Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009712

Physical Location & Seq

Genomic Coordinates Reverse (-)

53879397 .. 53882469

Gene Structure 3073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGACGCTTTCGTGTTTGATGAATCGGAGAACAGCGGAGCTGGAGCTGGAGCTGGAGGGACTAAAACTAAAAAGGAGAAGAAGGCAAAGGGATGTTTAGTTGGAAGTGCAAGGAAGACGCTTGGTGATATAAGTAACATTCAGCAGCGGCCAAATAAGCAAGCTATCCAGCATGTGAACCAGCAATTTGATTCACTTACTACCAAGAAGTATGTTGAGAATCTAACCAAGGAAAATGTGGCACTGATGAAACTTCTTTCAGACAGAAATAAAGTCATTGAATTGAGCAGAACAGAGTTAGAGAACTTGAGAGCCCATCTTGAGAAAGTACAGCAACAGAATTCTCAACTTGCCCATGCAAACAGCCAGATGTTGGCGGAAGTCACTTCAAGTCGAGATAGGCTAAGGATACTTCAACATGCACTTGGATGCCAAAATGCCTTGCTCAAAGTGAGGAAAGTGGAGGAAAAGGAGAACGCCAAACAAGTAAGAAATCAAAATACGACAAATGAGAAGGTACGTTCAGCTCGGTGTGTTGAGCCAGGGGAATCCTCACAAGCTGTCAAGGAACATTTTAATACGAACAGGAAACGCCAACCACAAAATCTAGCATTAGGCCCTCCTATTGTTGAAGTTGTCCAAAACAACGAGAAGGCTGACAACAAAAGACGCTTGAGAAGGCAATCTGCAATCTTTGAAACCGAAGACCAGGAAACAACTGAAGACTCGTTTGAGATTAAAGATGACAATAAAAGATGGTTGAGAAGGCAATTGGCAAGTGCTAAAACTGAAGAACTACAAGCAAGTGAAGACTTGTCTGAGAGTAAAAATGAGAACAAAAGAAGTTTGAGAAGGCAATCTGCAAGGTTTAAAACTGAAGAGCCAGAAGTAACTGAAGAAACAAAAGTTACTGAGGACTTATCTGAGATCAATGATGATAATTTTCCTGTTTCTCTTTTGCATAATGATGGGGTTCATGAAAGTGATTCAACATGTCCATTAGTAAAAAAGGAGGATGGGGGAAGATCTGAAGAACAAGAATTTCAAAGATCATCTATAAGGCCACTGCGCCGAGCAGCTGAGAAGGTTAAGTCATACAAGGAAATTCCAATTAATGTGAAGATGCGCCAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034086 GO:0034090 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070013 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

378

Amino Acids

43.04

Weight (kDa)

8.95

Isoelectric Point (pI)

