Rh5BG136700

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010613
Physical Location & Seq
Forward (+)
13962548 .. 13966157
3610 bp
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UTR
Exon/CDS
Intron
Rh5BG136700.1

Sequence Viewer

Length: 327 bp
ATGAACATAAGAGGGAGTCATGTGCAAAGACCGAGTGTTGAATCTTGGATCCTGTGCTTTTTCTTGATATGTGCTGAAGTGGGTATCAATGGTGTTTGGTATCATCTGCATCTCATACGGGACCCAGTAATCAAGCCACTACATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAACTCAAATTCCATTGTGGATAAAATGGCCCGATTGCGATCGAGTTAGTATCACCATCCAATCCTTTTACATTGAACTTTTGCTCTTTCCTTCTCTAACCGCTGCTCGGAATATCGATCAGTACTCATTATACACTTCATGGTGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001505 GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0006906 GO:0006996 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008289 GO:0009987 GO:0010638 GO:0010646 GO:0010647 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016079 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019905 GO:0023051 GO:0023052 GO:0023056 GO:0023061 GO:0030133 GO:0030276 GO:0031338 GO:0031340 GO:0031410 GO:0031982 GO:0032024 GO:0032879 GO:0032880 GO:0032940 GO:0033036 GO:0033043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045055 GO:0045921 GO:0045956 GO:0046872 GO:0046883 GO:0046887 GO:0046903 GO:0046907 GO:0048284 GO:0048489 GO:0048518 GO:0048522 GO:0048791 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070201 GO:0070382 GO:0071840 GO:0071944 GO:0090087 GO:0090174 GO:0090276 GO:0090277 GO:0097479 GO:0097480 GO:0097708 GO:0098916 GO:0099003 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:1903305 GO:1903307 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

108

Amino Acids

12.73

Weight (kDa)

6.03

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 312
AciI CCGC 1 cut(s) 276
AclWI GGATC 2 cut(s) 43, 56
AcsI RAATTY 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 2 cut(s) 41, 251
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AlwI GGATC 2 cut(s) 43, 56
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 183
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 121, 204
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 121
BamHI GGATCC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 312
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 204
BmiI GGNNCC 3 cut(s) 50, 122, 123
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 125, 153
Bse8I GATNNNNATC 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 291
BseGI GGATG 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 282
BseNI ACTGG 2 cut(s) 125, 153
BseXI GCAGC 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 205
BshVI ATCGAT 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 1 cut(s) 205
Bsp143I GATC 3 cut(s) 48, 214, 292
BspACI CCGC 1 cut(s) 276
BspANI GGCC 1 cut(s) 205
BspDI ATCGAT 1 cut(s) 291
BspLI GGNNCC 3 cut(s) 50, 122, 123
BspMI ACCTGC 1 cut(s) 312
BspPI GGATC 2 cut(s) 43, 56
BsrI ACTGG 2 cut(s) 125, 153
BssMI GATC 3 cut(s) 48, 214, 292
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 3 cut(s) 51, 217, 295
BstMBI GATC 3 cut(s) 48, 214, 292
BstMCI CGRYCG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 1 cut(s) 205
BsuTUI ATCGAT 1 cut(s) 291
BtsCI GGATG 1 cut(s) 231
BveI ACCTGC 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 121, 204
ClaI ATCGAT 1 cut(s) 291
Csp6I GTAC 1 cut(s) 298
CviAII CATG 3 cut(s) 20, 143, 315
CviJI RGCY 2 cut(s) 136, 205
CviKI_1 RGCY 2 cut(s) 136, 205
CviQI GTAC 1 cut(s) 298
DpnI GATC 3 cut(s) 50, 216, 294
DpnII GATC 3 cut(s) 48, 214, 292
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 121
FaeI CATG 3 cut(s) 23, 146, 318
FaiI YATR 7 cut(s) 8, 21, 70, 116, 144, 307, 316
FaqI GGGAC 1 cut(s) 134
FatI CATG 3 cut(s) 19, 142, 314
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 1 cut(s) 205
Hin1II CATG 3 cut(s) 23, 146, 318
HinfI GANTC 2 cut(s) 16, 41
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 25, 109, 321
Hsp92II CATG 3 cut(s) 23, 146, 318
KflI GGGWCCC 1 cut(s) 121
Kzo9I GATC 3 cut(s) 48, 214, 292
LpnPI CCDG 4 cut(s) 65, 134, 138, 307
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 158
MalI GATC 3 cut(s) 50, 216, 294
MboI GATC 3 cut(s) 48, 214, 292
MboII GAAGA 1 cut(s) 179
MflI RGATCY 1 cut(s) 48
MluCI AATT 1 cut(s) 183
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 278
NdeII GATC 3 cut(s) 48, 214, 292
NlaIII CATG 3 cut(s) 23, 146, 318
NlaIV GGNNCC 3 cut(s) 50, 122, 123
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 280
Ple19I CGATCG 1 cut(s) 217
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 50, 122, 123
PspPI GGNCC 2 cut(s) 121, 204
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 48
PvuI CGATCG 1 cut(s) 217
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 3 cut(s) 48, 214, 292
Sau96I GGNCC 2 cut(s) 121, 204
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 1 cut(s) 25
SetI ASST 1 cut(s) 326
SfaNI GCATC 1 cut(s) 118
SinI GGWCC 1 cut(s) 121
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 276
TaqI TCGA 2 cut(s) 217, 291
TaqII GACCGA 1 cut(s) 46
TasI AATT 1 cut(s) 183
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 1 cut(s) 41
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 17, 159, 303
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 171
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.