RchiOBHm_Chr1g0356451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007895
Physical Location & Seq
Reverse (-)
48931716 .. 48933402
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
ATGGGGCAAGAAATCCTCACAAACCTTCGATCCGCCGCCGAACGACTTGTCGAAGATGGAGTTATCGGAGATCCAGGCCGAGATGATGAAGCGGCATTCCGGGCCGGTTTTCGGGTTCATCAAGCTCTGACTCGGCGTCAAACGGACTCGGGTATTAGGAACGGCGTTGATATGGTGGCTGAGATTGCTACGAAATGGAGTAAAGTTCTGAGAACTGGATCTATTGGGGTACGGTTCATGGGTGTTGATATGAGCACGATCATGGTCACCATGGAAAGAGGCCAAGACATGGCAGAGTTGAAGGAGTTCGTGTTGAACCAACCAGAGGCCTACGAGATAAAGATTGGAGATCAAGTTTTTCGAAGACCTGGAGATCCTCCTTTAGACCAAGTCGTTGAGAAGCTCCAGAATGAGAGAACGAGAATCGAGAATGACGGTTCAACAGAGAGCAATAGGCAAGTGAAAGAGGAACTGTATTTTTGTGTTACCACATTTTATGAAATGCAATGGAATGGCCCCTTATGTAACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mesd

Protein Analysis

177

Amino Acids

20.05

Weight (kDa)

