Rh1DG163300

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0013655
Physical Location & Seq
Reverse (-)
33626378 .. 33626635
258 bp
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UTR
Exon/CDS
Intron
Rh1DG163300.1

Sequence Viewer

Length: 258 bp
ATGGCCATAGATAATCGGATGTTTCTCGATAATGTGAGCGACATGGACTTGGATCTTCTCAAGCAGATCTTACCTCACAGTTTCAAGACGCAGTTGATCCATATAGAGAAGTCCACAAAAGACAGAGATCTGAGTCCAGTGACTAATAAGCTGTGGAAGAGTTTCTATGAGAAGATCGAATCAACTGATTCAGTTTCGGAGATAATGAAGGAGCGGAATCTCAAATTTAAGTGGTCGGAGTTGTACCAGGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

85

Amino Acids

10.21

Weight (kDa)

6.09

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 9 - 84 5.3e-11 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 214
AciI CCGC 1 cut(s) 214
AclWI GGATC 2 cut(s) 60, 91
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 1 cut(s) 245
AgsI TTSAA 1 cut(s) 85
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AlwI GGATC 2 cut(s) 60, 91
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 161
BalI TGGCCA 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 248
BglII AGATCT 2 cut(s) 66, 127
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 137
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 5 cut(s) 52, 66, 96, 127, 174
BspACI CCGC 1 cut(s) 214
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 123
BspPI GGATC 2 cut(s) 60, 91
BsrBI CCGCTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 137
BssMI GATC 5 cut(s) 52, 66, 96, 127, 174
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 5 cut(s) 55, 69, 99, 130, 177
BstMBI GATC 5 cut(s) 52, 66, 96, 127, 174
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstX2I RGATCY 3 cut(s) 52, 66, 127
BstYI RGATCY 3 cut(s) 52, 66, 127
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 144
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 43
CviJI RGCY 2 cut(s) 5, 151
CviKI_1 RGCY 2 cut(s) 5, 151
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 131
DpnI GATC 5 cut(s) 54, 68, 98, 129, 176
DpnII GATC 5 cut(s) 52, 66, 96, 127, 174
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 46
FaiI YATR 5 cut(s) 8, 44, 102, 104, 168
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 1 cut(s) 42
FokI GGATG 1 cut(s) 31
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 97
Hin1II CATG 1 cut(s) 46
HinfI GANTC 4 cut(s) 133, 179, 188, 217
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 4 cut(s) 18, 132, 199, 238
Hpy188III TCNNGA 2 cut(s) 26, 85
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 5 cut(s) 52, 66, 96, 127, 174
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 2 cut(s) 150, 233
MaeIII GTNAC 1 cut(s) 139
MalI GATC 5 cut(s) 54, 68, 98, 129, 176
MbiI CCGCTC 1 cut(s) 214
MboI GATC 5 cut(s) 52, 66, 96, 127, 174
MboII GAAGA 3 cut(s) 47, 169, 184
MflI RGATCY 3 cut(s) 52, 66, 127
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 224
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
NdeII GATC 5 cut(s) 52, 66, 96, 127, 174
NlaIII CATG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 3 cut(s) 179, 188, 217
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PsuI RGATCY 3 cut(s) 52, 66, 127
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 5 cut(s) 52, 66, 96, 127, 174
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 248
SetI ASST 2 cut(s) 76, 153
SgeI CNNG 6 cut(s) 38, 55, 61, 73, 97, 149
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 224
SsiI CCGC 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 2 cut(s) 27, 177
TasI AATT 1 cut(s) 224
TfiI GAWTC 3 cut(s) 179, 188, 217
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 221
TspRI CASTG 1 cut(s) 144
XapI RAATTY 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.