Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010613

Physical Location & Seq

Genomic Coordinates Reverse (-)

59963543 .. 59966173

Gene Structure 2631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 138 bp

ATGGCACAAACTATCTTTACAGAATACATTAAGGCAATTGAATTCGGCGAACTGAGTCTTGGAACTCTACCACCCATAATATATGGAGACCATCAAAAGACAAGTCGCAAGCCTCTACCTCTGGCCTTAAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001505 GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0006906 GO:0006996 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008289 GO:0009987 GO:0010638 GO:0010646 GO:0010647 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016079 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019905 GO:0023051 GO:0023052 GO:0023056 GO:0023061 GO:0030133 GO:0030276 GO:0031338 GO:0031340 GO:0031410 GO:0031982 GO:0032024 GO:0032879 GO:0032880 GO:0032940 GO:0033036 GO:0033043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045055 GO:0045921 GO:0045956 GO:0046872 GO:0046883 GO:0046887 GO:0046903 GO:0046907 GO:0048284 GO:0048489 GO:0048518 GO:0048522 GO:0048791 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070201 GO:0070382 GO:0071840 GO:0071944 GO:0090087 GO:0090174 GO:0090276 GO:0090277 GO:0097479 GO:0097480 GO:0097708 GO:0098916 GO:0099003 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:1903305 GO:1903307 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

45

Amino Acids

5.03

Weight (kDa)

8.12

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010613)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0370471 RchiOBHm_Chr2g0089841 RchiOBHm_Chr7g0237531 RchiOBHm_Chr7g0238251
rosa_laevigata	RLG00000029666
rosa_roxburghii	Rroxscaffold_3G00255990 Rroxscaffold_3G00261430 Rroxscaffold_3G00273570 Rroxscaffold_4G00295690 Rroxscaffold_5G00382900 Rroxscaffold_5G00383610 Rroxscaffold_6G00400840 Rroxscaffold_7G00164670 Rroxscaffold_7G00170930 Rroxscaffold_7G00202310
rosa_samantha	Rh1CG051900 Rh1DG056100 Rh1DG057200 Rh5BG136700 Rh6BG044600 Rh7AG461600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
Alw26I	GTCTC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
BccI	CCATC	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	110
CviJI	RGCY	2 cut(s)	112, 125
CviKI_1	RGCY	2 cut(s)	112, 125
DdeI	CTNAG	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	41
FaiI	YATR	3 cut(s)	77, 82, 84
HaeIII	GGCC	1 cut(s)	125
HinfI	GANTC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	53
LpnPI	CCDG	1 cut(s)	107
MfeI	CAATTG	1 cut(s)	36
MluCI	AATT	2 cut(s)	36, 41
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	2 cut(s)	123, 129
MseI	TTAA	2 cut(s)	30, 128
MunI	CAATTG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	30, 128
SchI	GAGTC	1 cut(s)	64
SetI	ASST	1 cut(s)	121
SgeI	CNNG	4 cut(s)	71, 114, 121, 134
Sse9I	AATT	2 cut(s)	36, 41
TasI	AATT	2 cut(s)	36, 41
Tru1I	TTAA	2 cut(s)	30, 128
Tru9I	TTAA	2 cut(s)	30, 128
XapI	RAATTY	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.