RchiOBHm_Chr1g0370761
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012871
Physical Location & Seq
Reverse (-)
60194747 .. 60196717
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1110 bp
ATGAAGATATCAAGTGAAGGTACCAGTCAAGCTTCTAAAGCAAGTTTATCATCTTCTAGCCAGAGCAAGAAGGAACGTGGTGACGATGAGGAGGTGTTGGATAAGGATAGCCAGCAGCAGCCCAGCAGCAAGAATGGTGTTAGCTCCAGTAGCAGCACCATCGAAGAGAACGAAAAGTCGAAGGGTGCTTCAGGTGGATCTGTACGACAGTATGTGCGTTCCAAGACTTCAAGGCTTCGATGGACTCCTGATCTCCATCTTTGCTTTATTCATGCGGTTGAAAGATTAGGAGGGCAAGAGAGAGCAACACCAAAATTAGTTCTTCAATTGATGAATGTCAAGGGTCTCAGCATAGCTCATGTCAAGAGCCATCTTCAAATGTATAGGAGCAAGAAGATGGAAGACCCAAATCAAGTTCTCTCAGAGCAAGGCTTCTACATTGAAGGTGGAGATAATCATATATACAACCTTACTCAACTCTCCGTGCTACAAAGTTTCAACCACCAATGGCCTTCTTCAGGATTAAGATATGGTGCTGATGCCTCTTGGAGTGGCCGCCACGACGACCACCACCACCAGATTTATAGCCCTTACAGTAATACAGGCAGGACTCAACTATTTGATCATCATAATACAAGAGTTACAGGACTTTATGGTTCAGTTGCTGAGAGAATATTTGGAAGCAACAACACCAGTACTAGTACAACTACTACTACTGCTACTACATCGAACAATATTCAATCACATACAACTCATATTCCATCCACTTGGAGATCAAGGCATCAAATTAGTACTCGAGTCCACAACGAGGTCCGACCCTTCAACAGGCAGTCATGGCAAGATCACAGTTGGTTGGACAACAGTATCGCCACTCGAAACACACTGAAAAGAAAGGCTCCGGATTCTTCAGATAATACTTCTAATTTGGATTTGAACTTATCACTGAAAGTTCCAGCAACAGAAGAAAAGGTACTGGGATTTGGTCTGTCTCTTTCTCTTTCTCCAGCTTCAGCGTCCTCGAAGCTCGGCTTGATGAAGAAGCTAGAAGGTAATGGTGGCCATGATAGGGAGCATGGGACAAAGACAAGTACTCTGGACCTCACTCTATGA

Protein Analysis

369

Amino Acids

40.88

Weight (kDa)