4.89

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 289
AciI CCGC 3 cut(s) 33, 36, 92
AclWI GGATC 4 cut(s) 24, 65, 226, 368
AcyI GRCGYC 1 cut(s) 136
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 3 cut(s) 111, 289, 325
AgsI TTSAA 3 cut(s) 301, 316, 441
AhdI GACNNNNNGTC 1 cut(s) 135
AjnI CCWGG 2 cut(s) 73, 367
AluBI AGCT 2 cut(s) 125, 403
AluI AGCT 2 cut(s) 125, 403
Alw21I GWGCWC 1 cut(s) 257
AlwI GGATC 4 cut(s) 24, 65, 226, 368
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 5 cut(s) 76, 102, 280, 327, 514
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 102, 515
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 259
AsuII TTCGAA 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 370
Bbv12I GWGCWC 1 cut(s) 257
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 75, 369
BcnI CCSGG 1 cut(s) 101
BisI GCNGC 2 cut(s) 36, 93
BlsI GCNGC 2 cut(s) 37, 94
Bme1390I CCNGG 3 cut(s) 75, 101, 369
BmeRI GACNNNNNGTC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 102, 515
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 3 cut(s) 75, 101, 369
BpiI GAAGAC 1 cut(s) 370
BpmI CTGGAG 2 cut(s) 389, 390
Bpu14I TTCGAA 1 cut(s) 361
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 4 cut(s) 296, 326, 339, 369
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 289, 325
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 512
BseBI CCWGG 2 cut(s) 75, 369
BseDI CCNNGG 1 cut(s) 270
BseLI CCNNNNNNNGG 3 cut(s) 111, 289, 325
BseMI GCAATG 1 cut(s) 512
BseMII CTCAG 2 cut(s) 171, 200
BseNI ACTGG 1 cut(s) 220
BshFI GGCC 5 cut(s) 78, 104, 282, 329, 516
BsiHKAI GWGCWC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 2 cut(s) 100, 105
BslI CCNNNNNNNGG 3 cut(s) 111, 289, 325
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 5 cut(s) 78, 104, 282, 329, 516
BsoBI CYCGRG 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 6 cut(s) 29, 70, 218, 258, 349, 373
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 3 cut(s) 33, 36, 92
BspANI GGCC 5 cut(s) 78, 104, 282, 329, 516
BspCNI CTCAG 2 cut(s) 172, 201
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 4 cut(s) 24, 65, 226, 368
BspT104I TTCGAA 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 512
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 6 cut(s) 29, 70, 218, 258, 349, 373
BssNI GRCGYC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 75, 369
Bst4CI ACNGT 3 cut(s) 234, 437, 474
BstACI GRCGYC 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 180, 209
BstDSI CCRYGG 1 cut(s) 270
BstEII GGTNACC 1 cut(s) 265
BstKTI GATC 6 cut(s) 32, 73, 221, 261, 352, 376
BstMBI GATC 6 cut(s) 29, 70, 218, 258, 349, 373
BstMWI GCNNNNNNNGC 2 cut(s) 101, 185
BstNI CCWGG 2 cut(s) 75, 369
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 73, 99, 367
BstV2I GAAGAC 1 cut(s) 370
BstX2I RGATCY 3 cut(s) 70, 218, 373
BstYI RGATCY 3 cut(s) 70, 218, 373
BsuRI GGCC 5 cut(s) 78, 104, 282, 329, 516
BtgI CCRYGG 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 102, 515
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 230
CviAII CATG 4 cut(s) 238, 262, 271, 289
CviJI RGCY 8 cut(s) 78, 104, 125, 179, 282, 329, 403, 516
CviKI_1 RGCY 8 cut(s) 78, 104, 125, 179, 282, 329, 403, 516
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 2 cut(s) 180, 209
DpnI GATC 6 cut(s) 31, 72, 220, 260, 351, 375
DpnII GATC 6 cut(s) 29, 70, 218, 258, 349, 373
DriI GACNNNNNGTC 1 cut(s) 135
Eam1105I GACNNNNNGTC 1 cut(s) 135
EciI GGCGGA 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 148
Eco91I GGTNACC 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 73, 367
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 4 cut(s) 241, 265, 274, 292
FaiI YATR 9 cut(s) 173, 239, 251, 263, 272, 290, 498, 523, 532
FatI CATG 4 cut(s) 237, 261, 270, 288
Fnu4HI GCNGC 2 cut(s) 36, 93
Fsp4HI GCNGC 2 cut(s) 36, 93
GluI GCNGC 2 cut(s) 36, 93
GsuI CTGGAG 2 cut(s) 389, 390
HaeIII GGCC 5 cut(s) 78, 104, 282, 329, 516
HapII CCGG 2 cut(s) 100, 105
HgaI GACGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 136
Hin1II CATG 4 cut(s) 241, 265, 274, 292
HinfI GANTC 3 cut(s) 130, 146, 423
HpaII CCGG 2 cut(s) 100, 105
HphI GGTGA 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 68, 129, 210
Hpy188III TCNNGA 2 cut(s) 406, 427
HpyAV CCTTC 2 cut(s) 35, 295
HpyCH4III ACNGT 3 cut(s) 234, 437, 474
HpyCH4V TGCA 1 cut(s) 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 185
HpyF3I CTNAG 2 cut(s) 180, 209
Hsp92I GRCGYC 1 cut(s) 136
Hsp92II CATG 4 cut(s) 241, 265, 274, 292
Kzo9I GATC 6 cut(s) 29, 70, 218, 258, 349, 373
LmnI GCTCC 1 cut(s) 408
LpnPI CCDG 9 cut(s) 60, 87, 113, 118, 201, 336, 354, 381, 419
MaeIII GTNAC 3 cut(s) 265, 484, 524
MalI GATC 6 cut(s) 31, 72, 220, 260, 351, 375
MboI GATC 6 cut(s) 29, 70, 218, 258, 349, 373
MboII GAAGA 2 cut(s) 65, 375
MflI RGATCY 3 cut(s) 70, 218, 373
MhlI GDGCHC 1 cut(s) 257
MlyI GAGTC 2 cut(s) 124, 140
MnlI CCTC 5 cut(s) 26, 272, 319, 387, 460
MroXI GAANNNNTTC 1 cut(s) 305
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 2 cut(s) 100, 105
MspR9I CCNGG 3 cut(s) 75, 101, 369
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 2 cut(s) 75, 369
MwoI GCNNNNNNNGC 2 cut(s) 101, 185
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 270
NdeII GATC 6 cut(s) 29, 70, 218, 258, 349, 373
NlaIII CATG 4 cut(s) 241, 265, 274, 292
NlaIV GGNNCC 1 cut(s) 517
NmeAIII GCCGAG 2 cut(s) 104, 112
NmuCI GTSAC 1 cut(s) 265
NspV TTCGAA 1 cut(s) 361
PceI AGGCCT 1 cut(s) 329
PctI GAATGC 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 423
PflFI GACNNNGTC 1 cut(s) 389
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 2 cut(s) 37, 94
PleI GAGTC 2 cut(s) 124, 140
PpsI GAGTC 2 cut(s) 124, 140
Psp6I CCWGG 2 cut(s) 73, 367
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 73, 367
PspN4I GGNNCC 1 cut(s) 517
PspPI GGNCC 2 cut(s) 102, 515
PsuI RGATCY 3 cut(s) 70, 218, 373
PsyI GACNNNGTC 1 cut(s) 389
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 260
SatI GCNGC 2 cut(s) 36, 93
Sau3AI GATC 6 cut(s) 29, 70, 218, 258, 349, 373
Sau96I GGNCC 2 cut(s) 102, 515
SchI GAGTC 2 cut(s) 124, 140
ScrFI CCNGG 3 cut(s) 75, 101, 369
SduI GDGCHC 1 cut(s) 257
SetI ASST 4 cut(s) 27, 127, 370, 405
SfuI TTCGAA 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 260
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 3 cut(s) 33, 36, 92
StuI AGGCCT 1 cut(s) 329
StyD4I CCNGG 3 cut(s) 73, 99, 367
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 3 cut(s) 234, 437, 474
TaqI TCGA 4 cut(s) 28, 51, 361, 426
TauI GCSGC 2 cut(s) 38, 95
TfiI GAWTC 1 cut(s) 423
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 102, 107, 226, 513
TspGWI ACGGA 1 cut(s) 158
Tth111I GACNNNGTC 1 cut(s) 389
Van91I CCANNNNNTGG 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.