Rroxscaffold_4G00295690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010613
Physical Location & Seq
Reverse (-)
15727837 .. 15743348
15512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295690.1

Sequence Viewer

Length: 495 bp
ATGAGTGAGTGGTTTGGTTCGAGGGTTTTGCCGAATGGGTGCAGTGGAATTCGAGCGGCGCTTCGACTCGGAGTCGAATTTTACGGGGATGACAGCTTCAAGGACCCGTGGCGGCGTCTTCGTCCCGAGATTTCCAAGACTAGTGGGGGTGGTGGCTATGGCGGATTCGGTCGGATCATTTGTGGAGGAACCGCGTTAGGGTCCGAGCGGATGGTTGTGGCGGCGTGGCTATGGACCGTCGGGGCGGATCGTGGAGGCGGTGGTAGCTTGGTGGTTTCGGGGAGGGCGCGGCGGCTGAGCAGAGCATGGGATGCTCCGCAGTGTGGGACACTCCGACCCGAGCCCGGGAGGCTCCCTTATTTGTATGGGCGATGTACCGAGTTATTGCTCGACGAAGGAACTCAAACTAGCCATGCATGCAATCTGCTGCAACTGCATGCTAGTCTTCAAGCAAAGCTTCTAAATCAAATTACACTATTGGCATTACTAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.68

Weight (kDa)