9.33

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 78 - 129 2.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 898
AciI CCGC 2 cut(s) 275, 556
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 2 cut(s) 553, 1057
AcuI CTGAAG 4 cut(s) 174, 501, 891, 993
AfaI GTAC 7 cut(s) 22, 204, 697, 703, 793, 972, 1090
AfiI CCNNNNNNNGG 4 cut(s) 518, 808, 825, 1066
AgsI TTSAA 9 cut(s) 231, 281, 326, 377, 443, 499, 740, 823, 934
AhlI ACTAGT 1 cut(s) 698
AluBI AGCT 6 cut(s) 32, 144, 356, 1007, 1024, 1042
AluI AGCT 6 cut(s) 32, 144, 356, 1007, 1024, 1042
Alw26I GTCTC 2 cut(s) 350, 993
AlwI GGATC 1 cut(s) 205
AlwNI CAGNNNCTG 1 cut(s) 665
Ama87I CYCGRG 1 cut(s) 795
Aor13HI TCCGGA 1 cut(s) 898
AoxI GGCC 3 cut(s) 509, 553, 1057
ApeKI GCWGC 4 cut(s) 115, 118, 126, 153
Asp718I GGTACC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 811, 1096
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 795
AvaII GGWCC 2 cut(s) 811, 1096
BaeI ACNNNNGTAYC 2 cut(s) 847, 880
BalI TGGCCA 1 cut(s) 1059
BanI GGYRCC 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 954, 986
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 4 cut(s) 127, 130, 138, 165
BccI CCATC 6 cut(s) 167, 234, 264, 378, 391, 769
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 2 cut(s) 350, 993
BcuI ACTAGT 1 cut(s) 698
BfaI CTAG 3 cut(s) 57, 699, 1043
BisI GCNGC 5 cut(s) 116, 119, 127, 154, 556
BlsI GCNGC 5 cut(s) 117, 120, 128, 155, 557
BmcAI AGTACT 3 cut(s) 697, 793, 1090
Bme18I GGWCC 2 cut(s) 811, 1096
BmeT110I CYCGRG 1 cut(s) 795
BmgT120I GGNCC 2 cut(s) 811, 1096
BmiI GGNNCC 2 cut(s) 22, 897
BmrI ACTGGG 1 cut(s) 983
BmsI GCATC 2 cut(s) 529, 790
BmuI ACTGGG 1 cut(s) 983
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 2 cut(s) 130, 987
BsaBI GATNNNNATC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 898
Bsc4I CCNNNNNNNGG 4 cut(s) 518, 808, 825, 1066
Bse1I ACTGG 4 cut(s) 24, 147, 693, 978
Bse8I GATNNNNATC 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 898
BseGI GGATG 1 cut(s) 761
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 4 cut(s) 518, 808, 825, 1066
BseMII CTCAG 3 cut(s) 361, 435, 657
BseNI ACTGG 4 cut(s) 24, 147, 693, 978
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 4 cut(s) 127, 130, 138, 165
BseYI CCCAGC 1 cut(s) 122
BshFI GGCC 3 cut(s) 511, 555, 1059
BshNI GGYRCC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 795
BsiSI CCGG 1 cut(s) 899
BslFI GGGAC 1 cut(s) 1090
BslI CCNNNNNNNGG 4 cut(s) 518, 808, 825, 1066
BsmAI GTCTC 2 cut(s) 350, 993
BsmFI GGGAC 1 cut(s) 1090
BsnI GGCC 3 cut(s) 511, 555, 1059
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 795
Bsp13I TCCGGA 1 cut(s) 898
Bsp143I GATC 5 cut(s) 197, 250, 622, 773, 841
BspACI CCGC 2 cut(s) 275, 556
BspANI GGCC 3 cut(s) 511, 555, 1059
BspCNI CTCAG 3 cut(s) 360, 434, 658
BspEI TCCGGA 1 cut(s) 898
BspLI GGNNCC 2 cut(s) 22, 897
BspPI GGATC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 350
BsrI ACTGG 4 cut(s) 24, 147, 693, 978
BssMI GATC 5 cut(s) 197, 250, 622, 773, 841
Bst4CI ACNGT 4 cut(s) 210, 596, 848, 863
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 3 cut(s) 347, 421, 666
BstENI CCTNNNNNAGG 2 cut(s) 516, 823
BstF5I GGATG 1 cut(s) 761
BstKTI GATC 5 cut(s) 200, 253, 625, 776, 844
BstMAI GTCTC 2 cut(s) 350, 993
BstMBI GATC 5 cut(s) 197, 250, 622, 773, 841
BstMWI GCNNNNNNNGC 3 cut(s) 38, 150, 835
BstV1I GCAGC 4 cut(s) 127, 130, 138, 165
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 768
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 3 cut(s) 511, 555, 1059
BtsCI GGATG 1 cut(s) 761
BtsIMutI CAGTG 2 cut(s) 881, 941
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 665
Cfr13I GGNCC 2 cut(s) 811, 1096
CseI GACGC 1 cut(s) 1002
Csp6I GTAC 7 cut(s) 21, 203, 696, 702, 792, 971, 1089
CviAII CATG 5 cut(s) 272, 359, 834, 1061, 1073
CviQI GTAC 7 cut(s) 21, 203, 696, 702, 792, 971, 1089
DdeI CTNAG 3 cut(s) 347, 421, 666
DpnI GATC 5 cut(s) 199, 252, 624, 775, 843
DpnII GATC 5 cut(s) 197, 250, 622, 773, 841
EaeI YGGCCR 2 cut(s) 553, 1057
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 350
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 811, 1096
Eco57I CTGAAG 4 cut(s) 174, 501, 891, 993
Eco88I CYCGRG 1 cut(s) 795