69.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	354 - 376	1.8e-08	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05360 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390 FvH4_7g18390
malus_domestica	MD01G1100300.v1.1 MD07G1167400.v1.1
prunus_persica	Prupe.2G206000_v2.0.a1 Prupe.2G206000_v2.0.a1
pyrus_communis	pycom01g12740 pycom07g16220
rosa_chinensis	RchiOBHm_Chr1g0362201
rosa_laevigata	RLG00000027667
rosa_multiflora	Rmu_sc0001237.1_g000004
rosa_roxburghii	Rroxscaffold_4G00294440
rosa_rugosa	Rorug01G0295400 Rorug01G0295500
rosa_samantha	Rh1AG305000 Rh1BG267800 Rh1CG286000 Rh1DG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	373
AciI	CCGC	3 cut(s)	36, 148, 377
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	3 cut(s)	340, 1040, 1104
AcuI	CTGAAG	5 cut(s)	741, 810, 897, 915, 1050
AfaI	GTAC	2 cut(s)	330, 519
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflIII	ACRYGT	1 cut(s)	992
AgsI	TTSAA	7 cut(s)	281, 390, 416, 632, 698, 990, 1046
AjnI	CCWGG	2 cut(s)	541, 708
AluBI	AGCT	7 cut(s)	41, 47, 53, 164, 527, 560, 1079
AluI	AGCT	7 cut(s)	41, 47, 53, 164, 527, 560, 1079
AoxI	GGCC	3 cut(s)	149, 616, 1061
ApeKI	GCWGC	2 cut(s)	145, 1076
ApoI	RAATTY	3 cut(s)	340, 1040, 1104
AseI	ATTAAT	1 cut(s)	1113
AspLEI	GCGC	2 cut(s)	1071, 1128
AspS9I	GGNCC	1 cut(s)	617
AsuHPI	GGTGA	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	316
BbsI	GAAGAC	4 cut(s)	122, 711, 729, 816
BbvI	GCAGC	2 cut(s)	157, 1088
BccI	CCATC	4 cut(s)	324, 750, 962, 1010
BciT130I	CCWGG	2 cut(s)	543, 710
BciVI	GTATCC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	608
BfuI	GTATCC	1 cut(s)	402
BglII	AGATCT	1 cut(s)	1025
BisI	GCNGC	3 cut(s)	146, 149, 1077
BlsI	GCNGC	3 cut(s)	147, 150, 1078
Bme1390I	CCNGG	2 cut(s)	543, 710
BmgT120I	GGNCC	1 cut(s)	617
BmrFI	CCNGG	2 cut(s)	543, 710
BmsI	GCATC	2 cut(s)	419, 1113
BpiI	GAAGAC	4 cut(s)	122, 711, 729, 816
BpmI	CTGGAG	3 cut(s)	63, 69, 75
Bpu10I	CCTNAGC	1 cut(s)	404
BpuEI	CTTGAG	3 cut(s)	328, 341, 694
BsaJI	CCNNGG	3 cut(s)	228, 542, 1129
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	543, 710
BseDI	CCNNGG	3 cut(s)	228, 542, 1129
BseGI	GGATG	3 cut(s)	98, 434, 1021
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	4 cut(s)	810, 903, 915, 1071
BseXI	GCAGC	2 cut(s)	157, 1088
BshFI	GGCC	3 cut(s)	151, 618, 1063
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	3 cut(s)	151, 618, 1063
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	927, 1025, 1049
BspACI	CCGC	3 cut(s)	36, 148, 377
BspANI	GGCC	3 cut(s)	151, 618, 1063
BspCNI	CTCAG	4 cut(s)	811, 904, 916, 1072
BspHI	TCATGA	1 cut(s)	976
BspQI	GCTCTTC	1 cut(s)	873
BssECI	CCNNGG	3 cut(s)	228, 542, 1129
BssMI	GATC	3 cut(s)	927, 1025, 1049
BssT1I	CCWWGG	2 cut(s)	228, 1129
Bst2UI	CCWGG	2 cut(s)	543, 710
Bst6I	CTCTTC	1 cut(s)	873
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	5 cut(s)	404, 819, 912, 924, 1080
BstF5I	GGATG	3 cut(s)	98, 434, 1021
BstHHI	GCGC	2 cut(s)	1071, 1128
BstKTI	GATC	3 cut(s)	930, 1028, 1052
BstMBI	GATC	3 cut(s)	927, 1025, 1049
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	2 cut(s)	543, 710
BstNSI	RCATGY	3 cut(s)	176, 422, 996
BstSCI	CCNGG	2 cut(s)	541, 708
BstV1I	GCAGC	2 cut(s)	157, 1088
BstV2I	GAAGAC	4 cut(s)	122, 711, 729, 816
BstX2I	RGATCY	1 cut(s)	1025
BstYI	RGATCY	1 cut(s)	1025
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	151, 618, 1063
BtsCI	GGATG	3 cut(s)	98, 434, 1021
BtsI	GCAGTG	1 cut(s)	1064
BtsIMutI	CAGTG	2 cut(s)	242, 1064
Cac8I	GCNNGC	1 cut(s)	162
CciI	TCATGA	1 cut(s)	976
CfoI	GCGC	2 cut(s)	1071, 1128
Cfr13I	GGNCC	1 cut(s)	617
CseI	GACGC	3 cut(s)	14, 127, 678
Csp6I	GTAC	2 cut(s)	329, 518
CviAII	CATG	5 cut(s)	173, 356, 419, 977, 993
CviQI	GTAC	2 cut(s)	329, 518
DdeI	CTNAG	5 cut(s)	404, 819, 912, 924, 1080
DpnI	GATC	3 cut(s)	929, 1027, 1051
DpnII	GATC	3 cut(s)	927, 1025, 1049
DraI	TTTAAA	1 cut(s)	871
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	873
EarI	CTCTTC	1 cut(s)	873
EciI	GGCGGA	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	228, 1129
Eco24I	GRGCYC	1 cut(s)	316
Eco57I	CTGAAG	5 cut(s)	741, 810, 897, 915, 1050
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	541, 708
EcoT14I	CCWWGG	2 cut(s)	228, 1129
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	2 cut(s)	228, 1129
