Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

55749995 .. 55753347

Gene Structure 3353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCAGCCCTTGTGCTCAAAATGACCACAGCAACCTCTCCTATAAAACCCCACCCCCAAAATCTCCTCCTCCCCAATTGGGTCCGCCCTCGTTCTCTCTCTCGCTCCTCCTTCACAACCACCCACCACCCAACAACCCTCCAGACCCAAACCCAAAATCAGAATCGCAAATACAAGTGGTGGAGGATAGCACCACCACTACCCTCACCCTCCTCGACTCCCCTGCTTGGGCCCAGATTCCGCGGCCCATATAAATGCCTGGCCATTTATCCCTCCTCTTCATCTGCTAGCGGCGGTCGCTCCGAGAATCAAGGAGAGGGTGGTCTTATGGCCGATATGGGTTCCCAGAATCATAAAGGCCATGAGTGGTTCGACGGCAAATTGTACGCTGATAAAGACGGATTGCTTTCCCCTAATCACGATGCCCAATCAACGCCGCCTCATCAATCCCCTAAATTGCTCACCTTGCCCACCATTCTCACCCTCGGCCGCGTCGCCGCCGTCCCCGTTCTCATCAGCACTTTCTATGTGGATAGTTGGTTGGGAAAAACTGCTACAACAAGTATATTCATAGCTGCAGCGATTACCGACTGGCTTGATGGCTATCTTGCTCGCAAGATGAGGTTAGGGTCGGCTTTTGGTGCATTTCTGGATCCAGTCGCTGATAAGCTCATGGTTGCTGCTACACTGGTTTTATTGTGCTCCAGACCTCAAGATGTTGCTGCATTTGGGCAAGTGCCATGGCTGTTGGTTGTTCCTTCAATTGCCATAATAGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACGCCAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGAAAGTGGAAAACAGCCACACAGATGATCGCACTAACTATCCTCTTGGCCACCCGAGATAGCAGTCTTGGAGGGCCAGAGTTTGTAGTAGCCTCTGGGGTTGTTCTGCTTTATATATCAGCAGGGCTTGCTGTATGGTCTTTAGCTGTGTATATGAGCAAGATATGGAAAGTACTGCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

348

Amino Acids

37.8

Weight (kDa)

