Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010613

Physical Location & Seq

Genomic Coordinates Reverse (-)

62651113 .. 62661051

Gene Structure 9939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTTTATGGTCGAATTGGGGATACGGGGTTATCGAATATAAGAAATTGGTGTTTTCGTCTCTCGAGCTCAACAAGCAATTTCGGAAGAAGTGGTGTTTCAGATCCCGATTCGAGAGAGTCGGTATTCATTAAACGAATTTTGGCTGCTCCCTATGAGAAAGAGGTTGAATTCGAGCTTGTTCCGATAGACATGAGAGCTTGTGAACATAAGAGGGAGTCATGTGCAAAGACCAAGAGACCATCAAAAGACAAGTGGCAAGCCTCTACCTCTGGCCTTAAAGACTTGATATCCCCTACCTTCAACCTTGAGAAAACAACTGAACTTTCTAGTCGTGAAAAGGTCGAATATGGACCTTCAAGCACTTTGGGTCCGATCATTGTACTACATGGGCGAGTTGAGAGCCGAGTATGGGATGCTCAAGAGTGTGAGACACTCCGACCCGAGCCTGGGACACTCCCTTCCTACCGAATCTTTTTTACTTTCAGTGTTCATAAAGAATATTGCAAAGATTTTAATGAAGTTAACACTAATGGTTTTGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

182

Amino Acids

20.7

Weight (kDa)

7.62

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010613)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0370471 RchiOBHm_Chr2g0089841 RchiOBHm_Chr7g0237531 RchiOBHm_Chr7g0238251
rosa_laevigata	RLG00000029666
rosa_roxburghii	Rroxscaffold_3G00255990 Rroxscaffold_3G00261430 Rroxscaffold_3G00273570 Rroxscaffold_4G00295690 Rroxscaffold_5G00382900 Rroxscaffold_5G00383610 Rroxscaffold_6G00400840 Rroxscaffold_7G00164670 Rroxscaffold_7G00170930 Rroxscaffold_7G00202310
rosa_samantha	Rh1CG051900 Rh1DG056100 Rh1DG057200 Rh5BG136700 Rh6BG044600 Rh7AG461600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	2 cut(s)	138, 170
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	3 cut(s)	412, 449, 450
AgsI	TTSAA	3 cut(s)	170, 304, 360
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	3 cut(s)	69, 178, 200
AluI	AGCT	3 cut(s)	69, 178, 200
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	3 cut(s)	65, 232, 425
AlwI	GGATC	1 cut(s)	98
Ama87I	CYCGRG	2 cut(s)	64, 443
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	138, 170
AspS9I	GGNCC	2 cut(s)	353, 371
AvaI	CYCGRG	2 cut(s)	64, 443
AvaII	GGWCC	2 cut(s)	353, 371
BanII	GRGCYC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	450
BciVI	GTATCC	1 cut(s)	16
BcoDI	GTCTC	3 cut(s)	65, 232, 425
BfaI	CTAG	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	2 cut(s)	353, 371
BmeT110I	CYCGRG	2 cut(s)	64, 443
BmgT120I	GGNCC	2 cut(s)	353, 371
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	406
BpuEI	CTTGAG	2 cut(s)	329, 405
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 449, 450
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	3 cut(s)	412, 449, 450
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	71
BsiHKCI	CYCGRG	2 cut(s)	64, 443
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	3 cut(s)	412, 449, 450
BsmAI	GTCTC	3 cut(s)	65, 232, 425
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	276
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	2 cut(s)	64, 443
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	103, 375
BspANI	GGCC	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	2 cut(s)	103, 375
Bst2UI	CCWGG	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	2 cut(s)	106, 378
BstMAI	GTCTC	3 cut(s)	65, 232, 425
BstMBI	GATC	2 cut(s)	103, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	353, 371
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	3 cut(s)	193, 222, 389
CviJI	RGCY	8 cut(s)	69, 146, 178, 200, 263, 276, 405, 448
CviKI_1	RGCY	8 cut(s)	69, 146, 178, 200, 263, 276, 405, 448
CviQI	GTAC	1 cut(s)	383
DpnI	GATC	2 cut(s)	105, 377
DpnII	GATC	2 cut(s)	103, 375
Ecl136II	GAGCTC	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	353, 371
Eco53kI	GAGCTC	1 cut(s)	69
Eco88I	CYCGRG	2 cut(s)	64, 443
EcoICRI	GAGCTC	1 cut(s)	69
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	3 cut(s)	196, 225, 392
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	3 cut(s)	192, 221, 388
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	196, 225, 392
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	4 cut(s)	110, 119, 218, 471
HpaI	GTTAAC	1 cut(s)	526
Hpy166II	GTNNAC	2 cut(s)	206, 526
Hpy188I	TCNGA	5 cut(s)	86, 103, 186, 375, 440
Hpy188III	TCNNGA	5 cut(s)	64, 107, 114, 335, 422
Hpy8I	GTNNAC	2 cut(s)	206, 526
HpyAV	CCTTC	3 cut(s)	310, 366, 471
HpyCH4V	TGCA	2 cut(s)	227, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	196, 225, 392
KspAI	GTTAAC	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	103, 375
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	3 cut(s)	258, 435, 462
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	330
MalI	GATC	2 cut(s)	105, 377
MboI	GATC	2 cut(s)	103, 375
MboII	GAAGA	1 cut(s)	99
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	6 cut(s)	15, 46, 79, 138, 170, 544
MlyI	GAGTC	2 cut(s)	128, 227
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	4 cut(s)	157, 207, 274, 280
MseI	TTAA	4 cut(s)	132, 279, 516, 525
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	2 cut(s)	103, 375
NlaIII	CATG	3 cut(s)	196, 225, 392
NlaIV	GGNNCC	1 cut(s)	372
NmeAIII	GCCGAG	1 cut(s)	431
PaeR7I	CTCGAG	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	110, 471
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	127, 226
PpsI	GAGTC	2 cut(s)	127, 226
Psp124BI	GAGCTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	2 cut(s)	353, 371
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	4 cut(s)	132, 279, 516, 525
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	103, 375
Sau96I	GGNCC	2 cut(s)	353, 371
SchI	GAGTC	2 cut(s)	128, 227
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	9 cut(s)	71, 168, 180, 202, 272, 302, 309, 345, 358
SfaNI	GCATC	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	64
SinI	GGWCC	2 cut(s)	353, 371
SlaI	CTCGAG	1 cut(s)	64
SmlI	CTYRAG	3 cut(s)	64, 308, 420
SmoI	CTYRAG	3 cut(s)	64, 308, 420
Sse9I	AATT	6 cut(s)	15, 46, 79, 138, 170, 544
SspI	AATATT	1 cut(s)	503
SspMI	CTAG	1 cut(s)	330
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	448
TaqI	TCGA	6 cut(s)	13, 35, 65, 113, 174, 345
TasI	AATT	6 cut(s)	15, 46, 79, 138, 170, 544
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	2 cut(s)	110, 471
Tru1I	TTAA	4 cut(s)	132, 279, 516, 525
Tru9I	TTAA	4 cut(s)	132, 279, 516, 525
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	3 cut(s)	118, 482, 534
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	353, 371
XapI	RAATTY	2 cut(s)	138, 170
XhoI	CTCGAG	1 cut(s)	64
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.