FaeI	CATG	5 cut(s)	176, 359, 422, 980, 996
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	5 cut(s)	172, 355, 418, 976, 992
Fnu4HI	GCNGC	3 cut(s)	146, 149, 1077
FokI	GGATG	3 cut(s)	105, 441, 1028
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	3 cut(s)	146, 149, 1077
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	2 cut(s)	1070, 1127
GluI	GCNGC	3 cut(s)	146, 149, 1077
GsuI	CTGGAG	3 cut(s)	63, 69, 75
HaeIII	GGCC	3 cut(s)	151, 618, 1063
HgaI	GACGC	3 cut(s)	14, 127, 678
HhaI	GCGC	2 cut(s)	1071, 1128
Hin1II	CATG	5 cut(s)	176, 359, 422, 980, 996
Hin6I	GCGC	2 cut(s)	1069, 1126
HinP1I	GCGC	2 cut(s)	1069, 1126
HinfI	GANTC	6 cut(s)	23, 191, 220, 548, 725, 986
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	5 cut(s)	28, 262, 820, 925, 1030
Hpy188III	TCNNGA	3 cut(s)	320, 395, 977
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	7 cut(s)	76, 508, 646, 672, 759, 846, 1078
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	6 cut(s)	110, 359, 422, 689, 863, 961
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	5 cut(s)	404, 819, 912, 924, 1080
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	5 cut(s)	176, 359, 422, 980, 996
HspAI	GCGC	2 cut(s)	1069, 1126
Kzo9I	GATC	3 cut(s)	927, 1025, 1049
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	3 cut(s)	38, 44, 50
Lsp1109I	GCAGC	2 cut(s)	157, 1088
LweI	GCATC	2 cut(s)	419, 1113
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	4 cut(s)	134, 382, 889, 907
MalI	GATC	3 cut(s)	929, 1027, 1051
MboI	GATC	3 cut(s)	927, 1025, 1049
MfeI	CAATTG	1 cut(s)	770
MflI	RGATCY	1 cut(s)	1025
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	8 cut(s)	185, 281, 340, 770, 940, 1040, 1104, 1110
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	7 cut(s)	50, 447, 457, 562, 630, 907, 1006
MseI	TTAA	6 cut(s)	576, 738, 870, 1089, 1113, 1135
MslI	CAYNNNNRTG	3 cut(s)	427, 966, 981
MspA1I	CMGCKG	3 cut(s)	36, 148, 1079
MspR9I	CCNGG	2 cut(s)	543, 710
MunI	CAATTG	1 cut(s)	770
MvaI	CCWGG	2 cut(s)	543, 710
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	3 cut(s)	927, 1025, 1049
NlaIII	CATG	5 cut(s)	176, 359, 422, 980, 996
NmeAIII	GCCGAG	1 cut(s)	1097
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	3 cut(s)	176, 422, 996
PagI	TCATGA	1 cut(s)	976
PciI	ACATGT	1 cut(s)	992
PciSI	GCTCTTC	1 cut(s)	873
PfeI	GAWTC	5 cut(s)	23, 191, 220, 548, 986
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	147, 150, 1078
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
PscI	ACATGT	1 cut(s)	992
PshBI	ATTAAT	1 cut(s)	1113
Psp6I	CCWGG	2 cut(s)	541, 708
PspGI	CCWGG	2 cut(s)	541, 708
PspPI	GGNCC	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	1025
PvuII	CAGCTG	1 cut(s)	1079
RsaI	GTAC	2 cut(s)	330, 519
RsaNI	GTAC	2 cut(s)	329, 518
RseI	CAYNNNNRTG	3 cut(s)	427, 966, 981
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	6 cut(s)	576, 738, 870, 1089, 1113, 1135
SatI	GCNGC	3 cut(s)	146, 149, 1077
Sau3AI	GATC	3 cut(s)	927, 1025, 1049
Sau96I	GGNCC	1 cut(s)	617
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	2 cut(s)	543, 710
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	419, 1113
SmiMI	CAYNNNNRTG	3 cut(s)	427, 966, 981
SmlI	CTYRAG	3 cut(s)	307, 320, 673
SmoI	CTYRAG	3 cut(s)	307, 320, 673
Sse9I	AATT	8 cut(s)	185, 281, 340, 770, 940, 1040, 1104, 1110
SsiI	CCGC	3 cut(s)	36, 148, 377
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	2 cut(s)	541, 708
StyI	CCWWGG	2 cut(s)	228, 1129
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	1 cut(s)	394
TasI	AATT	8 cut(s)	185, 281, 340, 770, 940, 1040, 1104, 1110
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	5 cut(s)	23, 191, 220, 548, 986
Tru1I	TTAA	6 cut(s)	576, 738, 870, 1089, 1113, 1135
Tru9I	TTAA	6 cut(s)	576, 738, 870, 1089, 1113, 1135
TscAI	CASTG	2 cut(s)	249, 1071
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	2 cut(s)	145, 1076
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	4 cut(s)	36, 263, 965, 993
TspRI	CASTG	2 cut(s)	249, 1071
Van91I	CCANNNNNTGG	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	1113
XapI	RAATTY	3 cut(s)	340, 1040, 1104
XceI	RCATGY	3 cut(s)	176, 422, 996
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.