9.9

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	155 - 333	8.9e-30	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	243, 492
AciI	CCGC	8 cut(s)	85, 241, 243, 291, 294, 437, 490, 498
AclWI	GGATC	2 cut(s)	647, 660
AcoI	YGGCCR	4 cut(s)	261, 330, 487, 909
AfaI	GTAC	2 cut(s)	386, 1035
AfiI	CCNNNNNNNGG	3 cut(s)	79, 227, 228
AgsI	TTSAA	1 cut(s)	762
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	4 cut(s)	575, 670, 832, 1007
AluI	AGCT	4 cut(s)	575, 670, 832, 1007
Alw21I	GWGCWC	2 cut(s)	18, 704
AlwI	GGATC	2 cut(s)	647, 660
AlwNI	CAGNNNCTG	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	915
AoxI	GGCC	8 cut(s)	230, 244, 261, 330, 358, 487, 909, 935
ApaI	GGGCCC	1 cut(s)	234
ApeKI	GCWGC	5 cut(s)	575, 578, 680, 722, 812
AspS9I	GGNCC	5 cut(s)	82, 230, 231, 245, 935
AsuHPI	GGTGA	3 cut(s)	198, 454, 472
AsuNHI	GCTAGC	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	915
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	234
BalI	TGGCCA	2 cut(s)	263, 911
BamHI	GGATCC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	18, 704
BbvCI	CCTCAGC	1 cut(s)	1040
BbvI	GCAGC	5 cut(s)	562, 590, 667, 709, 799
BccI	CCATC	1 cut(s)	593
BceAI	ACGGC	2 cut(s)	391, 485
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	260
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	576, 795
BmcAI	AGTACT	1 cut(s)	1035
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	915
BmgT120I	GGNCC	5 cut(s)	82, 230, 231, 245, 935
BmiI	GGNNCC	4 cut(s)	83, 232, 343, 654
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	412
BmtI	GCTAGC	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	125, 688
Bpu10I	CCTNAGC	1 cut(s)	1040
BpuEI	CTTGAG	1 cut(s)	696
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	3 cut(s)	241, 484, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 227, 228
Bse1I	ACTGG	3 cut(s)	596, 656, 693
Bse8I	GATNNNNATC	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	3 cut(s)	241, 484, 740
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	3 cut(s)	79, 227, 228
BseMII	CTCAG	2 cut(s)	833, 1031
BseNI	ACTGG	3 cut(s)	596, 656, 693
BseRI	GAGGAG	5 cut(s)	56, 59, 97, 202, 265
BseSI	GKGCMC	1 cut(s)	234
BseX3I	CGGCCG	1 cut(s)	487
BseXI	GCAGC	5 cut(s)	562, 590, 667, 709, 799
Bsh1236I	CGCG	2 cut(s)	243, 492
Bsh1285I	CGRYCG	2 cut(s)	298, 490
BshFI	GGCC	8 cut(s)	232, 246, 263, 332, 360, 489, 911, 937
BsiEI	CGRYCG	2 cut(s)	298, 490
BsiHKAI	GWGCWC	2 cut(s)	18, 704
BsiHKCI	CYCGRG	1 cut(s)	915
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	3 cut(s)	79, 227, 228
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	8 cut(s)	232, 246, 263, 332, 360, 489, 911, 937
BsoBI	CYCGRG	1 cut(s)	915
Bsp120I	GGGCCC	1 cut(s)	230
Bsp1286I	GDGCHC	3 cut(s)	18, 234, 704
Bsp143I	GATC	2 cut(s)	652, 888
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	8 cut(s)	85, 241, 243, 291, 294, 437, 490, 498
BspANI	GGCC	8 cut(s)	232, 246, 263, 332, 360, 489, 911, 937
BspCNI	CTCAG	2 cut(s)	832, 1032
BspFNI	CGCG	2 cut(s)	243, 492
BspLI	GGNNCC	4 cut(s)	83, 232, 343, 654
BspMAI	CTGCAG	2 cut(s)	580, 799
BspOI	GCTAGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	647, 660
BsrI	ACTGG	3 cut(s)	596, 656, 693
BssECI	CCNNGG	3 cut(s)	241, 484, 740
BssMI	GATC	2 cut(s)	652, 888
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstC8I	GCNNGC	3 cut(s)	289, 613, 990
BstDEI	CTNAG	2 cut(s)	819, 1040
BstDSI	CCRYGG	2 cut(s)	241, 740
BstFNI	CGCG	2 cut(s)	243, 492
BstKTI	GATC	2 cut(s)	655, 891
BstMBI	GATC	2 cut(s)	652, 888
BstMCI	CGRYCG	2 cut(s)	298, 490
BstMWI	GCNNNNNNNGC	4 cut(s)	297, 466, 641, 989
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	2 cut(s)	576, 795
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	2 cut(s)	243, 492
BstV1I	GCAGC	5 cut(s)	562, 590, 667, 709, 799
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BstZI	CGGCCG	1 cut(s)	487
BsuRI	GGCC	8 cut(s)	232, 246, 263, 332, 360, 489, 911, 937
