Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Reverse (-)

51229150 .. 51233341

Gene Structure 4192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGAGGGTCAAGCACACAGCTGCCAGGAAAGACCGGATTAAAACCGCTCGCCGGCAACCAGGAGGCTCGCCGGCGCCGGCGCCGTCACTGGGACCTTCTGGAAGGCCTGGAAGGCCGAGGAAAAGTCCGACAAGTCCAGGATCACAGAGGCAGGGGACACCTAGGAGGAATGCCACAACAGGTCCAGAAGCACAGACACAGAGGAAGAAGAGACGTAACAGGCCAGGAACTGTAGCTCTTCGGGAGATTCGTCACTTTCAGAAGTCGGTGAAGCTGGTTATCCCAAGTGCACCTTTCATCAGAGCTGTCAGAGAGATCACCGGTACCTTGTCTAATGATGTTACGCGTTGGACTGCTGAAGCTTTACAGTGTATTCATGAGGCAGCAGAGGATTATCTAGTTCATTTGTTTGAAGATTCAATGCTCTGTGCAATTCATGCAAAGCGTGTTACTCTTATGAGGAAGGATTTTGAGCTGGCTCGTCGTCTTGGAGGGATAGGGAGGCGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

171

Amino Acids

19.13

Weight (kDa)

11.74

Isoelectric Point (pI)