EcoNI CCTNNNNNAGG 2 cut(s) 516, 823
EcoRV GATATC 1 cut(s) 9
FaeI CATG 5 cut(s) 275, 362, 837, 1064, 1076
FalI AAGNNNNNCTT 2 cut(s) 1013, 1045
FaqI GGGAC 1 cut(s) 1090
FatI CATG 5 cut(s) 271, 358, 833, 1060, 1072
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 5 cut(s) 116, 119, 127, 154, 556
FokI GGATG 1 cut(s) 748
Fsp4HI GCNGC 5 cut(s) 116, 119, 127, 154, 556
FspBI CTAG 3 cut(s) 57, 699, 1043
GluI GCNGC 5 cut(s) 116, 119, 127, 154, 556
GsaI CCCAGC 1 cut(s) 126
GsuI CTGGAG 2 cut(s) 130, 987
HaeIII GGCC 3 cut(s) 511, 555, 1059
HapII CCGG 1 cut(s) 899
HgaI GACGC 1 cut(s) 1002
Hin1II CATG 5 cut(s) 275, 362, 837, 1064, 1076
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 4 cut(s) 244, 610, 798, 902
HpaII CCGG 1 cut(s) 899
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 802
Hpy188I TCNGA 3 cut(s) 424, 815, 910
Hpy188III TCNNGA 5 cut(s) 248, 364, 519, 899, 1094
Hpy8I GTNNAC 1 cut(s) 802
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 7 cut(s) 11, 64, 175, 437, 522, 829, 1040
HpyCH4III ACNGT 4 cut(s) 210, 596, 848, 863
HpyCH4IV ACGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 150, 835
HpyF3I CTNAG 3 cut(s) 347, 421, 666
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 5 cut(s) 275, 362, 837, 1064, 1076
Kpn2I TCCGGA 1 cut(s) 898
KpnI GGTACC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 5 cut(s) 197, 250, 622, 773, 841
LmnI GCTCC 4 cut(s) 149, 387, 901, 1069
Lsp1109I GCAGC 4 cut(s) 127, 130, 138, 165
LweI GCATC 2 cut(s) 529, 790
MaeI CTAG 3 cut(s) 57, 699, 1043
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 2 cut(s) 80, 640
MalI GATC 5 cut(s) 199, 252, 624, 775, 843
MboI GATC 5 cut(s) 197, 250, 622, 773, 841
MfeI CAATTG 1 cut(s) 326
MflI RGATCY 1 cut(s) 197
MlsI TGGCCA 1 cut(s) 1059
MluCI AATT 4 cut(s) 314, 326, 786, 922
MluNI TGGCCA 1 cut(s) 1059
MlyI GAGTC 3 cut(s) 238, 604, 807
MmeI TCCRAC 3 cut(s) 78, 834, 838
MnlI CCTC 7 cut(s) 82, 85, 284, 553, 802, 1027, 1109
Mox20I TGGCCA 1 cut(s) 1059
MroI TCCGGA 1 cut(s) 898
MscI TGGCCA 1 cut(s) 1059
MseI TTAA 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 1059
MspI CCGG 1 cut(s) 899
MunI CAATTG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 38, 150, 835
NdeII GATC 5 cut(s) 197, 250, 622, 773, 841
NlaIII CATG 5 cut(s) 275, 362, 837, 1064, 1076
NlaIV GGNNCC 2 cut(s) 22, 897
NmeAIII GCCGAG 1 cut(s) 1005
NmuCI GTSAC 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 795
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 902
PkrI GCNGC 5 cut(s) 117, 120, 128, 155, 557
PleI GAGTC 3 cut(s) 238, 604, 806
PpsI GAGTC 3 cut(s) 238, 604, 806
PspFI CCCAGC 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 22, 897
PspPI GGNCC 2 cut(s) 811, 1096
PspXI VCTCGAGB 1 cut(s) 795
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 7 cut(s) 22, 204, 697, 703, 793, 972, 1090
RsaNI GTAC 7 cut(s) 21, 203, 696, 702, 792, 971, 1089
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 5 cut(s) 116, 119, 127, 154, 556
Sau3AI GATC 5 cut(s) 197, 250, 622, 773, 841
Sau96I GGNCC 2 cut(s) 811, 1096
ScaI AGTACT 3 cut(s) 697, 793, 1090
SchI GAGTC 3 cut(s) 238, 604, 807
SfaNI GCATC 2 cut(s) 529, 790
Sfr274I CTCGAG 1 cut(s) 795
SinI GGWCC 2 cut(s) 811, 1096
SlaI CTCGAG 1 cut(s) 795
SmlI CTYRAG 1 cut(s) 795
SmoI CTYRAG 1 cut(s) 795
SpeI ACTAGT 1 cut(s) 698
Sse9I AATT 4 cut(s) 314, 326, 786, 922
SsiI CCGC 2 cut(s) 275, 556
SspI AATATT 2 cut(s) 675, 736
SspMI CTAG 3 cut(s) 57, 699, 1043
TaaI ACNGT 4 cut(s) 210, 596, 848, 863
TaiI ACGT 1 cut(s) 79
TaqI TCGA 7 cut(s) 162, 179, 238, 728, 796, 874, 1019
TasI AATT 4 cut(s) 314, 326, 786, 922
TatI WGTACW 4 cut(s) 695, 701, 791, 1088
TauI GCSGC 1 cut(s) 558
TfiI GAWTC 1 cut(s) 902
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 2 cut(s) 888, 948
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 4 cut(s) 115, 118, 126, 153
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 17, 260, 347, 1049
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 2 cut(s) 888, 948
VpaK11BI GGWCC 2 cut(s) 811, 1096
XagI CCTNNNNNAGG 2 cut(s) 516, 823
XhoI CTCGAG 1 cut(s) 795
XspI CTAG 3 cut(s) 57, 699, 1043
ZrmI AGTACT 3 cut(s) 697, 793, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.