Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010613

Physical Location & Seq

Genomic Coordinates Forward (+)

8987479 .. 8989374

Gene Structure 1896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG056100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCACAAACTATCTTTACAGAATACATTAAGGCAATTGAATTCGGCGAACTGAGTCTTGGAACTCTACCACCCATAATATATGATTTTGGGATGAACATATTGGGAGGGGACATCTTGTCGATTCCAATCCTCTATCCATTTATTCAGGTGCTACACCGGAGACCATCAAAAGACAAGTCGCAAGCCTCTACCTCTGGCCTTAAAGACTTGATATCCCCTACCTTCAACCTTGAGAAAACAACTGAACTTTCTAGTCGTGAAAAGATGGGGATGACAAACAACGAGAAAGTATATATTTTGCAGTTCTTGGAGGTGATCCAAAACCCAAGCTATACAAGAGAGGCTGAGAGTCCCATAATCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001505 GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0006836 GO:0006887 GO:0006906 GO:0006996 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008289 GO:0008429 GO:0009898 GO:0009987 GO:0010638 GO:0010646 GO:0010647 GO:0010817 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016079 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019897 GO:0019898 GO:0019905 GO:0023051 GO:0023052 GO:0023056 GO:0023061 GO:0030133 GO:0030276 GO:0031210 GO:0031224 GO:0031226 GO:0031227 GO:0031234 GO:0031338 GO:0031340 GO:0031410 GO:0031982 GO:0031984 GO:0032024 GO:0032879 GO:0032880 GO:0032940 GO:0033036 GO:0033043 GO:0035091 GO:0042175 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045055 GO:0045921 GO:0045956 GO:0046872 GO:0046883 GO:0046887 GO:0046903 GO:0046907 GO:0048284 GO:0048489 GO:0048518 GO:0048522 GO:0048791 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050997 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070201 GO:0070382 GO:0070405 GO:0071840 GO:0071944 GO:0090087 GO:0090174 GO:0090276 GO:0090277 GO:0097479 GO:0097480 GO:0097708 GO:0098552 GO:0098562 GO:0098827 GO:0098916 GO:0099003 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:1903305 GO:1903307 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

122

Amino Acids

13.79

Weight (kDa)

5.11

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010613)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0370471 RchiOBHm_Chr2g0089841 RchiOBHm_Chr7g0237531 RchiOBHm_Chr7g0238251
rosa_laevigata	RLG00000029666
rosa_roxburghii	Rroxscaffold_3G00255990 Rroxscaffold_3G00261430 Rroxscaffold_3G00273570 Rroxscaffold_4G00295690 Rroxscaffold_5G00382900 Rroxscaffold_5G00383610 Rroxscaffold_6G00400840 Rroxscaffold_7G00164670 Rroxscaffold_7G00170930 Rroxscaffold_7G00202310
rosa_samantha	Rh1CG051900 Rh1DG056100 Rh1DG057200 Rh5BG136700 Rh6BG044600 Rh7AG461600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	41, 229
AhdI	GACNNNNNGTC	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	313
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsuHPI	GGTGA	1 cut(s)	328
BccI	CCATC	2 cut(s)	175, 262
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	255
BmeRI	GACNNNNNGTC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	128
BseGI	GGATG	2 cut(s)	99, 279
BseJI	GATNNNNATC	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	44, 339
BshFI	GGCC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	125, 339
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	125, 339
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	318
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	45, 340
BspPI	GGATC	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	157
BssMI	GATC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	53, 348
BstF5I	GGATG	2 cut(s)	99, 279
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	99, 279
Cac8I	GCNNGC	1 cut(s)	186
CviJI	RGCY	4 cut(s)	188, 201, 333, 347
CviKI_1	RGCY	4 cut(s)	188, 201, 333, 347
DdeI	CTNAG	2 cut(s)	53, 348
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DriI	GACNNNNNGTC	1 cut(s)	118
Eam1105I	GACNNNNNGTC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	216
FaiI	YATR	8 cut(s)	77, 82, 84, 101, 295, 297, 336, 359
FaqI	GGGAC	2 cut(s)	125, 339
FokI	GGATG	2 cut(s)	106, 286
FspBI	CTAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	160
HinfI	GANTC	3 cut(s)	55, 124, 352
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	304
HpyF3I	CTNAG	2 cut(s)	53, 348
Kzo9I	GATC	1 cut(s)	318
LpnPI	CCDG	3 cut(s)	134, 173, 183
MaeI	CTAG	1 cut(s)	255
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MfeI	CAATTG	1 cut(s)	36
MluCI	AATT	2 cut(s)	36, 41
MlyI	GAGTC	2 cut(s)	64, 361
MnlI	CCTC	6 cut(s)	101, 143, 199, 205, 307, 337
MseI	TTAA	2 cut(s)	30, 204
MspI	CCGG	1 cut(s)	160
MunI	CAATTG	1 cut(s)	36
NdeII	GATC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	124
PleI	GAGTC	2 cut(s)	63, 360
PpsI	GAGTC	2 cut(s)	63, 360
SaqAI	TTAA	2 cut(s)	30, 204
Sau3AI	GATC	1 cut(s)	318
SchI	GAGTC	2 cut(s)	64, 361
SetI	ASST	6 cut(s)	153, 197, 227, 234, 318, 335
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	36, 41
SspMI	CTAG	1 cut(s)	255
TaqI	TCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	36, 41
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	30, 204
Tru9I	TTAA	2 cut(s)	30, 204
TspDTI	ATGAA	1 cut(s)	110
XapI	RAATTY	1 cut(s)	41
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.