9.19

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 56, 208
AccII CGCG 2 cut(s) 194, 289
AclWI GGATC 2 cut(s) 182, 255
AcsI RAATTY 2 cut(s) 48, 77
AcyI GRCGYC 1 cut(s) 115
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 4 cut(s) 198, 323, 344, 345
AgsI TTSAA 2 cut(s) 100, 449
AhdI GACNNNNNGTC 1 cut(s) 71
AhlI ACTAGT 1 cut(s) 140
AluBI AGCT 3 cut(s) 96, 267, 457
AluI AGCT 3 cut(s) 96, 267, 457
AlwI GGATC 2 cut(s) 182, 255
Ama87I CYCGRG 3 cut(s) 125, 338, 344
ApeKI GCWGC 1 cut(s) 427
ApoI RAATTY 2 cut(s) 48, 77
AspLEI GCGC 2 cut(s) 61, 289
AspS9I GGNCC 3 cut(s) 103, 201, 234
AsuC2I CCSGG 2 cut(s) 345, 346
AvaI CYCGRG 3 cut(s) 125, 338, 344
AvaII GGWCC 3 cut(s) 103, 201, 234
BanII GRGCYC 1 cut(s) 345
BbsI GAAGAC 2 cut(s) 110, 437
BbvI GCAGC 1 cut(s) 414
BccI CCATC 1 cut(s) 205
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcnI CCSGG 2 cut(s) 345, 346
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 5 cut(s) 141, 408, 441, 488, 493
BfoI RGCGCY 1 cut(s) 62
BglI GCCNNNNNGGC 1 cut(s) 349
BisI GCNGC 6 cut(s) 57, 113, 222, 290, 293, 428
BlpI GCTNAGC 1 cut(s) 296
BlsI GCNGC 6 cut(s) 58, 114, 223, 291, 294, 429
Bme1390I CCNGG 2 cut(s) 345, 346
Bme18I GGWCC 3 cut(s) 103, 201, 234
BmeRI GACNNNNNGTC 1 cut(s) 71
BmeT110I CYCGRG 3 cut(s) 125, 338, 344
BmgT120I GGNCC 3 cut(s) 103, 201, 234
BmiI GGNNCC 4 cut(s) 105, 190, 202, 353
BmrFI CCNGG 2 cut(s) 345, 346
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 2 cut(s) 110, 437
Bpu1102I GCTNAGC 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 345, 346
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 107, 344
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 323, 344, 345
BseDI CCNNGG 2 cut(s) 107, 344
BseGI GGATG 3 cut(s) 94, 216, 316
BseLI CCNNNNNNNGG 4 cut(s) 198, 323, 344, 345
BseMII CTCAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 414
BsgI GTGCAG 1 cut(s) 61
Bsh1236I CGCG 2 cut(s) 194, 289
Bsh1285I CGRYCG 1 cut(s) 172
BsiEI CGRYCG 1 cut(s) 172
BsiHKCI CYCGRG 3 cut(s) 125, 338, 344
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 2 cut(s) 108, 340
BslI CCNNNNNNNGG 4 cut(s) 198, 323, 344, 345
BsmFI GGGAC 2 cut(s) 108, 340
BsoBI CYCGRG 3 cut(s) 125, 338, 344
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 2 cut(s) 174, 247
Bsp1720I GCTNAGC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 288
BspFNI CGCG 2 cut(s) 194, 289
BspLI GGNNCC 4 cut(s) 105, 190, 202, 353
BspPI GGATC 2 cut(s) 182, 255
BsrBI CCGCTC 2 cut(s) 56, 208
BssECI CCNNGG 2 cut(s) 107, 344
BssMI GATC 2 cut(s) 174, 247
BssNI GRCGYC 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 238
BstACI GRCGYC 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 2 cut(s) 418, 438
BstDEI CTNAG 1 cut(s) 296
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 3 cut(s) 94, 216, 316
BstFNI CGCG 2 cut(s) 194, 289
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 2 cut(s) 61, 289
BstKTI GATC 2 cut(s) 177, 250
BstMBI GATC 2 cut(s) 174, 247
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 5 cut(s) 264, 311, 349, 417, 433
BstNSI RCATGY 2 cut(s) 420, 440
BstSCI CCNGG 2 cut(s) 343, 344
BstUI CGCG 2 cut(s) 194, 289
BstV1I GCAGC 1 cut(s) 414
BstV2I GAAGAC 2 cut(s) 110, 437
BtgI CCRYGG 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 385
BtsCI GGATG 3 cut(s) 94, 216, 316
BtsI GCAGTG 2 cut(s) 49, 326
BtsIMutI CAGTG 2 cut(s) 49, 326
Cac8I GCNNGC 2 cut(s) 418, 438
CfoI GCGC 2 cut(s) 61, 289
Cfr13I GGNCC 3 cut(s) 103, 201, 234
Cfr9I CCCGGG 1 cut(s) 344
CseI GACGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 375
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 4 cut(s) 306, 413, 417, 437
CviJI RGCY 9 cut(s) 96, 156, 229, 267, 295, 343, 352, 411, 457
CviKI_1 RGCY 9 cut(s) 96, 156, 229, 267, 295, 343, 352, 411, 457
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 1 cut(s) 296
