RLG00000029260

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013655
Physical Location & Seq
Forward (+)
35536893 .. 35537468
576 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029260

Sequence Viewer

Length: 576 bp
ATGGATCAAGCTAACACCGATGATCAGAAGGGAATGGCTCTGTCTTTCGCCGACGTCAGTACGGCCATAGACAATCGGAGGTTTCTGGGTGATGTGAGCGACATGGACTTGGATCTTCTGGAGCATATCTTACCTCACTGTTCCAAGACGCAGTTGATCCATATAGAGAAGTCCACAAAAGACAGAGATCTAAGTCCAGTGACTGATACGCTGTGGAAGAGTTTCTATGAGAAGGAGTTCGGAATCGAATCCACCAATTCGGTTTCCGAGATAATGAAGGAGTGGAATCTCAAGTTCAAGTGGTCTGAGTTGTACCAAGAGAAATCAAAGAGAGTAAAAGAGGCTGAGAAGAAAGAAGATGACAGGAAACTGAGCCGGCAAGTTAGGGTTTGCAAGAAGGTTCCACCATCTTCAAGCGATAAAAGAAACTGGCCAAAGAGCAAGTTGATGAAGAAAATTATTAAGGATTATTTACGTGAAATGCCTGGAGCTGCGAAACATTCCAGCTATGGAAAAAGAAGAAGAAGAAAGTTGATGAGCTATGAATATTCGAGGTGCCAAGGGTGCTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

192

Amino Acids

22.48

Weight (kDa)

