RchiOBHm_Chr1g0354591

Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005369
Physical Location & Seq
Reverse (-)
47493222 .. 47495511
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGCCTCTAGGAATCTTTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCAGCTCCTGGCAATTCCACCCAGAAGCAAAACAGAAGAAGGTATGTCAATTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTCAACAATTCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGTCTTTACACCCATACGCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
Photo_RC

Protein Analysis

128

Amino Acids

14.52

Weight (kDa)

6.2

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Photo_RC PF00124 1 - 123 1.9e-23 Photosynthetic reaction centre protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AccBSI CCGCTC 1 cut(s) 281
AciI CCGC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 295
AfaI GTAC 1 cut(s) 22
AgsI TTSAA 2 cut(s) 28, 325
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 3 cut(s) 50, 111, 356
AluI AGCT 3 cut(s) 50, 111, 356
Alw21I GWGCWC 1 cut(s) 57
AlwNI CAGNNNCTG 1 cut(s) 114
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 2 cut(s) 108, 356
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 120, 343
BciT130I CCWGG 1 cut(s) 115
BclI TGATCA 1 cut(s) 198
BfaI CTAG 4 cut(s) 8, 86, 192, 318
BisI GCNGC 3 cut(s) 109, 279, 357
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 3 cut(s) 110, 280, 358
Bme1390I CCNGG 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 115
Bpu1102I GCTNAGC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 120, 343
BshFI GGCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 57
BsnI GGCC 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 198
Bsp1720I GCTNAGC 1 cut(s) 51
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 281
BssMI GATC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 51, 352
BstEII GGTNACC 1 cut(s) 184
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 85
BstPI GGTNACC 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 120, 343
BsuRI GGCC 1 cut(s) 297
BtsCI GGATG 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 114
CciI TCATGA 1 cut(s) 33
Csp6I GTAC 1 cut(s) 21
CviAII CATG 4 cut(s) 34, 82, 173, 284
CviJI RGCY 6 cut(s) 50, 95, 111, 278, 297, 356
CviKI_1 RGCY 6 cut(s) 50, 95, 111, 278, 297, 356
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 2 cut(s) 51, 352
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 184
EcoO65I GGTNACC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 174
FaeI CATG 4 cut(s) 37, 85, 176, 287
FatI CATG 4 cut(s) 33, 81, 172, 283
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 3 cut(s) 109, 279, 357
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 3 cut(s) 109, 279, 357
FspBI CTAG 4 cut(s) 8, 86, 192, 318
GluI GCNGC 3 cut(s) 109, 279, 357
HaeIII GGCC 1 cut(s) 297
Hin1II CATG 4 cut(s) 37, 85, 176, 287
HinfI GANTC 3 cut(s) 12, 221, 243
Hpy188III TCNNGA 2 cut(s) 34, 251
HpyAV CCTTC 2 cut(s) 139, 227
HpyCH4V TGCA 2 cut(s) 70, 172
HpyF3I CTNAG 2 cut(s) 51, 352
Hsp92II CATG 4 cut(s) 37, 85, 176, 287
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 5 cut(s) 81, 100, 127, 141, 187
Lsp1109I GCAGC 2 cut(s) 120, 343
MaeI CTAG 4 cut(s) 8, 86, 192, 318
MaeIII GTNAC 2 cut(s) 184, 236
MalI GATC 1 cut(s) 200
MbiI CCGCTC 1 cut(s) 281
MboI GATC 1 cut(s) 198
MboII GAAGA 3 cut(s) 154, 269, 340
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 3 cut(s) 119, 155, 328
MnlI CCTC 3 cut(s) 15, 199, 247
Mph1103I ATGCAT 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
NdeII GATC 1 cut(s) 198
NlaIII CATG 4 cut(s) 37, 85, 176, 287
NsiI ATGCAT 1 cut(s) 174
NspI RCATGY 1 cut(s) 85
PagI TCATGA 1 cut(s) 33
PfeI GAWTC 3 cut(s) 12, 221, 243
PkrI GCNGC 3 cut(s) 110, 280, 358
PsiI TTATAA 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 114
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 65
SatI GCNGC 3 cut(s) 109, 279, 357
Sau3AI GATC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 57
SetI ASST 7 cut(s) 52, 91, 113, 150, 191, 238, 358
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 3 cut(s) 119, 155, 328
SsiI CCGC 1 cut(s) 279
SspMI CTAG 4 cut(s) 8, 86, 192, 318
StyD4I CCNGG 1 cut(s) 113
TaqII GACCGA 1 cut(s) 236
TasI AATT 3 cut(s) 119, 155, 328
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 3 cut(s) 12, 221, 243
TseI GCWGC 2 cut(s) 108, 356
TspDTI ATGAA 3 cut(s) 22, 234, 246
XceI RCATGY 1 cut(s) 85
XspI CTAG 4 cut(s) 8, 86, 192, 318
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.