RchiOBHm_Chr1g0361891
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006017
Physical Location & Seq
Forward (+)
53673744 .. 53674894
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
ATGGTAAATGCTGCTGGAGCAACACAGCAAATGCTGGATCTATTTGACGTTGTCGGAATTGTTCACTTTGGCATAGCTGGCAATGCCAATAACTCTATGTCTATTGGTGATGTTACCATTCCTCAACAGTTTGCTCACACTGGCATATGGGATTGGGTGAACCCAATGGAACTTTGGATCCGGAAGATGTTGCACGTACAATTAGACTTTGAAGTATACAATAATGAACCAAAAGTAGGAGAGAACCTGTTGGGACACATTGGATTTAGAAATGAATGGTTCTATTCTGAGTCCGGGAATCGAACTGGTGCAATGTGTGAATTCGAGTTTGTGTCTACCACAGAAGCCACGCTAGTTGTTGGTCTGAGGGGATCAACAGGCAACACTTTTGTGGACAATGCAGCTTACAGGAACTTCCTTTTTCAAACTTTTCTTGTTTCCTCAGTGGACATGGAAAGCTCGGCTGTAGTAATGACAAGCTTGTCAAATGGCTTCCCGGTGATTGTGATCCGAGGGTTATCAAATTTAGCAGGAAGGCAAGCAGGAGAGAACCCGATTCAGACCTTTGGGCTACTTGCAGCTATAAATGCTTGCAAAGTAGTTGTACAGTTAATCAAGGACCTGCCAGAGGCAGGATATGTATGCATAATCTTAATACTCAAGTCAAGTACGACAATAGAGCAAAAAGAAATTACTGAAGGTCCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

236

Amino Acids

25.86

Weight (kDa)

4.77

Isoelectric Point (pI)