68.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	76 - 164	2.4e-26	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	326
AccB1I	GGYRCC	3 cut(s)	76, 82, 326
AccBSI	CCGCTC	1 cut(s)	50
AccII	CGCG	1 cut(s)	349
AciI	CCGC	2 cut(s)	48, 508
AclWI	GGATC	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	381
AcyI	GRCGYC	2 cut(s)	77, 83
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	2 cut(s)	54, 92
AflIII	ACRYGT	1 cut(s)	347
AgeI	ACCGGT	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	416, 423
AjnI	CCWGG	5 cut(s)	26, 61, 109, 139, 226
AluBI	AGCT	6 cut(s)	23, 239, 277, 308, 365, 478
AluI	AGCT	6 cut(s)	23, 239, 277, 308, 365, 478
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	208
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	3 cut(s)	107, 116, 224
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	23, 386
AsiGI	ACCGGT	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	326
AspA2I	CCTAGG	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	79, 85
AspS9I	GGNCC	2 cut(s)	95, 185
AsuHPI	GGTGA	2 cut(s)	283, 313
AvaII	GGWCC	2 cut(s)	95, 185
AvrII	CCTAGG	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	295
BanI	GGYRCC	3 cut(s)	76, 82, 326
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	10, 398
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	5 cut(s)	28, 63, 111, 141, 228
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	2 cut(s)	165, 401
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	2 cut(s)	80, 86
BglI	GCCNNNNNGGC	1 cut(s)	115
BisI	GCNGC	2 cut(s)	24, 387
BlnI	CCTAGG	1 cut(s)	164
BlsI	GCNGC	2 cut(s)	25, 388
Bme1390I	CCNGG	5 cut(s)	28, 63, 111, 141, 228
Bme18I	GGWCC	2 cut(s)	95, 185
BmgT120I	GGNCC	2 cut(s)	95, 185
BmiI	GGNNCC	4 cut(s)	78, 84, 96, 328
BmrFI	CCNGG	5 cut(s)	28, 63, 111, 141, 228
BmrI	ACTGGG	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	101
BsaHI	GRCGYC	2 cut(s)	77, 83
BsaJI	CCNNGG	2 cut(s)	119, 164
BsaWI	WCCGGW	2 cut(s)	36, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 92
Bse118I	RCCGGY	4 cut(s)	54, 73, 79, 323
Bse1I	ACTGG	1 cut(s)	96
BseBI	CCWGG	5 cut(s)	28, 63, 111, 141, 228
BseDI	CCNNGG	2 cut(s)	119, 164
BseLI	CCNNNNNNNGG	2 cut(s)	54, 92
BseNI	ACTGG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	10, 398
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	3 cut(s)	109, 118, 226
BshNI	GGYRCC	3 cut(s)	76, 82, 326
BshTI	ACCGGT	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	5 cut(s)	37, 55, 74, 80, 324
BslFI	GGGAC	2 cut(s)	108, 172
BslI	CCNNNNNNNGG	2 cut(s)	54, 92
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	2 cut(s)	108, 172
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	109, 118, 226
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	143, 318
BspACI	CCGC	2 cut(s)	48, 508
BspANI	GGCC	3 cut(s)	109, 118, 226
BspFNI	CGCG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	4 cut(s)	78, 84, 96, 328
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	3 cut(s)	76, 82, 326
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	4 cut(s)	54, 73, 79, 323
BsrI	ACTGG	1 cut(s)	96
BssAI	RCCGGY	4 cut(s)	54, 73, 79, 323
BssECI	CCNNGG	2 cut(s)	119, 164
BssMI	GATC	2 cut(s)	143, 318
BssNI	GRCGYC	2 cut(s)	77, 83
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	5 cut(s)	28, 63, 111, 141, 228
Bst4CI	ACNGT	2 cut(s)	235, 372
Bst6I	CTCTTC	2 cut(s)	206, 246
BstACI	GRCGYC	2 cut(s)	77, 83
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstC8I	GCNNGC	6 cut(s)	52, 56, 71, 75, 81, 480
BstFNI	CGCG	1 cut(s)	349
BstH2I	RGCGCY	2 cut(s)	80, 86
BstHHI	GCGC	2 cut(s)	79, 85
BstKTI	GATC	2 cut(s)	146, 321
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	2 cut(s)	143, 318
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 440
BstNI	CCWGG	5 cut(s)	28, 63, 111, 141, 228
BstSCI	CCNGG	5 cut(s)	26, 61, 109, 139, 226
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	10, 398
BsuRI	GGCC	3 cut(s)	109, 118, 226
BtsIMutI	CAGTG	2 cut(s)	89, 377
Cac8I	GCNNGC	6 cut(s)	52, 56, 71, 75, 81, 480
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	2 cut(s)	79, 85
Cfr10I	RCCGGY	4 cut(s)	54, 73, 79, 323
Cfr13I	GGNCC	2 cut(s)	95, 185
Csp6I	GTAC	1 cut(s)	327
CspAI	ACCGGT	1 cut(s)	323
CviAII	CATG	2 cut(s)	380, 440
CviQI	GTAC	1 cut(s)	327
DinI	GGCGCC	2 cut(s)	78, 84
DpnI	GATC	2 cut(s)	145, 320
DpnII	GATC	2 cut(s)	143, 318
Eam1104I	CTCTTC	2 cut(s)	206, 246
EarI	CTCTTC	2 cut(s)	206, 246