9.38

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 30 - 127 3.3e-17 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 555
AclWI GGATC 3 cut(s) 12, 120, 151
AcoI YGGCCR 2 cut(s) 63, 431
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 2 cut(s) 61, 314
AgsI TTSAA 2 cut(s) 298, 414
AjnI CCWGG 1 cut(s) 484
AjuI GAANNNNNNNTTGG 1 cut(s) 552
AluBI AGCT 4 cut(s) 11, 491, 507, 540
AluI AGCT 4 cut(s) 11, 491, 507, 540
AlwI GGATC 3 cut(s) 12, 120, 151
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 63, 431
ApeKI GCWGC 1 cut(s) 491
Asp700I GAANNNNTTC 2 cut(s) 221, 236
AsuHPI GGTGA 1 cut(s) 101
BalI TGGCCA 1 cut(s) 433
BanI GGYRCC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 478
BccI CCATC 1 cut(s) 415
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 486
BclI TGATCA 1 cut(s) 22
BglII AGATCT 1 cut(s) 187
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
Bme1390I CCNGG 1 cut(s) 486
BmiI GGNNCC 2 cut(s) 402, 557
BmrFI CCNGG 1 cut(s) 486
BpmI CTGGAG 2 cut(s) 140, 507
BpuEI CTTGAG 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 559
Bse118I RCCGGY 1 cut(s) 375
Bse1I ACTGG 2 cut(s) 197, 434
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 559
BseMII CTCAG 3 cut(s) 297, 336, 362
BseNI ACTGG 2 cut(s) 197, 434
BseXI GCAGC 1 cut(s) 478
BshFI GGCC 2 cut(s) 65, 433
BshNI GGYRCC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 376
BsnI GGCC 2 cut(s) 65, 433
Bsp143I GATC 5 cut(s) 4, 22, 112, 156, 187
BspANI GGCC 2 cut(s) 65, 433
BspCNI CTCAG 3 cut(s) 298, 337, 363
BspLI GGNNCC 2 cut(s) 402, 557
BspPI GGATC 3 cut(s) 12, 120, 151
BspT107I GGYRCC 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 375
BsrI ACTGG 2 cut(s) 197, 434
BssAI RCCGGY 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 5 cut(s) 4, 22, 112, 156, 187
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 4 cut(s) 191, 306, 345, 371
BstKTI GATC 5 cut(s) 7, 25, 115, 159, 190
BstMBI GATC 5 cut(s) 4, 22, 112, 156, 187
BstMWI GCNNNNNNNGC 1 cut(s) 564
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 478
BstX2I RGATCY 2 cut(s) 112, 187
BstYI RGATCY 2 cut(s) 112, 187
BsuRI GGCC 2 cut(s) 65, 433
BtsIMutI CAGTG 2 cut(s) 136, 204
Cac8I GCNNGC 1 cut(s) 377
CaiI CAGNNNCTG 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 375
CseI GACGC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 60, 313
CviAII CATG 1 cut(s) 103
CviJI RGCY 9 cut(s) 11, 38, 65, 344, 375, 433, 491, 507, 540
CviKI_1 RGCY 9 cut(s) 11, 38, 65, 344, 375, 433, 491, 507, 540
CviQI GTAC 2 cut(s) 60, 313
DdeI CTNAG 4 cut(s) 191, 306, 345, 371
DpnI GATC 5 cut(s) 6, 24, 114, 158, 189
DpnII GATC 5 cut(s) 4, 22, 112, 156, 187
EaeI YGGCCR 2 cut(s) 63, 431
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 559
FaeI CATG 1 cut(s) 106
FaiI YATR 8 cut(s) 68, 104, 126, 162, 164, 228, 510, 543
FatI CATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 492
Fsp4HI GCNGC 1 cut(s) 492
GluI GCNGC 1 cut(s) 492
GsuI CTGGAG 2 cut(s) 140, 507
HaeIII GGCC 2 cut(s) 65, 433
HapII CCGG 1 cut(s) 376
HgaI GACGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 106
HinfI GANTC 3 cut(s) 243, 248, 286
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 5 cut(s) 27, 78, 242, 268, 307
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 174
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 22, 226, 271, 391
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 54, 475
HpyCH4V TGCA 1 cut(s) 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 564
HpyF3I CTNAG 4 cut(s) 191, 306, 345, 371
HpySE526I ACGT 2 cut(s) 54, 475
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 106
KroI GCCGGC 1 cut(s) 375
KroNI GCCGGC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 5 cut(s) 4, 22, 112, 156, 187
LmnI GCTCC 2 cut(s) 121, 488
LpnPI CCDG 9 cut(s) 71, 104, 210, 349, 389, 415, 471, 498, 517
Lsp1109I GCAGC 1 cut(s) 478
MaeII ACGT 2 cut(s) 54, 475
MaeIII GTNAC 1 cut(s) 199
MalI GATC 5 cut(s) 6, 24, 114, 158, 189
MboI GATC 5 cut(s) 4, 22, 112, 156, 187
MboII GAAGA 9 cut(s) 107, 229, 361, 368, 402, 463, 531, 534, 537
MflI RGATCY 2 cut(s) 112, 187
MlsI TGGCCA 1 cut(s) 433
MluCI AATT 2 cut(s) 256, 456
MluNI TGGCCA 1 cut(s) 433
MnlI CCTC 4 cut(s) 72, 144, 334, 546
Mox20I TGGCCA 1 cut(s) 433
MroNI GCCGGC 1 cut(s) 375
MroXI GAANNNNTTC 2 cut(s) 221, 236
MscI TGGCCA 1 cut(s) 433
MseI TTAA 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 433
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 564
NaeI GCCGGC 1 cut(s) 377
NdeII GATC 5 cut(s) 4, 22, 112, 156, 187
NgoMIV GCCGGC 1 cut(s) 375
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 402, 557
NmuCI GTSAC 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 377
PdmI GAANNNNTTC 2 cut(s) 221, 236
PfeI GAWTC 3 cut(s) 243, 248, 286
PkrI GCNGC 1 cut(s) 493
Ppu21I YACGTR 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 402, 557
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 2 cut(s) 112, 187
RsaI GTAC 2 cut(s) 61, 314
RsaNI GTAC 2 cut(s) 60, 313
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 5 cut(s) 4, 22, 112, 156, 187
ScrFI CCNGG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 256, 456
SspI AATATT 1 cut(s) 548
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 2 cut(s) 57, 478
TaqI TCGA 2 cut(s) 246, 551
TasI AATT 2 cut(s) 256, 456
TfiI GAWTC 3 cut(s) 243, 248, 286
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 2 cut(s) 143, 204
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 290, 464, 558
TspRI CASTG 2 cut(s) 143, 204
XmnI GAANNNNTTC 2 cut(s) 221, 236
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.