Rh1CG051900

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010613
Physical Location & Seq
Forward (+)
9528148 .. 9530596
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG051900.1

Sequence Viewer

Length: 366 bp
ATGAGAGCTTTGGGTATCAATGGTGTTTGGTATCATCTGCATCTCATACGGGACCCAGTAATCAAGCCACTACATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAACTCAAATTCCATTGTGGATAAAATGGCCCGATTGCGATCGAGTAGACTGGCTAAACAAGAGACCATCAAAAGACAAGTCGCAAGCCTCTACCTCTGGCCTTAAAGACTTGATATCCCCTACCTTCAACCTTGAGAAAACAACTGAACTTTCTAGTCGTGAAAAGGTCGAATATGGACCTTCAAGCACTTTGGGTCCGATCATTGTACTACATGGGCGAGCTGAGGTAGGCTTGTATGATCAGGCTTCATTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001505 GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0006906 GO:0006996 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008289 GO:0009987 GO:0010638 GO:0010646 GO:0010647 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016079 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019905 GO:0023051 GO:0023052 GO:0023056 GO:0023061 GO:0030133 GO:0030276 GO:0031338 GO:0031340 GO:0031410 GO:0031982 GO:0032024 GO:0032879 GO:0032880 GO:0032940 GO:0033036 GO:0033043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045055 GO:0045921 GO:0045956 GO:0046872 GO:0046883 GO:0046887 GO:0046903 GO:0046907 GO:0048284 GO:0048489 GO:0048518 GO:0048522 GO:0048791 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070201 GO:0070382 GO:0071840 GO:0071944 GO:0090087 GO:0090174 GO:0090276 GO:0090277 GO:0097479 GO:0097480 GO:0097708 GO:0098916 GO:0099003 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:1903305 GO:1903307 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

121

Amino Acids

13.74

Weight (kDa)

6.41

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 114
AfaI GTAC 1 cut(s) 315
AgsI TTSAA 2 cut(s) 235, 291
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 2 cut(s) 8, 329
AluI AGCT 2 cut(s) 8, 329
Alw26I GTCTC 1 cut(s) 163
AoxI GGCC 2 cut(s) 134, 205
ApoI RAATTY 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
Asp700I GAANNNNTTC 1 cut(s) 102
AspS9I GGNCC 4 cut(s) 52, 135, 284, 302
AvaII GGWCC 3 cut(s) 52, 284, 302
BbvCI CCTCAGC 1 cut(s) 330
BccI CCATC 1 cut(s) 181
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 261
Bme18I GGWCC 3 cut(s) 52, 284, 302
BmgT120I GGNCC 4 cut(s) 52, 135, 284, 302
BmiI GGNNCC 3 cut(s) 53, 54, 303
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 49
BmuI ACTGGG 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 163
Bse1I ACTGG 3 cut(s) 56, 84, 161
Bse8I GATNNNNATC 1 cut(s) 144
BseJI GATNNNNATC 1 cut(s) 144
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 3 cut(s) 56, 84, 161
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 136, 207
BsiEI CGRYCG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 2 cut(s) 136, 207
Bso31I GGTCTC 1 cut(s) 163
Bsp143I GATC 4 cut(s) 145, 306, 346, 360
BspANI GGCC 2 cut(s) 136, 207
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 3 cut(s) 53, 54, 303
BspTNI GGTCTC 1 cut(s) 163
BsrI ACTGG 3 cut(s) 56, 84, 161
BssMI GATC 4 cut(s) 145, 306, 346, 360
BstC8I GCNNGC 2 cut(s) 192, 327
BstDEI CTNAG 1 cut(s) 330
BstKTI GATC 4 cut(s) 148, 309, 349, 363
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 4 cut(s) 145, 306, 346, 360
BstMCI CGRYCG 1 cut(s) 148
BsuRI GGCC 2 cut(s) 136, 207
Cac8I GCNNGC 2 cut(s) 192, 327
Cfr13I GGNCC 4 cut(s) 52, 135, 284, 302
Csp6I GTAC 1 cut(s) 314
CviAII CATG 2 cut(s) 74, 320
CviJI RGCY 9 cut(s) 8, 67, 136, 160, 194, 207, 329, 339, 353
CviKI_1 RGCY 9 cut(s) 8, 67, 136, 160, 194, 207, 329, 339, 353
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 1 cut(s) 330
DpnI GATC 4 cut(s) 147, 308, 348, 362
DpnII GATC 4 cut(s) 145, 306, 346, 360
Eco31I GGTCTC 1 cut(s) 163
Eco32I GATATC 1 cut(s) 222
Eco47I GGWCC 3 cut(s) 52, 284, 302
EcoO109I RGGNCCY 1 cut(s) 52
EcoRV GATATC 1 cut(s) 222
FaeI CATG 2 cut(s) 77, 323
FaiI YATR 5 cut(s) 47, 75, 282, 321, 345
FaqI GGGAC 1 cut(s) 65
FatI CATG 2 cut(s) 73, 319
FbaI TGATCA 1 cut(s) 346
FblI GTMKAC 1 cut(s) 153
FspBI CTAG 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 2 cut(s) 136, 207
Hin1II CATG 2 cut(s) 77, 323
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 306, 365
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 241, 297
HpyCH4V TGCA 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 330
Hsp92II CATG 2 cut(s) 77, 323
KflI GGGWCCC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 4 cut(s) 145, 306, 346, 360
LpnPI CCDG 5 cut(s) 65, 69, 142, 189, 335
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 89
MalI GATC 4 cut(s) 147, 308, 348, 362
MboI GATC 4 cut(s) 145, 306, 346, 360
MboII GAAGA 1 cut(s) 110
MluCI AATT 1 cut(s) 114
MnlI CCTC 3 cut(s) 205, 211, 325
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 1 cut(s) 210
NdeII GATC 4 cut(s) 145, 306, 346, 360
NlaIII CATG 2 cut(s) 77, 323
NlaIV GGNNCC 3 cut(s) 53, 54, 303
PdmI GAANNNNTTC 1 cut(s) 102
Ple19I CGATCG 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 3 cut(s) 53, 54, 303
PspPI GGNCC 4 cut(s) 52, 135, 284, 302
PspPPI RGGWCCY 1 cut(s) 52
PvuI CGATCG 1 cut(s) 148
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 4 cut(s) 145, 306, 346, 360
Sau96I GGNCC 4 cut(s) 52, 135, 284, 302
SetI ASST 8 cut(s) 10, 203, 233, 240, 276, 289, 331, 336
SfaNI GCATC 1 cut(s) 49
SinI GGWCC 3 cut(s) 52, 284, 302
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 261
TaqI TCGA 2 cut(s) 148, 276
TasI AATT 1 cut(s) 114
TatI WGTACW 1 cut(s) 313
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TspDTI ATGAA 2 cut(s) 90, 345
VpaK11BI GGWCC 3 cut(s) 52, 284, 302
XapI RAATTY 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.