Eco130I	CCWWGG	1 cut(s)	164
Eco147I	AGGCCT	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	95, 185
Eco57I	CTGAAG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRII	CCWGG	5 cut(s)	26, 61, 109, 139, 226
EcoT14I	CCWWGG	1 cut(s)	164
EgeI	GGCGCC	2 cut(s)	78, 84
EheI	GGCGCC	2 cut(s)	78, 84
ErhI	CCWWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	2 cut(s)	383, 443
FaiI	YATR	3 cut(s)	381, 441, 461
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	2 cut(s)	108, 172
FatI	CATG	2 cut(s)	379, 439
Fnu4HI	GCNGC	2 cut(s)	24, 387
Fsp4HI	GCNGC	2 cut(s)	24, 387
FspBI	CTAG	2 cut(s)	165, 401
GlaI	GCGC	2 cut(s)	78, 84
GluI	GCNGC	2 cut(s)	24, 387
HaeII	RGCGCY	2 cut(s)	80, 86
HaeIII	GGCC	3 cut(s)	109, 118, 226
HapII	CCGG	5 cut(s)	37, 55, 74, 80, 324
HhaI	GCGC	2 cut(s)	79, 85
Hin1I	GRCGYC	2 cut(s)	77, 83
Hin1II	CATG	2 cut(s)	383, 443
Hin6I	GCGC	2 cut(s)	77, 83
HinP1I	GCGC	2 cut(s)	77, 83
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	2 cut(s)	250, 419
HpaII	CCGG	5 cut(s)	37, 55, 74, 80, 324
HphI	GGTGA	2 cut(s)	283, 313
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	132, 264, 305, 314
Hpy188III	TCNNGA	4 cut(s)	102, 188, 245, 380
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	4 cut(s)	99, 108, 108, 460
HpyCH4III	ACNGT	2 cut(s)	235, 372
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	3 cut(s)	293, 434, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 440
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	2 cut(s)	77, 83
Hsp92II	CATG	2 cut(s)	383, 443
HspAI	GCGC	2 cut(s)	77, 83
KasI	GGCGCC	2 cut(s)	76, 82
KpnI	GGTACC	1 cut(s)	330
KroI	GCCGGC	3 cut(s)	54, 73, 79
KroNI	GCCGGC	3 cut(s)	56, 75, 81
Kzo9I	GATC	2 cut(s)	143, 318
LguI	GCTCTTC	1 cut(s)	246
Lsp1109I	GCAGC	2 cut(s)	10, 398
MaeI	CTAG	2 cut(s)	165, 401
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	5 cut(s)	87, 218, 254, 343, 451
MalI	GATC	2 cut(s)	145, 320
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	2 cut(s)	143, 318
MboII	GAAGA	4 cut(s)	220, 223, 233, 428
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	1 cut(s)	435
MluI	ACGCGT	1 cut(s)	347
Mly113I	GGCGCC	2 cut(s)	77, 83
MmeI	TCCRAC	2 cut(s)	155, 332
MreI	CGCCGGCG	2 cut(s)	73, 79
MroNI	GCCGGC	3 cut(s)	54, 73, 79
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	5 cut(s)	37, 55, 74, 80, 324
MspR9I	CCNGG	5 cut(s)	28, 63, 111, 141, 228
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	5 cut(s)	28, 63, 111, 141, 228
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	115, 440
NaeI	GCCGGC	3 cut(s)	56, 75, 81
NarI	GGCGCC	2 cut(s)	77, 83
NdeII	GATC	2 cut(s)	143, 318
NgoMIV	GCCGGC	3 cut(s)	54, 73, 79
NlaIII	CATG	2 cut(s)	383, 443
NlaIV	GGNNCC	4 cut(s)	78, 84, 96, 328
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	87, 254
PagI	TCATGA	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PctI	GAATGC	1 cut(s)	178
PdiI	GCCGGC	3 cut(s)	56, 75, 81
PfeI	GAWTC	2 cut(s)	250, 419
PfoI	TCCNGGA	1 cut(s)	139
PinAI	ACCGGT	1 cut(s)	323
PkrI	GCNGC	2 cut(s)	25, 388
PluTI	GGCGCC	2 cut(s)	80, 86
PpuMI	RGGWCCY	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	5 cut(s)	26, 61, 109, 139, 226
PspGI	CCWGG	5 cut(s)	26, 61, 109, 139, 226
PspN4I	GGNNCC	4 cut(s)	78, 84, 96, 328
PspPI	GGNCC	2 cut(s)	95, 185
PspPPI	RGGWCCY	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	2 cut(s)	24, 387
Sau3AI	GATC	2 cut(s)	143, 318
Sau96I	GGNCC	2 cut(s)	95, 185
ScrFI	CCNGG	5 cut(s)	28, 63, 111, 141, 228
SduI	GDGCHC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	234
SfiI	GGCCNNNNNGGCC	1 cut(s)	115
SfoI	GGCGCC	2 cut(s)	78, 84
SgrAI	CRCCGGYG	2 cut(s)	73, 79
SinI	GGWCC	2 cut(s)	95, 185
Sse9I	AATT	1 cut(s)	435
SseBI	AGGCCT	1 cut(s)	109
SsiI	CCGC	2 cut(s)	48, 508
SspDI	GGCGCC	2 cut(s)	76, 82
SspMI	CTAG	2 cut(s)	165, 401
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	5 cut(s)	26, 61, 109, 139, 226
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	235, 372
TaiI	ACGT	1 cut(s)	220
TasI	AATT	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	250, 419
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	96, 377
TseFI	GTSAC	2 cut(s)	87, 254
TseI	GCWGC	2 cut(s)	23, 386
Tsp45I	GTSAC	2 cut(s)	87, 254
TspDTI	ATGAA	4 cut(s)	289, 368, 395, 428
TspRI	CASTG	2 cut(s)	96, 377
VneI	GTGCAC	1 cut(s)	291
VpaK11BI	GGWCC	2 cut(s)	95, 185
XmaJI	CCTAGG	1 cut(s)	164
XspI	CTAG	2 cut(s)	165, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.