Rroxscaffold_3G00255990
ERF Family

Belongs to the GST superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010613
Physical Location & Seq
Forward (+)
50433716 .. 50438653
4938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255990.1

Sequence Viewer

Length: 354 bp
ATGGAGATCCAAGCTTTGAATCCCAACCGCAACAACCACAATGACTACTGTATAATCGCGACGGCTGCAGATATAGAGCTCAACAAGCAATTTCGGAAGAAGCTGGTGTTTCAGATCCCGATTCGAGAGTCGGTATTCATTAAACGAATTTTGGCTGCTCCCTATGAGAAAGAGGTTGAATTCGAGCTTGTTCCGATAGACATGAGAGCTTGTGAACATAAGAGGGAGTCATGTGGGTATCAATGGTGTTTGGTATCATCTGCATCTCATACGGAAGAGAAAAGGGGAGCTGGGGTAGAAGCTCGAGAGCTTAAGAAAGATGATGAAGTGTGGCTGGTCGGTAAAGCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_N

Protein Analysis

117

Amino Acids

13.52

Weight (kDa)

6.31

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 59
AciI CCGC 2 cut(s) 28, 347
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 2 cut(s) 147, 179
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 19, 179
AluBI AGCT 8 cut(s) 14, 79, 103, 187, 209, 290, 302, 310
AluI AGCT 8 cut(s) 14, 79, 103, 187, 209, 290, 302, 310
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 65, 155
ApoI RAATTY 2 cut(s) 147, 179
AvaI CYCGRG 1 cut(s) 303
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 52, 142
BceAI ACGGC 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 311
BisI GCNGC 2 cut(s) 66, 156
BlsI GCNGC 2 cut(s) 67, 157
BmeT110I CYCGRG 1 cut(s) 303
BmsI GCATC 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
BseXI GCAGC 2 cut(s) 52, 142
BseYI CCCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 303
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 6, 114
Bsp68I TCGCGA 1 cut(s) 59
BspACI CCGC 2 cut(s) 28, 347
BspFNI CGCG 1 cut(s) 59
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 1 cut(s) 109
BspTI CTTAAG 1 cut(s) 311
BssMI GATC 2 cut(s) 6, 114
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 270
BstAFI CTTAAG 1 cut(s) 311
BstFNI CGCG 1 cut(s) 59
BstKTI GATC 2 cut(s) 9, 117
BstMBI GATC 2 cut(s) 6, 114
BstMWI GCNNNNNNNGC 2 cut(s) 65, 85
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 52, 142
BstX2I RGATCY 2 cut(s) 6, 114
BstYI RGATCY 2 cut(s) 6, 114
BtuMI TCGCGA 1 cut(s) 59
CviAII CATG 2 cut(s) 202, 231
DpnI GATC 2 cut(s) 8, 116
DpnII GATC 2 cut(s) 6, 114
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 2 cut(s) 205, 234
FaiI YATR 7 cut(s) 53, 74, 165, 203, 219, 232, 270
FatI CATG 2 cut(s) 201, 230
Fnu4HI GCNGC 2 cut(s) 66, 156
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 66, 156
GluI GCNGC 2 cut(s) 66, 156
GsaI CCCAGC 1 cut(s) 294
Hin1II CATG 2 cut(s) 205, 234
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 4 cut(s) 19, 121, 128, 227
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 96, 114, 195
Hpy188III TCNNGA 4 cut(s) 58, 118, 125, 305
Hpy8I GTNNAC 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 68, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 85
Hsp92II CATG 2 cut(s) 205, 234
Kzo9I GATC 2 cut(s) 6, 114
LmnI GCTCC 2 cut(s) 163, 287
LpnPI CCDG 3 cut(s) 89, 276, 320
Lsp1109I GCAGC 2 cut(s) 52, 142
LweI GCATC 1 cut(s) 272
MalI GATC 2 cut(s) 8, 116
MboI GATC 2 cut(s) 6, 114
MboII GAAGA 2 cut(s) 109, 287
MflI RGATCY 2 cut(s) 6, 114
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 3 cut(s) 89, 147, 179
MlyI GAGTC 2 cut(s) 137, 236
MnlI CCTC 2 cut(s) 166, 216
MseI TTAA 2 cut(s) 141, 312
MspCI CTTAAG 1 cut(s) 311
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 65, 85
NdeII GATC 2 cut(s) 6, 114
NlaIII CATG 2 cut(s) 205, 234
NruI TCGCGA 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 303
PfeI GAWTC 2 cut(s) 19, 121
PkrI GCNGC 2 cut(s) 67, 157
PleI GAGTC 2 cut(s) 136, 235
PpsI GAGTC 2 cut(s) 136, 235
Psp124BI GAGCTC 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 290
PstI CTGCAG 1 cut(s) 70
PsuI RGATCY 2 cut(s) 6, 114
RruI TCGCGA 1 cut(s) 59
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 2 cut(s) 141, 312
SatI GCNGC 2 cut(s) 66, 156
Sau3AI GATC 2 cut(s) 6, 114
SchI GAGTC 2 cut(s) 137, 236
SduI GDGCHC 1 cut(s) 81
SetI ASST 9 cut(s) 16, 81, 105, 177, 189, 211, 292, 304, 312
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 303
SlaI CTCGAG 1 cut(s) 303
SmlI CTYRAG 2 cut(s) 303, 311
SmoI CTYRAG 2 cut(s) 303, 311
Sse9I AATT 3 cut(s) 89, 147, 179
SsiI CCGC 2 cut(s) 28, 347
SstI GAGCTC 1 cut(s) 81
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 3 cut(s) 124, 183, 304
TasI AATT 3 cut(s) 89, 147, 179
TfiI GAWTC 2 cut(s) 19, 121
Tru1I TTAA 2 cut(s) 141, 312
Tru9I TTAA 2 cut(s) 141, 312
TseI GCWGC 2 cut(s) 65, 155
TspDTI ATGAA 2 cut(s) 127, 339
TspGWI ACGGA 1 cut(s) 287
Vha464I CTTAAG 1 cut(s) 311
XapI RAATTY 2 cut(s) 147, 179
XhoI CTCGAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.