25.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 1 - 206 1.1e-18 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 481
Acc36I ACCTGC 1 cut(s) 630
AccI GTMKAC 2 cut(s) 216, 335
AccIII TCCGGA 1 cut(s) 180
AclWI GGATC 5 cut(s) 45, 172, 185, 379, 502
AcsI RAATTY 2 cut(s) 320, 523
AfaI GTAC 3 cut(s) 198, 606, 670
AfiI CCNNNNNNNGG 3 cut(s) 236, 628, 632
AgsI TTSAA 2 cut(s) 212, 425
AleI CACNNNNGTG 1 cut(s) 389
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
AluBI AGCT 5 cut(s) 77, 404, 459, 480, 581
AluI AGCT 5 cut(s) 77, 404, 459, 480, 581
AlwI GGATC 5 cut(s) 45, 172, 185, 379, 502
Aor13HI TCCGGA 1 cut(s) 180
ApeKI GCWGC 3 cut(s) 11, 401, 578
ApoI RAATTY 2 cut(s) 320, 523
AspS9I GGNCC 2 cut(s) 619, 701
AsuC2I CCSGG 2 cut(s) 295, 497
AsuHPI GGTGA 3 cut(s) 119, 169, 511
AvaII GGWCC 2 cut(s) 619, 701
BamHI GGATCC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 413, 590
BcnI CCSGG 2 cut(s) 295, 497
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 465
BfuAI ACCTGC 1 cut(s) 630
BisI GCNGC 3 cut(s) 12, 402, 579
BlsI GCNGC 3 cut(s) 13, 403, 580
Bme1390I CCNGG 2 cut(s) 295, 497
Bme18I GGWCC 2 cut(s) 619, 701
BmgT120I GGNCC 2 cut(s) 619, 701
BmiI GGNNCC 2 cut(s) 179, 703
BmrFI CCNGG 2 cut(s) 295, 497
BpmI CTGGAG 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 644
BpuMI CCSGG 2 cut(s) 295, 497
BsaAI YACGTR 1 cut(s) 196
BsaBI GATNNNNATC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 511
BsaWI WCCGGW 1 cut(s) 180
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 628, 632
Bse1I ACTGG 2 cut(s) 145, 310
Bse3DI GCAATG 2 cut(s) 88, 318
Bse8I GATNNNNATC 1 cut(s) 506
BseAI TCCGGA 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 511
BseJI GATNNNNATC 1 cut(s) 506
BseLI CCNNNNNNNGG 3 cut(s) 236, 628, 632
BseMI GCAATG 2 cut(s) 88, 318
BseMII CTCAG 3 cut(s) 279, 356, 456
BseNI ACTGG 2 cut(s) 145, 310
BseXI GCAGC 2 cut(s) 413, 590
BsiSI CCGG 3 cut(s) 181, 294, 497
BslFI GGGAC 2 cut(s) 267, 687
BslI CCNNNNNNNGG 3 cut(s) 236, 628, 632
BsmFI GGGAC 2 cut(s) 267, 687
Bsp13I TCCGGA 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 604
Bsp143I GATC 4 cut(s) 37, 177, 371, 507
BspCNI CTCAG 3 cut(s) 280, 357, 455
BspEI TCCGGA 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 179, 703
BspMI ACCTGC 1 cut(s) 630
BspPI GGATC 5 cut(s) 45, 172, 185, 379, 502
BsrDI GCAATG 2 cut(s) 88, 318
BsrGI TGTACA 1 cut(s) 604
BsrI ACTGG 2 cut(s) 145, 310
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 4 cut(s) 37, 177, 371, 507
BssNAI GTATAC 1 cut(s) 217
Bst1107I GTATAC 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 129, 609
BstAUI TGTACA 1 cut(s) 604
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 79, 540, 592
BstDEI CTNAG 3 cut(s) 288, 365, 442
BstENI CCTNNNNNAGG 1 cut(s) 626
BstKTI GATC 4 cut(s) 40, 180, 374, 510
BstMBI GATC 4 cut(s) 37, 177, 371, 507
BstMWI GCNNNNNNNGC 4 cut(s) 17, 78, 83, 587
BstSCI CCNGG 2 cut(s) 293, 495
BstSFI CTRYAG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 413, 590
BstX2I RGATCY 2 cut(s) 37, 177
BstYI RGATCY 2 cut(s) 37, 177
BstZ17I GTATAC 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 138, 450
BveI ACCTGC 1 cut(s) 630
Cac8I GCNNGC 3 cut(s) 79, 540, 592
Cfr13I GGNCC 2 cut(s) 619, 701
Csp6I GTAC 3 cut(s) 197, 605, 669
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 1 cut(s) 451
CviJI RGCY 9 cut(s) 77, 347, 404, 459, 464, 480, 492, 571, 581
CviKI_1 RGCY 9 cut(s) 77, 347, 404, 459, 464, 480, 492, 571, 581
CviQI GTAC 3 cut(s) 197, 605, 669
DdeI CTNAG 3 cut(s) 288, 365, 442
DpnI GATC 4 cut(s) 39, 179, 373, 509
DpnII GATC 4 cut(s) 37, 177, 371, 507
DrdI GACNNNNNNGTC 1 cut(s) 481
DseDI GACNNNNNNGTC 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 619, 701
