RchiOBHm_Chr1g0365851

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012338
Physical Location & Seq
Forward (+)
56649101 .. 56652599
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2076 bp
ATGGTTTTATCAAACCGAAAGCTGAAGCAACAGCTCAGGGAGAAGATAGCCGATTCTTTATTGACATTCGAAATCGTTAAGTCCGACCCGAGCAATGACGGGTCTGCAAACCCTGACCCGAATCCGCAGCAGCCCCAATCGCTGAGAGCGCTTCTGGGTTCGGCGAACCCGAAGCCCAGCTTGTCGAAGCGAGCGAAAAGGAGAAAGATCGCCGCTTTGAGAGGTCCGGCGGCGAGTGGCAGCGGCGGTAATTTTGAGGAAAATGAGGGGGATGAAATTAGGTCAGAGGAATTGGGGGTTGAGAAGGAAAAGAGTGGAGCTTTGGGTTCGGAGGGAAATGGGGATTTGAAGAAGGAAATTGGGTCGGAGAGTTTGGGGAAGAAGAAGAAGGAAAAGAGTGGAGATTTGGGTGCAGAGGGAAACGGGGATTTGGAGGAAGAGAAAAGTGAGATTGGGTCAGAGAGTTCGAGGAAGAAGAAGAGGAAGAGAGATGAGGAAGAAAAGAGTGGAGATTTGAGTTCAGAGGAAAATGGGGGTGTGAAGGAGGCTAAGAAACCAAAGAAGAAGAAGCCTAAGTGGAAGAAGAAGAAGGAGGCAAAGAGTGAGGAAGAGAAGGGTTTTGAGGTTGTGAGGGAAGACAAGAAGGGTTTTGAGGTTGTGAGGGAAGAGCAAAGTGTCAATGAGACTACTATGGAAACTGAAAGGCAAGCAAATGGGGAAGTTACAACAAAAGTTTACGTTGGAGGGATTCCTTATTACTCGACGGAGGATGATATTCGAAGTTACTTTGAAAGCTGTGGCTCCATTACTGAGATTGATTGTATGAAGTTTCCTGACAGTGGGAAGTTCAAAGGAATTGCCATTATTAGCTTTAGGACGGAAGCTGCTGCTAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGTGGACTGTTTCTGAAAATCCAGCCTTACAAAACAACTCGGGTCAATAAAGTAGTCAATAAAGTATCTGATTTTGCCCCAAAAATTGTGGAGGGCTACAATAGAATCTACGTTGGAAATTTGTCTTGGGATATCACTGAGGACGAACTGAGGAAACTTTTCTCAGATTGCAAGATATCGTCTATCAATTTTGGCATGGATAAGGAAACAGGAGAATTCCGAGGCTATGCCCATGTGGAATTTTCCGACAGTCTCTCACTGACAATGGCATTGAAGTTGGATCAGAAGATTGTTCTAGGGAGACCTGTCAAGATAAGCTGTGCAGTTCCTCTAAGAAAACCAGGGATCCATCCCAAGTCTGTATCCACAACTACAGGTACCCCTTCGGAGGCTGTAGCTACTACTGCAAGTGCAGGAGCTGATAATACCGGGTTGAGTGCCATCAGTGGTAAGCTTAAGAGAAGGACCTGCTATGAGTGTGGTGAAAAGGGCCATGTTTCTTCACTTTGTCCAATGAAGCAACCTGTGAATGTAGTAGATACTAATGCATCCTATACAGAGCCTGTAATGAGTACAAGTATGATTTTGGAGTCTGTAACAACAAGTACAGAAGCTGCTAATACTGATTTGAGCTCTGTCAGTGGTAAGATTAAGAGAAGGACATGCTATGAGTGTGGTGAAAAGGGCCATGTTTCTACAGCTTGTCCAAAGAAGCAATCTGCTGGTGCAATAATAGATACCAATGCCACCCCTACGACGCCTGTACATACAATTACAAGTCCTGTATGGGAGTCCGTAGCTATAACTCCAAGTACAGGAGTTGATAATACTGGGTTGAGTTCCATCAGCGGTAAGATTAAGAGAAGAACATGTTACGAATGTGGGGAAAAAGGTCATGTTTCTACAGCTTGTCCAAACAAACAATATGCTCTGCCAATAGAAACCACTGCAAGTCATATGAAGCCTGTACCTACAACGCCAACACCCCTTCTGGAGTCTGCAGCTACAACTACAAGTACAGAACCCGATAATGCTGGGTTGAGCTCCATTAGCGGTAAGATTAAGAGAAGGACGTGCTATGAGTGTGGTGAAAAGGGCCATATATCTTCAGCTTGTCCAAAGAAACAATCTGTCGATAACAATGCAAGCTGA

Protein Analysis

691

Amino Acids

74.6

Weight (kDa)

