Rw1G012830

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013655
Physical Location & Seq
Reverse (-)
28561530 .. 28562005
476 bp
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UTR
Exon/CDS
Intron
Rw1G012830.1

Sequence Viewer

Length: 351 bp
ATGGACTTGGATCTTCTGGAGCATATCTTACCTCACTGTTCCAAGAAGCAGTTGATCCATATAGAGATGTCCACAAAAGACAGAGATCTAAGTCCAGTGACTGATACGCTGTGGAAGAGTTTCTATGAGAAGGAGTTCGGAATCGAATCCACCAATTCGGTTTCCGAGATAATGAAGGAGTGGAATCTCAAGTTCAAGTGGTCGAAGTTGTACCGCAAGTTGATGAAGAAAATTGTTAAAGATTATTTACGTGAAATGTCTGGAGGTGCGAAACATTCGAGCAATGGAAAAAGAAGAGGAAGAAAGTTGATGAGCTATGAATATTCGAGGTGCCAAGGGTGCTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

116

Amino Acids

13.81

Weight (kDa)

9.47

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 1 - 78 1.4e-14 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 330
AciI CCGC 1 cut(s) 214
AclWI GGATC 2 cut(s) 18, 49
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 1 cut(s) 196
AjuI GAANNNNNNNTTGG 1 cut(s) 327
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
AlwI GGATC 2 cut(s) 18, 49
AlwNI CAGNNNCTG 1 cut(s) 101
Asp700I GAANNNNTTC 2 cut(s) 119, 134
BanI GGYRCC 1 cut(s) 330
BglII AGATCT 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 332
BpmI CTGGAG 2 cut(s) 38, 282
BpuEI CTTGAG 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 330
Bsp143I GATC 3 cut(s) 10, 54, 85
BspACI CCGC 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 2 cut(s) 18, 49
BspT107I GGYRCC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 289
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 3 cut(s) 10, 54, 85
BssT1I CCWWGG 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 110, 289
BstBAI YACGTR 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 89
BstKTI GATC 3 cut(s) 13, 57, 88
BstMBI GATC 3 cut(s) 10, 54, 85
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstX2I RGATCY 2 cut(s) 10, 85
BstYI RGATCY 2 cut(s) 10, 85
BtsIMutI CAGTG 2 cut(s) 34, 102
CaiI CAGNNNCTG 1 cut(s) 101
Csp6I GTAC 1 cut(s) 211
CviJI RGCY 1 cut(s) 315
CviKI_1 RGCY 1 cut(s) 315
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 89
DpnI GATC 3 cut(s) 12, 56, 87
DpnII GATC 3 cut(s) 10, 54, 85
Eam1104I CTCTTC 2 cut(s) 110, 289
EarI CTCTTC 2 cut(s) 110, 289
Eco130I CCWWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 334
FaiI YATR 5 cut(s) 24, 60, 62, 126, 318
GsuI CTGGAG 2 cut(s) 38, 282
HinfI GANTC 3 cut(s) 141, 146, 184
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 140, 166
Hpy188III TCNNGA 2 cut(s) 17, 261
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 124, 169
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 250
Kzo9I GATC 3 cut(s) 10, 54, 85
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 2, 108, 246
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 12, 56, 87
MboI GATC 3 cut(s) 10, 54, 85
MboII GAAGA 5 cut(s) 5, 127, 238, 306, 312
MflI RGATCY 2 cut(s) 10, 85
MluCI AATT 2 cut(s) 154, 231
MnlI CCTC 4 cut(s) 42, 257, 290, 321
MroXI GAANNNNTTC 2 cut(s) 119, 134
MseI TTAA 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 339
NdeII GATC 3 cut(s) 10, 54, 85
NlaIV GGNNCC 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 97
PdmI GAANNNNTTC 2 cut(s) 119, 134
PfeI GAWTC 3 cut(s) 141, 146, 184
Ppu21I YACGTR 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 332
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 2 cut(s) 10, 85
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 3 cut(s) 10, 54, 85
SetI ASST 5 cut(s) 34, 253, 268, 317, 332
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 154, 231
SsiI CCGC 1 cut(s) 214
SspI AATATT 1 cut(s) 323
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 253
TaqI TCGA 4 cut(s) 144, 203, 278, 326
TasI AATT 2 cut(s) 154, 231
TfiI GAWTC 3 cut(s) 141, 146, 184
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 41, 102
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 188, 239, 333
TspRI CASTG 2 cut(s) 41, 102
XmnI GAANNNNTTC 2 cut(s) 119, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.