Rroxscaffold_3G00261430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010613
Physical Location & Seq
Reverse (-)
55713587 .. 55723505
9919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261430.1

Sequence Viewer

Length: 432 bp
ATGAGAGCTTGTGAACATAAGAGGGAGTCATGTGGGTATCAATGGTGTTTGGTATCATCGCATCTCATACGGGTGTGGTACTTTCATATGTTATTGCCGATAGAAGAGAAAAGGGGAGCTGGGGTAGAAGCTCGAGAGCTTAAGAAAGATGATGAAGTGTGGCTGGTCGCACGCACCCGACCTCATCAACAGACGCCATCCTCTGTACAATACTCTGTTGTTTTTCGCGAAGGGAAGGAGTTGCCTCACCATGCTACGAAAGTTTGTGAAAGCTATCTTGGTCAGCTGCAACAGTACAGGTATGATTCAAGAAATCGTTGTACCATGCTTATTCCAGTCAAGGAGATGGTGCCGGCCATCTGCACTTCTGAGATCAGATCTGGGAGTAGGGACAATGATGGAGACACATTTACATGGAGATGGGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.89

Weight (kDa)

8.23

Isoelectric Point (pI)

60.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AccII CGCG 1 cut(s) 228
AcoI YGGCCR 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 4 cut(s) 80, 207, 296, 322
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 309
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 6 cut(s) 8, 119, 131, 139, 273, 286
AluI AGCT 6 cut(s) 8, 119, 131, 139, 273, 286
Alw26I GTCTC 1 cut(s) 396
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 273
BccI CCATC 5 cut(s) 205, 340, 365, 392, 414
BcoDI GTCTC 1 cut(s) 396
BfrI CTTAAG 1 cut(s) 140
BglII AGATCT 1 cut(s) 377
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 351
BmsI GCATC 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 335
BseXI GCAGC 1 cut(s) 273
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 356
BshNI GGYRCC 1 cut(s) 349
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 353
BslFI GGGAC 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 132
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 2 cut(s) 372, 377
Bsp68I TCGCGA 1 cut(s) 228
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 349
BspTI CTTAAG 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 205
BsrI ACTGG 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 352
BssMI GATC 2 cut(s) 372, 377
BssNI GRCGYC 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 194
BstAFI CTTAAG 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 172, 354
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 228
BstKTI GATC 2 cut(s) 375, 380
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 2 cut(s) 372, 377
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 1 cut(s) 356
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 1 cut(s) 197
BtuMI TCGCGA 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 172, 354
Cfr10I RCCGGY 1 cut(s) 352
CseI GACGC 1 cut(s) 202
Csp6I GTAC 4 cut(s) 79, 206, 295, 321
CviAII CATG 4 cut(s) 30, 251, 325, 414
CviJI RGCY 8 cut(s) 8, 119, 131, 139, 163, 273, 286, 356
CviKI_1 RGCY 8 cut(s) 8, 119, 131, 139, 163, 273, 286, 356
CviQI GTAC 4 cut(s) 79, 206, 295, 321
DdeI CTNAG 1 cut(s) 369
DpnI GATC 2 cut(s) 374, 379
DpnII GATC 2 cut(s) 372, 377
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 132
FaeI CATG 4 cut(s) 33, 254, 328, 417
FaiI YATR 9 cut(s) 18, 31, 68, 87, 89, 252, 303, 326, 415
FaqI GGGAC 1 cut(s) 404
FatI CATG 4 cut(s) 29, 250, 324, 413
FauNDI CATATG 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 287
GsaI CCCAGC 1 cut(s) 123
HaeIII GGCC 1 cut(s) 356
HapII CCGG 1 cut(s) 353
HgaI GACGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 4 cut(s) 33, 254, 328, 417
HinfI GANTC 2 cut(s) 26, 305
HpaII CCGG 1 cut(s) 353
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 370, 377
Hpy188III TCNNGA 3 cut(s) 134, 227, 309
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 224, 229
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 2 cut(s) 289, 363
HpyF3I CTNAG 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 4 cut(s) 33, 254, 328, 417
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
Kzo9I GATC 2 cut(s) 372, 377
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 6 cut(s) 105, 149, 283, 348, 366, 366
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 70
MalI GATC 2 cut(s) 374, 379
MboI GATC 2 cut(s) 372, 377
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 377
MluCI AATT 1 cut(s) 427
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 4 cut(s) 15, 192, 211, 255
MroNI GCCGGC 1 cut(s) 352
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 3 cut(s) 71, 412, 418
MspA1I CMGCKG 1 cut(s) 286
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 1 cut(s) 353
MvnI CGCG 1 cut(s) 228
NaeI GCCGGC 1 cut(s) 354
NdeI CATATG 1 cut(s) 87
NdeII GATC 2 cut(s) 372, 377
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 4 cut(s) 33, 254, 328, 417
NlaIV GGNNCC 1 cut(s) 351
NruI TCGCGA 1 cut(s) 228
PaeR7I CTCGAG 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 288
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 351
PsuI RGATCY 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 286
RruI TCGCGA 1 cut(s) 228
RsaI GTAC 4 cut(s) 80, 207, 296, 322
RsaNI GTAC 4 cut(s) 79, 206, 295, 321
RseI CAYNNNNRTG 3 cut(s) 71, 412, 418
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 2 cut(s) 372, 377
SchI GAGTC 1 cut(s) 35
SetI ASST 8 cut(s) 10, 121, 133, 141, 184, 275, 288, 302
SfaNI GCATC 1 cut(s) 70
Sfr274I CTCGAG 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 132
SmiMI CAYNNNNRTG 3 cut(s) 71, 412, 418
SmlI CTYRAG 2 cut(s) 132, 140
SmoI CTYRAG 2 cut(s) 132, 140
Sse9I AATT 1 cut(s) 427
TaaI ACNGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 133
TasI AATT 1 cut(s) 427
TatI WGTACW 2 cut(s) 205, 294
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 74, 168
Vha464I CTTAAG 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.