DpnI GATC 2 cut(s) 176, 249
DpnII GATC 2 cut(s) 174, 247
DriI GACNNNNNGTC 1 cut(s) 71
Eam1105I GACNNNNNGTC 1 cut(s) 71
EciI GGCGGA 2 cut(s) 177, 260
Eco24I GRGCYC 1 cut(s) 345
Eco47I GGWCC 3 cut(s) 103, 201, 234
Eco88I CYCGRG 3 cut(s) 125, 338, 344
EcoO109I RGGNCCY 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 4 cut(s) 309, 416, 420, 440
FaiI YATR 7 cut(s) 159, 232, 307, 366, 414, 418, 438
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FaqI GGGAC 2 cut(s) 108, 340
FatI CATG 4 cut(s) 305, 412, 416, 436
Fnu4HI GCNGC 6 cut(s) 57, 113, 222, 290, 293, 428
FokI GGATG 3 cut(s) 101, 223, 323
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 6 cut(s) 57, 113, 222, 290, 293, 428
FspBI CTAG 5 cut(s) 141, 408, 441, 488, 493
GlaI GCGC 2 cut(s) 60, 288
GluI GCNGC 6 cut(s) 57, 113, 222, 290, 293, 428
HaeII RGCGCY 1 cut(s) 62
HapII CCGG 1 cut(s) 345
HgaI GACGC 1 cut(s) 104
HhaI GCGC 2 cut(s) 61, 289
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 4 cut(s) 309, 416, 420, 440
Hin6I GCGC 2 cut(s) 59, 287
HinP1I GCGC 2 cut(s) 59, 287
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 66, 72, 165
HpaII CCGG 1 cut(s) 345
Hpy188I TCNGA 4 cut(s) 71, 174, 205, 335
Hpy188III TCNNGA 1 cut(s) 125
Hpy99I CGWCG 2 cut(s) 242, 395
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 5 cut(s) 42, 416, 420, 430, 436
HpyF10VI GCNNNNNNNGC 5 cut(s) 264, 311, 349, 417, 433
HpyF3I CTNAG 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 4 cut(s) 309, 416, 420, 440
HspAI GCGC 2 cut(s) 59, 287
Kzo9I GATC 2 cut(s) 174, 247
LmnI GCTCC 2 cut(s) 319, 357
LpnPI CCDG 1 cut(s) 358
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 1 cut(s) 301
MaeI CTAG 5 cut(s) 141, 408, 441, 488, 493
MalI GATC 2 cut(s) 176, 249
MbiI CCGCTC 2 cut(s) 56, 208
MboI GATC 2 cut(s) 174, 247
MboII GAAGA 2 cut(s) 110, 437
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 3 cut(s) 48, 77, 468
MlyI GAGTC 2 cut(s) 60, 81
MmeI TCCRAC 2 cut(s) 152, 358
MnlI CCTC 5 cut(s) 15, 179, 248, 276, 342
Mph1103I ATGCAT 1 cut(s) 418
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 2 cut(s) 345, 346
MvnI CGCG 2 cut(s) 194, 289
MwoI GCNNNNNNNGC 5 cut(s) 264, 311, 349, 417, 433
NciI CCSGG 2 cut(s) 345, 346
NdeII GATC 2 cut(s) 174, 247
NlaIII CATG 4 cut(s) 309, 416, 420, 440
NlaIV GGNNCC 4 cut(s) 105, 190, 202, 353
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 2 cut(s) 420, 440
PaeI GCATGC 2 cut(s) 420, 440
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 6 cut(s) 58, 114, 223, 291, 294, 429
PleI GAGTC 2 cut(s) 60, 80
PpsI GAGTC 2 cut(s) 60, 80
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 4 cut(s) 105, 190, 202, 353
PspPI GGNCC 3 cut(s) 103, 201, 234
PspPPI RGGWCCY 1 cut(s) 103
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SatI GCNGC 6 cut(s) 57, 113, 222, 290, 293, 428
Sau3AI GATC 2 cut(s) 174, 247
Sau96I GGNCC 3 cut(s) 103, 201, 234
SchI GAGTC 2 cut(s) 60, 81
ScrFI CCNGG 2 cut(s) 345, 346
SduI GDGCHC 1 cut(s) 345
SetI ASST 3 cut(s) 98, 269, 459
SfaNI GCATC 1 cut(s) 301
SinI GGWCC 3 cut(s) 103, 201, 234
SmaI CCCGGG 1 cut(s) 346
SpeI ACTAGT 1 cut(s) 140
SphI GCATGC 2 cut(s) 420, 440
Sse9I AATT 3 cut(s) 48, 77, 468
SspMI CTAG 5 cut(s) 141, 408, 441, 488, 493
StyD4I CCNGG 2 cut(s) 343, 344
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 5 cut(s) 20, 52, 64, 75, 390
TaqII GACCGA 1 cut(s) 158
TasI AATT 3 cut(s) 48, 77, 468
TauI GCSGC 5 cut(s) 59, 115, 224, 292, 295
TfiI GAWTC 1 cut(s) 165
TscAI CASTG 2 cut(s) 49, 326
TseI GCWGC 1 cut(s) 427
TspMI CCCGGG 1 cut(s) 344
TspRI CASTG 2 cut(s) 49, 326
VpaK11BI GGWCC 3 cut(s) 103, 201, 234
XapI RAATTY 2 cut(s) 48, 77
XceI RCATGY 2 cut(s) 420, 440
XmaI CCCGGG 1 cut(s) 344
XspI CTAG 5 cut(s) 141, 408, 441, 488, 493
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.