8.72

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 245 - 312 4.5e-13 RNA recognition motif
RRM_1 PF00076 344 - 411 1.5e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55340
fragaria_vesca FvH4_7g21531
malus_domestica MD01G1122100.v1.1 MD07G1191600.v1.1
prunus_persica Prupe.2G229600_v2.0.a1 Prupe.2G229700_v2.0.a1
pyrus_communis pycom01g14890 pycom07g18100
rosa_chinensis RchiOBHm_Chr1g0365851
rosa_laevigata RLG00000027386
rosa_multiflora Rmu_sc0023137.1_g000001 Rmu_sc0041703.1_g000001
rosa_roxburghii Rroxscaffold_4G00290800
rosa_rugosa Rorug01G0325000
rosa_samantha Rh1AG334000 Rh1BG294600 Rh1CG311300 Rh1DG327000
rosa_wichuraiana Rw1G029630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1400
Acc65I GGTACC 1 cut(s) 1301
AccB1I GGYRCC 1 cut(s) 1301
AciI CCGC 7 cut(s) 125, 213, 230, 243, 246, 1773, 1977
AclWI GGATC 3 cut(s) 1212, 1264, 1277
AcsI RAATTY 3 cut(s) 1042, 1139, 1163
AcuI CTGAAG 2 cut(s) 44, 2016
AcyI GRCGYC 1 cut(s) 1682
AfaI GTAC 7 cut(s) 1303, 1498, 1531, 1689, 1738, 1893, 1942
AfeI AGCGCT 1 cut(s) 150
AfiI CCNNNNNNNGG 3 cut(s) 839, 1312, 1739
AflII CTTAAG 1 cut(s) 1379
AflIII ACRYGT 1 cut(s) 1793
AgsI TTSAA 4 cut(s) 349, 791, 850, 1198
AjiI CACGTC 1 cut(s) 1998
AjnI CCWGG 1 cut(s) 1264
AjuI GAANNNNNNNTTGG 2 cut(s) 1033, 1065
Alw21I GWGCWC 2 cut(s) 1559, 1970
Alw26I GTCTC 3 cut(s) 677, 1181, 1219
AlwI GGATC 3 cut(s) 1212, 1264, 1277
AlwNI CAGNNNCTG 3 cut(s) 1343, 1487, 1538
Ama87I CYCGRG 2 cut(s) 88, 963
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 3 cut(s) 1414, 1609, 2020
ApeKI GCWGC 7 cut(s) 127, 130, 240, 884, 887, 1538, 1925
ApoI RAATTY 3 cut(s) 1042, 1139, 1163
Asp700I GAANNNNTTC 1 cut(s) 1082
Asp718I GGTACC 1 cut(s) 1301
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 5 cut(s) 224, 1389, 1414, 1609, 2020
AsuC2I CCSGG 1 cut(s) 1354
AsuHPI GGTGA 3 cut(s) 1418, 1613, 2024
AsuII TTCGAA 2 cut(s) 69, 778
AvaI CYCGRG 2 cut(s) 88, 963
AvaII GGWCC 2 cut(s) 224, 1389
BamHI GGATCC 1 cut(s) 1269
BanI GGYRCC 1 cut(s) 1301
BanII GRGCYC 2 cut(s) 1559, 1970
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 2 cut(s) 1559, 1970
BbvI GCAGC 7 cut(s) 139, 142, 252, 871, 874, 1525, 1937
BccI CCATC 4 cut(s) 905, 1281, 1373, 1775
BcgI CGANNNNNNTGC 1 cut(s) 2048
BciT130I CCWGG 1 cut(s) 1266
BciVI GTATCC 1 cut(s) 1297
BcnI CCSGG 1 cut(s) 1354
BcoDI GTCTC 3 cut(s) 677, 1181, 1219
