Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001626

Physical Location & Seq

Genomic Coordinates Forward (+)

59617662 .. 59620616

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGGCTGCCAAAGGCAAAGGAACTGTGAAGAAGGACAAGAAAGAAGTATTGAAGCCTGTTGACGACAGGCAATTCTCTAAACCGAAATTTAACTTCATCTTGATTACTTTTTGGAGTGGAAGTTGGGGTGTGGGAAAGCGAAAGGCAGTGGCTGAGGTTAACAAGAGCAGCGGAAAATTGGCCAAGAACTCAAAATCGGCCAAAAAGGACCCTAACAAACCAAAGAAGCCTGCTAGTGCTTTTTTTGTTTTTCTTGAAGAGTTCAGAATAACTTACAAGCAAGAGCACCCGAATGTGAAAGCTGTGTCAGCTGTGGGGAAAGCTGGCGGAGCAAAGTGGAAATCTATGTCTGCTGCAGAGAAAGCTCCATATGAAGCTAAAGCAGCTAAAAGGAAAACGGAGTATGAAAAACTTATGAATGCCTACAACACTAAACAGGAGGATACGGATGGTGATGATGATGAAGAACCTGAAAAACCAAAAGCCAGCGTGACCCATGAAGATGAGGAGAGTGGGGAGGAAGATGATGAAGATGACGATGATGAGGATGATGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

187

Amino Acids

20.9

Weight (kDa)

5.91

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	72 - 144	2.2e-12	HMG-box domain
HMG_box	PF00505	75 - 144	1.2e-20	HMG (high mobility group) box
HMG_WDHD1	PF24815	78 - 128	5.4e-10	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51880 AT3G51880 AT3G51880 AT3G51880 AT3G51880
fragaria_vesca	FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_7g24360 FvH4_7g24360 FvH4_7g24360
malus_domestica	MD01G1132900.v1.1 MD07G1220600.v1.1
prunus_persica	Prupe.2G249000_v2.0.a1 Prupe.2G249000_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1
pyrus_communis	pycom01g16950 pycom07g19960
rosa_chinensis	RchiOBHm_Chr1g0370021 RchiOBHm_Chr3g0463231
rosa_laevigata	RLG00000024799
rosa_multiflora	Rmu_co8427781.1_g000001 Rmu_sc0005056.1_g000014 Rmu_sc0008079.1_g000019 Rmu_sc0022743.1_g000005 Rmu_sc0022743.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286860 Rroxscaffold_4G00287170 Rroxscaffold_6G00416770
rosa_rugosa	Rorug01G0353500 Rorug03G0062700 Rorug03G0062700 Rorug03G0062700 Rorug03G0062800 Rorug03G0062800
rosa_samantha	Rh1AG362200 Rh1BG325400 Rh1CG338700 Rh1DG355900 Rh3AG120800 Rh3BG125300 Rh3CG127300 Rh3DG126500
rosa_wichuraiana	Rw1G031870 Rw3G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	174, 330
AcoI	YGGCCR	2 cut(s)	183, 201
AcsI	RAATTY	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	55, 260
AluBI	AGCT	6 cut(s)	305, 314, 326, 368, 380, 389
AluI	AGCT	6 cut(s)	305, 314, 326, 368, 380, 389
Alw21I	GWGCWC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	183, 201
ApeKI	GCWGC	4 cut(s)	8, 171, 356, 386
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	183, 343, 398
BccI	CCATC	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	439
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	439
BisI	GCNGC	4 cut(s)	9, 172, 357, 387
BlsI	GCNGC	4 cut(s)	10, 173, 358, 388
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
BseGI	GGATG	2 cut(s)	457, 556
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	3 cut(s)	183, 343, 398
BshFI	GGCC	2 cut(s)	185, 203
BsiHKAI	GWGCWC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	2 cut(s)	185, 203
Bsp1286I	GDGCHC	1 cut(s)	291
BspACI	CCGC	2 cut(s)	174, 330
BspANI	GGCC	2 cut(s)	185, 203
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	3 cut(s)	234, 328, 490
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	457, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 332, 365, 386
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	183, 343, 398
BsuI	GTATCC	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	185, 203
BtsCI	GGATG	2 cut(s)	457, 556
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	234, 328, 490
CaiI	CAGNNNCTG	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	211
CviAII	CATG	1 cut(s)	500
DdeI	CTNAG	1 cut(s)	156
EaeI	YGGCCR	2 cut(s)	183, 201
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	211
FaeI	CATG	1 cut(s)	503
FaiI	YATR	6 cut(s)	350, 373, 375, 408, 419, 501
FatI	CATG	1 cut(s)	499
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	4 cut(s)	9, 172, 357, 387
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	4 cut(s)	9, 172, 357, 387
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	4 cut(s)	9, 172, 357, 387
HaeIII	GGCC	2 cut(s)	185, 203
Hin1II	CATG	1 cut(s)	503
HincII	GTYRAC	2 cut(s)	64, 163
HindII	GTYRAC	2 cut(s)	64, 163
HpaI	GTTAAC	1 cut(s)	163
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	64, 163
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	2 cut(s)	103, 257
Hpy8I	GTNNAC	2 cut(s)	64, 163
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 332, 365, 386
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	503
KspAI	GTTAAC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	332, 373
LpnPI	CCDG	7 cut(s)	55, 72, 246, 312, 425, 486, 502
Lsp1109I	GCAGC	3 cut(s)	183, 343, 398
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	493
MboII	GAAGA	6 cut(s)	43, 272, 479, 515, 536, 545
MhlI	GDGCHC	1 cut(s)	291
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	3 cut(s)	74, 89, 179
MluNI	TGGCCA	1 cut(s)	185
MnlI	CCTC	5 cut(s)	151, 436, 502, 514, 541
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	2 cut(s)	93, 162
MslI	CAYNNNNRTG	2 cut(s)	294, 504
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	174, 314
Mva1269I	GAATGC	1 cut(s)	427
MwoI	GCNNNNNNNGC	4 cut(s)	311, 332, 365, 386
NdeI	CATATG	1 cut(s)	373
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	493
PctI	GAATGC	1 cut(s)	427
PkrI	GCNGC	4 cut(s)	10, 173, 358, 388
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	314
RseI	CAYNNNNRTG	2 cut(s)	294, 504
SaqAI	TTAA	2 cut(s)	93, 162
SatI	GCNGC	4 cut(s)	9, 172, 357, 387
Sau96I	GGNCC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	8 cut(s)	162, 307, 316, 328, 370, 382, 391, 475
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	2 cut(s)	294, 504
Sse9I	AATT	3 cut(s)	74, 89, 179
SsiI	CCGC	2 cut(s)	174, 330
SspMI	CTAG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	28
TasI	AATT	3 cut(s)	74, 89, 179
Tru1I	TTAA	2 cut(s)	93, 162
Tru9I	TTAA	2 cut(s)	93, 162
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	4 cut(s)	8, 171, 356, 386
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	8 cut(s)	17, 88, 390, 423, 434, 480, 516, 546
TspGWI	ACGGA	2 cut(s)	416, 464
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	89
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.