Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Forward (+)

55694943 .. 55696497

Gene Structure 1555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCAAAATTTATATCTTTTTATTTATGACTATGATTATGTATTTTCTAAGAATGGTCTTGTGGCTCACAAAGATGGGAAGCTCATTGGCACCCAGAGCTTGAAGTCACATCTTGGAGATGATAAGCTCAAGGAATTTATCAATTTTACACTTCACTATATTGCTGACTTGGACATACCGATAAAGAGGGGTACATTTATTGAGTTCCGAAGTGGGATGATTAATGTATCACCAATTGGGCGAAACTGGAGCCAAGAGGAAAGAGATGAATTTGAAAGATATGAGAAGTTCACAACGTATGCCCGAAAATGGTTTCTATCCTTCGTGAGAAGTTTGCTCACTTTAACACATTTTCCATGGGAGGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

123

Amino Acids

14.77

Weight (kDa)

6.91

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMM	PF03332	8 - 100	7.1e-42	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	7, 134, 269
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	103, 275
AluBI	AGCT	3 cut(s)	82, 99, 127
AluI	AGCT	3 cut(s)	82, 99, 127
ApoI	RAATTY	3 cut(s)	7, 134, 269
AseI	ATTAAT	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	89
BccI	CCATC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	91, 251
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	356
BspLI	GGNNCC	2 cut(s)	91, 251
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	1 cut(s)	357
CviJI	RGCY	5 cut(s)	65, 82, 99, 127, 252
CviKI_1	RGCY	5 cut(s)	65, 82, 99, 127, 252
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	1 cut(s)	360
FaiI	YATR	9 cut(s)	13, 27, 33, 39, 159, 176, 282, 300, 358
FatI	CATG	1 cut(s)	356
FokI	GGATG	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	268
Hin1II	CATG	1 cut(s)	360
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	2 cut(s)	107, 232
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	105
MfeI	CAATTG	1 cut(s)	234
MluCI	AATT	5 cut(s)	7, 134, 142, 234, 269
MnlI	CCTC	3 cut(s)	180, 250, 355
MseI	TTAA	2 cut(s)	222, 344
MslI	CAYNNNNRTG	1 cut(s)	72
MunI	CAATTG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	356
NlaIII	CATG	1 cut(s)	360
NlaIV	GGNNCC	2 cut(s)	91, 251
NmuCI	GTSAC	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	91, 251
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	222, 344
SetI	ASST	4 cut(s)	84, 101, 129, 299
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	5 cut(s)	7, 134, 142, 234, 269
StyI	CCWWGG	1 cut(s)	356
TaiI	ACGT	1 cut(s)	299
TasI	AATT	5 cut(s)	7, 134, 142, 234, 269
Tru1I	TTAA	2 cut(s)	222, 344
Tru9I	TTAA	2 cut(s)	222, 344
TseFI	GTSAC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	1 cut(s)	282
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	3 cut(s)	7, 134, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.