RchiOBHm_Chr1g0374351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007775
Physical Location & Seq
Reverse (-)
62190869 .. 62193672
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 831 bp
ATGGAGGAAAGGGGTCTGAGGCAGTATGAGTGCGTCAGGCGGGCTTGGCATAGCGATAGGCACCAACCCATGAGAGGCTCCATTATTCAGCAGATGTTCAAGGTCGTCAGTGAAGTTCATAGCTCCAAAACGAAGAACAACAAGGAGTGGCAGGAAAAGCTGGCCATGGTGGTTTTGAGAGCAGAGAAATCATGTATTCCAAAGACAATTCAGAGGCTGAGTGATGCGGAAAGCATGAACACGATAGCAAGAGACTCCGTCAAGCGTCGAAAGCCATATGAGATGAGCTGGAATCCACTAGCAATTACGGGCACAGCCGGCACTGAAACCGGGGACCTTTTGCCGCCGTGTGTTGAAGCTGCACTTAATCTGGGTTGTGTTGCGGTAAGAGCTTCAAGAAGCCAATGCCACAGTAATCCAAGGAGTTACCACATTTCGAGACCACAAGAACCCCCTTCTCCACCCACTAGAATTTTAGATAGACCATCTGATGAACGACGCCCTCCGTTTTCTCCTCCACATCACCCGGGAAATCAATCAAACTTTGCAAGACCCTCAGCTGTGAGTTCTGCACATTTGGTCCCAGAAGCTCACAGTCATGCCAACCAAGGTAGTAACCTGACTAACCCTCGGCATTACCCATTTTCACTTGAGAATGTTCCTGGTGGCCATAACCAGGTAACAACAATGTCAACCAACAACCAATTGAACTTAGGTTCAGTATATCCATTGTGTTATGGATCTCACTATCAAACTGAAGCATCCCAGTTAGGTCCTCAGGTCCCAGAAAATGCACATTCTGGGACTATATATGTTGAATTCCCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

30.87

Weight (kDa)

9.18

Isoelectric Point (pI)