BfaI CTAG 1 cut(s) 1220
BfmI CTRYAG 5 cut(s) 1296, 1317, 1620, 1827, 1923
BfoI RGCGCY 1 cut(s) 152
BfrI CTTAAG 1 cut(s) 1379
BfuAI ACCTGC 1 cut(s) 1400
BfuI GTATCC 1 cut(s) 1297
Bme1390I CCNGG 2 cut(s) 1266, 1354
Bme18I GGWCC 2 cut(s) 224, 1389
BmeT110I CYCGRG 2 cut(s) 88, 963
BmgBI CACGTC 1 cut(s) 1998
BmgT120I GGNCC 5 cut(s) 224, 1389, 1414, 1609, 2020
BmiI GGNNCC 3 cut(s) 802, 1271, 1303
BmrFI CCNGG 2 cut(s) 1266, 1354
BmrI ACTGGG 1 cut(s) 1764
BmsI GCATC 1 cut(s) 1481
BmuI ACTGGG 1 cut(s) 1764
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 1937
Bpu10I CCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 2 cut(s) 69, 778
BpuMI CCSGG 1 cut(s) 1354
BsaHI GRCGYC 1 cut(s) 1682
BsaI GGTCTC 1 cut(s) 1219
BsaJI CCNNGG 2 cut(s) 1144, 1265
Bsc4I CCNNNNNNNGG 3 cut(s) 839, 1312, 1739
Bse1I ACTGG 1 cut(s) 1759
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 1266
BseDI CCNNGG 2 cut(s) 1144, 1265
BseGI GGATG 4 cut(s) 277, 775, 1273, 1472
BseLI CCNNNNNNNGG 3 cut(s) 839, 1312, 1739
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 6 cut(s) 49, 134, 801, 1053, 1064, 1101
BseNI ACTGG 1 cut(s) 1759
BseXI GCAGC 7 cut(s) 139, 142, 252, 871, 874, 1525, 1937
BseYI CCCAGC 2 cut(s) 176, 1958
BsgI GTGCAG 3 cut(s) 432, 1266, 1356
BshFI GGCC 3 cut(s) 1416, 1611, 2022
BshNI GGYRCC 1 cut(s) 1301
BsiHKAI GWGCWC 2 cut(s) 1559, 1970
BsiHKCI CYCGRG 2 cut(s) 88, 963
BsiSI CCGG 2 cut(s) 227, 1353
BslI CCNNNNNNNGG 3 cut(s) 839, 1312, 1739
BsmAI GTCTC 3 cut(s) 677, 1181, 1219
BsnI GGCC 3 cut(s) 1416, 1611, 2022
Bso31I GGTCTC 1 cut(s) 1219
BsoBI CYCGRG 2 cut(s) 88, 963
Bsp119I TTCGAA 2 cut(s) 69, 778
Bsp1286I GDGCHC 2 cut(s) 1559, 1970
Bsp1407I TGTACA 1 cut(s) 1687
Bsp143I GATC 3 cut(s) 207, 1204, 1269
BspACI CCGC 7 cut(s) 125, 213, 230, 243, 246, 1773, 1977
BspANI GGCC 3 cut(s) 1416, 1611, 2022
BspCNI CTCAG 6 cut(s) 48, 135, 802, 1054, 1065, 1100
BspLI GGNNCC 3 cut(s) 802, 1271, 1303
BspMAI CTGCAG 1 cut(s) 1927
BspMI ACCTGC 1 cut(s) 1400
BspPI GGATC 3 cut(s) 1212, 1264, 1277
BspQI GCTCTTC 1 cut(s) 660
BspT104I TTCGAA 2 cut(s) 69, 778
BspT107I GGYRCC 1 cut(s) 1301
BspTI CTTAAG 1 cut(s) 1379
BspTNI GGTCTC 1 cut(s) 1219
BsrDI GCAATG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 1687
BsrI ACTGG 1 cut(s) 1759
BssECI CCNNGG 2 cut(s) 1144, 1265
BssMI GATC 3 cut(s) 207, 1204, 1269
BssNI GRCGYC 1 cut(s) 1682
