Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002772.1

Orthogroup ID

OG0013655

Physical Location & Seq

Genomic Coordinates Reverse (-)

59600 .. 60031

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002772.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggatcaagctaacaccaatgatcagaagggaaaggctctgtctttcgccggcgtcagtatggccatagataatcggatgtttctcggcgatgtgagcgacatggacttggatcttctcgagcagatcttacctcacagtttcaagacgcagttgatccatataaagaagtccacaacagacagagatctgagtccagtgactaataagttgtggaagagcttctatgagaagatcgaatcaatctattcagtttcagagataatgaaggagtggaatctcaaatttaagtggtcggagttgtaccaggagaaatcaaaaagagtgaaagaggctgagaagaaagaagatgacaggaaactgagccagcaagttagggtttgcaagaaggttccaccatcttcaagcgacaaaagaaacaggccaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elongin_A

Protein Analysis

143

Amino Acids

16.71

Weight (kDa)

9.23

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13130 FvH4_7g07290
rosa_chinensis	RchiOBHm_Chr1g0337481 RchiOBHm_Chr1g0337681 RchiOBHm_Chr1g0337771 RchiOBHm_Chr1g0340101
rosa_laevigata	RLG00000029260 RLG00000029268
rosa_multiflora	Rmu_sc0001215.1_g000003 Rmu_sc0002772.1_g000015
rosa_roxburghii	Rroxscaffold_4G00313980
rosa_rugosa	Rorug01G0135900.1
rosa_samantha	Rh1AG154900 Rh1AG156500 Rh1DG163100 Rh1DG163300
rosa_wichuraiana	Rw1G012740 Rw1G012830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	12, 120, 151
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	145, 405
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	2 cut(s)	11, 222
AluI	AGCT	2 cut(s)	11, 222
AlwI	GGATC	3 cut(s)	12, 120, 151
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	63, 422
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	65
BccI	CCATC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	308
BclI	TGATCA	1 cut(s)	22
BglII	AGATCT	2 cut(s)	126, 187
Bme1390I	CCNGG	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	182, 327, 353
BseNI	ACTGG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	65, 424
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	51
BsnI	GGCC	2 cut(s)	65, 424
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	7 cut(s)	4, 22, 112, 126, 156, 187, 234
BspANI	GGCC	2 cut(s)	65, 424
BspCNI	CTCAG	3 cut(s)	183, 328, 354
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	3 cut(s)	12, 120, 151
BspQI	GCTCTTC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	7 cut(s)	4, 22, 112, 126, 156, 187, 234
BssNI	GRCGYC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	52, 368
BstDEI	CTNAG	3 cut(s)	191, 336, 362
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	7 cut(s)	7, 25, 115, 129, 159, 190, 237
BstMBI	GATC	7 cut(s)	4, 22, 112, 126, 156, 187, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	306
BstX2I	RGATCY	3 cut(s)	112, 126, 187
BstYI	RGATCY	3 cut(s)	112, 126, 187
BsuRI	GGCC	2 cut(s)	65, 424
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	52, 368
Cfr10I	RCCGGY	1 cut(s)	50
CseI	GACGC	2 cut(s)	43, 157
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	7 cut(s)	11, 38, 65, 222, 335, 366, 424
CviKI_1	RGCY	7 cut(s)	11, 38, 65, 222, 335, 366, 424
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	3 cut(s)	191, 336, 362
DpnI	GATC	7 cut(s)	6, 24, 114, 128, 158, 189, 236
DpnII	GATC	7 cut(s)	4, 22, 112, 126, 156, 187, 234
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	106
FaiI	YATR	6 cut(s)	62, 68, 104, 162, 164, 228
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	22
FokI	GGATG	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	65, 424
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	2 cut(s)	43, 157
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	3 cut(s)	193, 239, 277
HpaII	CCGG	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	5 cut(s)	27, 78, 192, 259, 298
Hpy188III	TCNNGA	2 cut(s)	119, 145
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	3 cut(s)	22, 262, 382
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	3 cut(s)	191, 336, 362
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	7 cut(s)	4, 22, 112, 126, 156, 187, 234
LguI	GCTCTTC	1 cut(s)	212
LpnPI	CCDG	7 cut(s)	64, 210, 293, 320, 340, 380, 406
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	7 cut(s)	6, 24, 114, 128, 158, 189, 236
MboI	GATC	7 cut(s)	4, 22, 112, 126, 156, 187, 234
MboII	GAAGA	6 cut(s)	107, 229, 244, 352, 359, 393
MflI	RGATCY	3 cut(s)	112, 126, 187
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	2 cut(s)	284, 427
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	2 cut(s)	144, 325
Mox20I	TGGCCA	1 cut(s)	65
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	2 cut(s)	288, 430
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	96
NaeI	GCCGGC	1 cut(s)	52
NdeII	GATC	7 cut(s)	4, 22, 112, 126, 156, 187, 234
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	393
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	212
PdiI	GCCGGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	239, 277
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	393
PsuI	RGATCY	3 cut(s)	112, 126, 187
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	288, 430
Sau3AI	GATC	7 cut(s)	4, 22, 112, 126, 156, 187, 234
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	4 cut(s)	13, 136, 224, 393
Sfr274I	CTCGAG	1 cut(s)	119
SgrAI	CRCCGGYG	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	284, 427
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	120, 237
TasI	AATT	2 cut(s)	284, 427
TfiI	GAWTC	2 cut(s)	239, 277
Tru1I	TTAA	2 cut(s)	288, 430
Tru9I	TTAA	2 cut(s)	288, 430
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	204
XapI	RAATTY	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.