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoO109I RGGNCCY 2 cut(s) 619, 701
EcoRI GAATTC 1 cut(s) 320
EcoT22I ATGCAT 1 cut(s) 647
FaeI CATG 1 cut(s) 454
FaqI GGGAC 2 cut(s) 267, 687
FatI CATG 1 cut(s) 450
FauNDI CATATG 1 cut(s) 146
FblI GTMKAC 2 cut(s) 216, 335
Fnu4HI GCNGC 3 cut(s) 12, 402, 579
Fsp4HI GCNGC 3 cut(s) 12, 402, 579
FspBI CTAG 1 cut(s) 353
GluI GCNGC 3 cut(s) 12, 402, 579
GsuI CTGGAG 1 cut(s) 36
HapII CCGG 3 cut(s) 181, 294, 497
Hin1II CATG 1 cut(s) 454
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 3 cut(s) 290, 298, 556
HpaII CCGG 3 cut(s) 181, 294, 497
HphI GGTGA 3 cut(s) 119, 169, 511
Hpy166II GTNNAC 6 cut(s) 64, 160, 217, 336, 394, 448
Hpy188I TCNGA 5 cut(s) 56, 289, 366, 512, 561
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 6 cut(s) 64, 160, 217, 336, 394, 448
HpyAV CCTTC 2 cut(s) 528, 692
HpyCH4III ACNGT 2 cut(s) 129, 609
HpyCH4IV ACGT 2 cut(s) 48, 195
HpyCH4V TGCA 6 cut(s) 193, 311, 401, 578, 594, 645
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 78, 83, 587
HpyF3I CTNAG 3 cut(s) 288, 365, 442
HpySE526I ACGT 2 cut(s) 48, 195
Hsp92II CATG 1 cut(s) 454
Kpn2I TCCGGA 1 cut(s) 180
Kzo9I GATC 4 cut(s) 37, 177, 371, 507
LmnI GCTCC 1 cut(s) 17
Lsp1109I GCAGC 2 cut(s) 413, 590
MaeI CTAG 1 cut(s) 353
MaeII ACGT 2 cut(s) 48, 195
MaeIII GTNAC 1 cut(s) 112
MalI GATC 4 cut(s) 39, 179, 373, 509
MboI GATC 4 cut(s) 37, 177, 371, 507
MboII GAAGA 1 cut(s) 196
MflI RGATCY 2 cut(s) 37, 177
MluCI AATT 5 cut(s) 57, 200, 320, 523, 690
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 5 cut(s) 132, 360, 451, 506, 622
Mph1103I ATGCAT 1 cut(s) 647
MroI TCCGGA 1 cut(s) 180
MseI TTAA 2 cut(s) 611, 653
MslI CAYNNNNRTG 1 cut(s) 389
MspI CCGG 3 cut(s) 181, 294, 497
MspR9I CCNGG 2 cut(s) 295, 497
MwoI GCNNNNNNNGC 4 cut(s) 17, 78, 83, 587
NciI CCSGG 2 cut(s) 295, 497
NdeI CATATG 1 cut(s) 146
NdeII GATC 4 cut(s) 37, 177, 371, 507
NlaIII CATG 1 cut(s) 454
NlaIV GGNNCC 2 cut(s) 179, 703
NmeAIII GCCGAG 1 cut(s) 440
NsiI ATGCAT 1 cut(s) 647
OliI CACNNNNGTG 1 cut(s) 389
PfeI GAWTC 2 cut(s) 298, 556
PflFI GACNNNGTC 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 293
PkrI GCNGC 3 cut(s) 13, 403, 580
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Ppu21I YACGTR 1 cut(s) 196
PpuMI RGGWCCY 2 cut(s) 619, 701
Psp5II RGGWCCY 2 cut(s) 619, 701
PspN4I GGNNCC 2 cut(s) 179, 703
PspPI GGNCC 2 cut(s) 619, 701
PspPPI RGGWCCY 2 cut(s) 619, 701
PsuI RGATCY 2 cut(s) 37, 177
PsyI GACNNNGTC 1 cut(s) 50
RsaI GTAC 3 cut(s) 198, 606, 670
RsaNI GTAC 3 cut(s) 197, 605, 669
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 2 cut(s) 611, 653
SatI GCNGC 3 cut(s) 12, 402, 579
Sau3AI GATC 4 cut(s) 37, 177, 371, 507
Sau96I GGNCC 2 cut(s) 619, 701
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 2 cut(s) 295, 497
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 2 cut(s) 619, 701
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 5 cut(s) 57, 200, 320, 523, 690
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 293, 495
TaaI ACNGT 2 cut(s) 129, 609
TaiI ACGT 2 cut(s) 51, 198
TaqI TCGA 2 cut(s) 301, 324
TasI AATT 5 cut(s) 57, 200, 320, 523, 690
TatI WGTACW 1 cut(s) 604
TfiI GAWTC 2 cut(s) 298, 556
Tru1I TTAA 2 cut(s) 611, 653
Tru9I TTAA 2 cut(s) 611, 653
TscAI CASTG 2 cut(s) 145, 450
TseI GCWGC 3 cut(s) 11, 401, 578
TspDTI ATGAA 2 cut(s) 240, 288
TspRI CASTG 2 cut(s) 145, 450
Tth111I GACNNNGTC 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 619, 701
XagI CCTNNNNNAGG 1 cut(s) 626
XapI RAATTY 2 cut(s) 320, 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XmiI GTMKAC 2 cut(s) 216, 335
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.