Bst2UI CCWGG 1 cut(s) 1266
Bst4CI ACNGT 3 cut(s) 839, 933, 1175
Bst6I CTCTTC 5 cut(s) 432, 473, 479, 603, 660
BstACI GRCGYC 1 cut(s) 1682
BstAFI CTTAAG 1 cut(s) 1379
BstAUI TGTACA 1 cut(s) 1687
BstBI TTCGAA 2 cut(s) 69, 778
BstC8I GCNNGC 3 cut(s) 192, 708, 2071
BstDEI CTNAG 9 cut(s) 35, 143, 549, 573, 810, 1062, 1073, 1087, 1256
BstF5I GGATG 4 cut(s) 277, 775, 1273, 1472
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 3 cut(s) 210, 1207, 1272
BstMAI GTCTC 3 cut(s) 677, 1181, 1219
BstMBI GATC 3 cut(s) 207, 1204, 1269
BstMWI GCNNNNNNNGC 5 cut(s) 139, 148, 896, 1328, 1974
BstNI CCWGG 1 cut(s) 1266
BstNSI RCATGY 2 cut(s) 1590, 1797
BstSCI CCNGG 2 cut(s) 1264, 1352
BstSFI CTRYAG 5 cut(s) 1296, 1317, 1620, 1827, 1923
BstV1I GCAGC 7 cut(s) 139, 142, 252, 871, 874, 1525, 1937
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 1 cut(s) 1269
BstYI RGATCY 1 cut(s) 1269
BsuI GTATCC 1 cut(s) 1297
BsuRI GGCC 3 cut(s) 1416, 1611, 2022
BtrI CACGTC 1 cut(s) 1998
BtsCI GGATG 4 cut(s) 277, 775, 1273, 1472
BtsI GCAGTG 1 cut(s) 1869
BtsIMutI CAGTG 6 cut(s) 844, 1059, 1181, 1375, 1570, 1869
BveI ACCTGC 1 cut(s) 1400
Cac8I GCNNGC 3 cut(s) 192, 708, 2071
CaiI CAGNNNCTG 3 cut(s) 1343, 1487, 1538
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 5 cut(s) 224, 1389, 1414, 1609, 2020
CseI GACGC 1 cut(s) 1690
Csp6I GTAC 7 cut(s) 1302, 1497, 1530, 1688, 1737, 1892, 1941
CspCI CAANNNNNGTGG 2 cut(s) 993, 1028
CviAII CATG 8 cut(s) 922, 1120, 1157, 1418, 1587, 1613, 1794, 1820
CviQI GTAC 7 cut(s) 1302, 1497, 1530, 1688, 1737, 1892, 1941
DdeI CTNAG 9 cut(s) 35, 143, 549, 573, 810, 1062, 1073, 1087, 1256
DpnI GATC 3 cut(s) 209, 1206, 1271
DpnII GATC 3 cut(s) 207, 1204, 1269
Eam1104I CTCTTC 5 cut(s) 432, 473, 479, 603, 660
EarI CTCTTC 5 cut(s) 432, 473, 479, 603, 660
Ecl136II GAGCTC 2 cut(s) 1557, 1968
Eco24I GRGCYC 2 cut(s) 1559, 1970
Eco31I GGTCTC 1 cut(s) 1219
Eco32I GATATC 2 cut(s) 1057, 1101
Eco47I GGWCC 2 cut(s) 224, 1389
Eco47III AGCGCT 1 cut(s) 150
Eco53kI GAGCTC 2 cut(s) 1557, 1968
Eco57I CTGAAG 2 cut(s) 44, 2016
Eco88I CYCGRG 2 cut(s) 88, 963
EcoICRI GAGCTC 2 cut(s) 1557, 1968
EcoO109I RGGNCCY 1 cut(s) 1389
EcoRI GAATTC 1 cut(s) 1139
EcoRII CCWGG 1 cut(s) 1264
EcoRV GATATC 2 cut(s) 1057, 1101
EcoT22I ATGCAT 1 cut(s) 1474
EcoT38I GRGCYC 2 cut(s) 1559, 1970
FaeI CATG 8 cut(s) 925, 1123, 1160, 1421, 1590, 1616, 1797, 1823