BtgI	CCRYGG	2 cut(s)	241, 740
BtsIMutI	CAGTG	1 cut(s)	686
Cac8I	GCNNGC	3 cut(s)	289, 613, 990
CaiI	CAGNNNCTG	1 cut(s)	662
Cfr13I	GGNCC	5 cut(s)	82, 230, 231, 245, 935
Cfr42I	CCGCGG	1 cut(s)	244
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	385, 1034
CviAII	CATG	4 cut(s)	362, 673, 741, 790
CviQI	GTAC	2 cut(s)	385, 1034
DdeI	CTNAG	2 cut(s)	819, 1040
DpnI	GATC	2 cut(s)	654, 890
DpnII	GATC	2 cut(s)	652, 888
EaeI	YGGCCR	4 cut(s)	261, 330, 487, 909
EagI	CGGCCG	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	740
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	487
Eco88I	CYCGRG	1 cut(s)	915
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	740
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	4 cut(s)	365, 676, 744, 793
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	4 cut(s)	361, 672, 740, 789
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	288
GsuI	CTGGAG	2 cut(s)	125, 688
HaeIII	GGCC	8 cut(s)	232, 246, 263, 332, 360, 489, 911, 937
HgaI	GACGC	1 cut(s)	481
Hin1II	CATG	4 cut(s)	365, 676, 744, 793
HindIII	AAGCTT	1 cut(s)	830
HinfI	GANTC	5 cut(s)	163, 217, 237, 307, 349
HphI	GGTGA	3 cut(s)	198, 454, 472
Hpy188I	TCNGA	3 cut(s)	162, 304, 822
Hpy188III	TCNNGA	5 cut(s)	142, 419, 650, 705, 713
Hpy99I	CGWCG	2 cut(s)	377, 497
HpyAV	CCTTC	2 cut(s)	121, 768
HpyCH4V	TGCA	4 cut(s)	578, 644, 725, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	297, 466, 641, 989
HpyF3I	CTNAG	2 cut(s)	819, 1040
Hsp92II	CATG	4 cut(s)	365, 676, 744, 793
KspI	CCGCGG	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	652, 888
LmnI	GCTCC	3 cut(s)	110, 305, 707
Lsp1109I	GCAGC	5 cut(s)	562, 590, 667, 709, 799
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	288
MalI	GATC	2 cut(s)	654, 890
MboI	GATC	2 cut(s)	652, 888
MboII	GAAGA	1 cut(s)	270
MfeI	CAATTG	2 cut(s)	76, 762
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	3 cut(s)	18, 234, 704
MlsI	TGGCCA	2 cut(s)	263, 911
MluCI	AATT	4 cut(s)	76, 380, 455, 762
MluNI	TGGCCA	2 cut(s)	263, 911
MlyI	GAGTC	1 cut(s)	211
Mox20I	TGGCCA	2 cut(s)	263, 911
MscI	TGGCCA	2 cut(s)	263, 911
MslI	CAYNNNNRTG	2 cut(s)	253, 884
Msp20I	TGGCCA	2 cut(s)	263, 911
MspA1I	CMGCKG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	2 cut(s)	76, 762
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	2 cut(s)	243, 492
MwoI	GCNNNNNNNGC	4 cut(s)	297, 466, 641, 989
NcoI	CCATGG	1 cut(s)	740
NdeII	GATC	2 cut(s)	652, 888
NheI	GCTAGC	1 cut(s)	287
NlaIII	CATG	4 cut(s)	365, 676, 744, 793
NlaIV	GGNNCC	4 cut(s)	83, 232, 343, 654
NmeAIII	GCCGAG	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	163, 237, 307, 349
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	4 cut(s)	83, 232, 343, 654
PspOMI	GGGCCC	1 cut(s)	230
PspPI	GGNCC	5 cut(s)	82, 230, 231, 245, 935
PstI	CTGCAG	2 cut(s)	580, 799
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	2 cut(s)	386, 1035
RsaNI	GTAC	2 cut(s)	385, 1034
RseI	CAYNNNNRTG	2 cut(s)	253, 884
SacII	CCGCGG	1 cut(s)	244
Sau3AI	GATC	2 cut(s)	652, 888
Sau96I	GGNCC	5 cut(s)	82, 230, 231, 245, 935
ScaI	AGTACT	1 cut(s)	1035
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	3 cut(s)	18, 234, 704
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	2 cut(s)	576, 795
Sfr303I	CCGCGG	1 cut(s)	244
SgrBI	CCGCGG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	253, 884
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	4 cut(s)	76, 380, 455, 762
SsiI	CCGC	8 cut(s)	85, 241, 243, 291, 294, 437, 490, 498
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	740
TaqI	TCGA	2 cut(s)	215, 372
TasI	AATT	4 cut(s)	76, 380, 455, 762
TatI	WGTACW	1 cut(s)	1033
TauI	GCSGC	5 cut(s)	246, 294, 439, 492, 500
TfiI	GAWTC	4 cut(s)	163, 237, 307, 349
TscAI	CASTG	1 cut(s)	693
TseI	GCWGC	5 cut(s)	575, 578, 680, 722, 812
TspDTI	ATGAA	2 cut(s)	270, 559
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.