	2 cut(s)	221, 236
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.