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 8 cut(s) 921, 1119, 1156, 1417, 1586, 1612, 1793, 1819
FauNDI CATATG 1 cut(s) 1881
FokI GGATG 4 cut(s) 284, 782, 1260, 1459
FriOI GRGCYC 2 cut(s) 1559, 1970
FspBI CTAG 1 cut(s) 1220
GlaI GCGC 1 cut(s) 150
GsaI CCCAGC 2 cut(s) 180, 1962
GsuI CTGGAG 1 cut(s) 1937
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 3 cut(s) 1416, 1611, 2022
HapII CCGG 2 cut(s) 227, 1353
HgaI GACGC 1 cut(s) 1690
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 1682
Hin1II CATG 8 cut(s) 925, 1123, 1160, 1421, 1590, 1616, 1797, 1823
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 1376
HinfI GANTC 7 cut(s) 53, 121, 748, 1029, 1514, 1715, 1919
HpaII CCGG 2 cut(s) 227, 1353
HphI GGTGA 3 cut(s) 1418, 1613, 2024
Hpy166II GTNNAC 2 cut(s) 736, 929
Hpy188III TCNNGA 4 cut(s) 833, 908, 1234, 1916
Hpy8I GTNNAC 2 cut(s) 736, 929
Hpy99I CGWCG 2 cut(s) 766, 1684
HpyCH4III ACNGT 3 cut(s) 839, 933, 1175
HpyCH4IV ACGT 3 cut(s) 738, 1035, 1997
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 148, 896, 1328, 1974
HpyF3I CTNAG 9 cut(s) 35, 143, 549, 573, 810, 1062, 1073, 1087, 1256
HpySE526I ACGT 3 cut(s) 738, 1035, 1997
Hsp92I GRCGYC 1 cut(s) 1682
Hsp92II CATG 8 cut(s) 925, 1123, 1160, 1421, 1590, 1616, 1797, 1823
HspAI GCGC 1 cut(s) 149
KpnI GGTACC 1 cut(s) 1305
Kzo9I GATC 3 cut(s) 207, 1204, 1269
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 5 cut(s) 317, 806, 914, 1340, 1973
Lsp1109I GCAGC 7 cut(s) 139, 142, 252, 871, 874, 1525, 1937
LweI GCATC 1 cut(s) 1481
MaeI CTAG 1 cut(s) 1220
MaeII ACGT 3 cut(s) 738, 1035, 1997
MaeIII GTNAC 4 cut(s) 721, 782, 1519, 1796
MalI GATC 3 cut(s) 209, 1206, 1271
MboI GATC 3 cut(s) 207, 1204, 1269
MflI RGATCY 1 cut(s) 1269
MhlI GDGCHC 2 cut(s) 1559, 1970
MlyI GAGTC 3 cut(s) 1523, 1724, 1928
MmeI TCCRAC 6 cut(s) 108, 345, 721, 1018, 1182, 1194
Mph1103I ATGCAT 1 cut(s) 1474
MroXI GAANNNNTTC 1 cut(s) 1082
MseI TTAA 5 cut(s) 78, 1380, 1575, 1782, 1986
MspA1I CMGCKG 2 cut(s) 243, 1773
MspCI CTTAAG 1 cut(s) 1379
MspI CCGG 2 cut(s) 227, 1353
MspR9I CCNGG 2 cut(s) 1266, 1354
MvaI CCWGG 1 cut(s) 1266
MwoI GCNNNNNNNGC 5 cut(s) 139, 148, 896, 1328, 1974
NciI CCSGG 1 cut(s) 1354
NdeI CATATG 1 cut(s) 1881
NdeII GATC 3 cut(s) 207, 1204, 1269
NlaIII CATG 8 cut(s) 925, 1123, 1160, 1421, 1590, 1616, 1797, 1823
NlaIV GGNNCC 3 cut(s) 802, 1271, 1303
NsiI ATGCAT 1 cut(s) 1474
NspI RCATGY 2 cut(s) 1590, 1797
NspV TTCGAA 2 cut(s) 69, 778
PciI ACATGT 1 cut(s) 1793
PciSI GCTCTTC 1 cut(s) 660
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 167, 191
PdmI GAANNNNTTC 1 cut(s) 1082
PfeI GAWTC 4 cut(s) 53, 121, 748, 1029
PleI GAGTC 3 cut(s) 1522, 1723, 1927
PpsI GAGTC 3 cut(s) 1522, 1723, 1927
PpuMI RGGWCCY 1 cut(s) 1389
PscI ACATGT 1 cut(s) 1793
Psp124BI GAGCTC 2 cut(s) 1559, 1970
Psp5II RGGWCCY 1 cut(s) 1389
Psp6I CCWGG 1 cut(s) 1264
PspFI CCCAGC 2 cut(s) 176, 1958
PspGI CCWGG 1 cut(s) 1264
PspN4I GGNNCC 3 cut(s) 802, 1271, 1303
PspPI GGNCC 5 cut(s) 224, 1389, 1414, 1609, 2020
PspPPI RGGWCCY 1 cut(s) 1389
PstI CTGCAG 1 cut(s) 1927
PstNI CAGNNNCTG 3 cut(s) 1343, 1487, 1538
PsuI RGATCY 1 cut(s) 1269
RsaI GTAC 7 cut(s) 1303, 1498, 1531, 1689, 1738, 1893, 1942
RsaNI GTAC 7 cut(s) 1302, 1497, 1530, 1688, 1737, 1892, 1941
SacI GAGCTC 2 cut(s) 1559, 1970
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 5 cut(s) 78, 1380, 1575, 1782, 1986
Sau3AI GATC 3 cut(s) 207, 1204, 1269
Sau96I GGNCC 5 cut(s) 224, 1389, 1414, 1609, 2020
SchI GAGTC 3 cut(s) 1523, 1724, 1928
ScrFI CCNGG 2 cut(s) 1266, 1354
SduI GDGCHC 2 cut(s) 1559, 1970
SfaNI GCATC 1 cut(s) 1481
SfcI CTRYAG 5 cut(s) 1296, 1317, 1620, 1827, 1923
SfuI TTCGAA 2 cut(s) 69, 778
SinI GGWCC 2 cut(s) 224, 1389
SmlI CTYRAG 1 cut(s) 1379
SmoI CTYRAG 1 cut(s) 1379
SsiI CCGC 7 cut(s) 125, 213, 230, 243, 246, 1773, 1977
SspMI CTAG 1 cut(s) 1220
SstI GAGCTC 2 cut(s) 1559, 1970
StyD4I CCNGG 2 cut(s) 1264, 1352
TaaI ACNGT 3 cut(s) 839, 933, 1175
TaiI ACGT 3 cut(s) 741, 1038, 2000
TaqI TCGA 6 cut(s) 69, 185, 467, 761, 778, 2058
TatI WGTACW 5 cut(s) 1496, 1529, 1687, 1736, 1940
TauI GCSGC 3 cut(s) 215, 233, 246
TfiI GAWTC 4 cut(s) 53, 121, 748, 1029
Tru1I TTAA 5 cut(s) 78, 1380, 1575, 1782, 1986
Tru9I TTAA 5 cut(s) 78, 1380, 1575, 1782, 1986
TscAI CASTG 6 cut(s) 844, 1066, 1188, 1375, 1570, 1876
TseI GCWGC 7 cut(s) 127, 130, 240, 884, 887, 1538, 1925
TspDTI ATGAA 4 cut(s) 288, 839, 1454, 1898
TspGWI ACGGA 3 cut(s) 779, 893, 1708
TspRI CASTG 6 cut(s) 844, 1066, 1188, 1375, 1570, 1876
Vha464I CTTAAG 1 cut(s) 1379
VpaK11BI GGWCC 2 cut(s) 224, 1389
XapI RAATTY 3 cut(s) 1042, 1139, 1163
XceI RCATGY 2 cut(s) 1590, 1797
XmnI GAANNNNTTC 1 cut(s) 1082
XspI CTAG 1 cut(s) 1220
Zsp2I ATGCAT 1 cut(s) 1474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.