60.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 4 cut(s) 40, 227, 344, 383
AclWI GGATC 1 cut(s) 748
AcoI YGGCCR 2 cut(s) 162, 667
AcsI RAATTY 2 cut(s) 471, 818
AcuI CTGAAG 1 cut(s) 777
AcyI GRCGYC 1 cut(s) 499
AfiI CCNNNNNNNGG 2 cut(s) 74, 676
AgsI TTSAA 5 cut(s) 100, 356, 396, 709, 818
AjnI CCWGG 2 cut(s) 661, 675
AluBI AGCT 7 cut(s) 123, 160, 288, 359, 392, 560, 590
AluI AGCT 7 cut(s) 123, 160, 288, 359, 392, 560, 590
Alw26I GTCTC 2 cut(s) 246, 433
AlwI GGATC 1 cut(s) 748
AlwNI CAGNNNCTG 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 526
AoxI GGCC 2 cut(s) 162, 667
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 2 cut(s) 471, 818
AspS9I GGNCC 4 cut(s) 334, 580, 773, 781
AsuC2I CCSGG 3 cut(s) 331, 527, 528
AsuHPI GGTGA 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 526
AvaII GGWCC 4 cut(s) 334, 580, 773, 781
AxyI CCTNAGG 1 cut(s) 777
BaeGI GKGCMC 1 cut(s) 314
BalI TGGCCA 2 cut(s) 164, 669
BanI GGYRCC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 556
BbvI GCAGC 1 cut(s) 346
BccI CCATC 1 cut(s) 493
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 2 cut(s) 663, 677
BcnI CCSGG 3 cut(s) 331, 527, 528
BcoDI GTCTC 2 cut(s) 246, 433
BfaI CTAG 2 cut(s) 299, 468
BisI GCNGC 2 cut(s) 344, 360
BlsI GCNGC 2 cut(s) 345, 361
Bme1390I CCNGG 5 cut(s) 331, 527, 528, 663, 677
Bme18I GGWCC 4 cut(s) 334, 580, 773, 781
BmeT110I CYCGRG 1 cut(s) 526
BmgT120I GGNCC 4 cut(s) 334, 580, 773, 781
BmiI GGNNCC 5 cut(s) 62, 79, 335, 582, 783
BmrFI CCNGG 5 cut(s) 331, 527, 528, 663, 677
BmrI ACTGGG 1 cut(s) 760
BmsI GCATC 2 cut(s) 214, 770
BmuI ACTGGG 1 cut(s) 760
Bpu10I CCTNAGC 1 cut(s) 556
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 3 cut(s) 331, 527, 528
BsaHI GRCGYC 1 cut(s) 499
BsaI GGTCTC 1 cut(s) 433
BsaJI CCNNGG 6 cut(s) 165, 330, 419, 526, 607, 629
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 676
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 766
Bse21I CCTNAGG 1 cut(s) 777
BseBI CCWGG 2 cut(s) 663, 677
BseDI CCNNGG 6 cut(s) 165, 330, 419, 526, 607, 629
BseGI GGATG 1 cut(s) 761
BseLI CCNNNNNNNGG 2 cut(s) 74, 676
BseMII CTCAG 4 cut(s) 8, 209, 570, 791
BseNI ACTGG 1 cut(s) 766
BseRI GAGGAG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 1 cut(s) 346
BsgI GTGCAG 2 cut(s) 345, 555
BshFI GGCC 2 cut(s) 164, 669
BshNI GGYRCC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 526
BsiSI CCGG 3 cut(s) 318, 330, 527
BslFI GGGAC 4 cut(s) 347, 566, 767, 817
BslI CCNNNNNNNGG 2 cut(s) 74, 676
BsmAI GTCTC 2 cut(s) 246, 433
BsmFI GGGAC 4 cut(s) 347, 566, 767, 817
BsnI GGCC 2 cut(s) 164, 669
Bso31I GGTCTC 1 cut(s) 433
BsoBI CYCGRG 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 1 cut(s) 740
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 4 cut(s) 40, 227, 344, 383
BspANI GGCC 2 cut(s) 164, 669
BspCNI CTCAG 4 cut(s) 9, 210, 569, 790
BspLI GGNNCC 5 cut(s) 62, 79, 335, 582, 783
BspPI GGATC 1 cut(s) 748
BspT107I GGYRCC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 433
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 1 cut(s) 766
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 6 cut(s) 165, 330, 419, 526, 607, 629
BssMI GATC 1 cut(s) 740
BssNI GRCGYC 1 cut(s) 499
BssT1I CCWWGG 3 cut(s) 165, 419, 607
Bst2UI CCWGG 2 cut(s) 663, 677
Bst4CI ACNGT 2 cut(s) 413, 596
BstACI GRCGYC 1 cut(s) 499
BstC8I GCNNGC 3 cut(s) 42, 162, 319
BstDEI CTNAG 5 cut(s) 17, 218, 556, 712, 777
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 761
BstKTI GATC 1 cut(s) 743
BstMAI GTCTC 2 cut(s) 246, 433
BstMBI GATC 1 cut(s) 740
BstMWI GCNNNNNNNGC 5 cut(s) 46, 157, 271, 318, 389
BstNI CCWGG 2 cut(s) 663, 677
BstSCI CCNGG 5 cut(s) 329, 525, 526, 661, 675
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 740
BstYI RGATCY 1 cut(s) 740
Bsu36I CCTNAGG 1 cut(s) 777
BsuRI GGCC 2 cut(s) 164, 669
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 761
BtsIMutI CAGTG 2 cut(s) 115, 321
Cac8I GCNNGC 3 cut(s) 42, 162, 319
CaiI CAGNNNCTG 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 4 cut(s) 334, 580, 773, 781
Cfr9I CCCGGG 1 cut(s) 526
CseI GACGC 3 cut(s) 22, 254, 507
CsiI ACCWGGT 1 cut(s) 675
CviAII CATG 5 cut(s) 70, 166, 192, 235, 599
DdeI CTNAG 5 cut(s) 17, 218, 556, 712, 777
DpnI GATC 1 cut(s) 742
DpnII GATC 1 cut(s) 740
EaeI YGGCCR 2 cut(s) 162, 667
Eco130I CCWWGG 3 cut(s) 165, 419, 607
Eco31I GGTCTC 1 cut(s) 433
Eco47I GGWCC 4 cut(s) 334, 580, 773, 781
Eco57I CTGAAG 1 cut(s) 777
Eco81I CCTNAGG 1 cut(s) 777
Eco88I CYCGRG 1 cut(s) 526
EcoO109I RGGNCCY 3 cut(s) 334, 773, 781
EcoRI GAATTC 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 661, 675
EcoT14I CCWWGG 3 cut(s) 165, 419, 607
ErhI CCWWGG 3 cut(s) 165, 419, 607
FaeI CATG 5 cut(s) 73, 169, 195, 238, 602
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 4 cut(s) 347, 566, 767, 817
FatI CATG 5 cut(s) 69, 165, 191, 234, 598
FauI CCCGC 1 cut(s) 33
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 344, 360
FokI GGATG 1 cut(s) 748
Fsp4HI GCNGC 2 cut(s) 344, 360
FspBI CTAG 2 cut(s) 299, 468
GluI GCNGC 2 cut(s) 344, 360
HaeIII GGCC 2 cut(s) 164, 669
HapII CCGG 3 cut(s) 318, 330, 527
HgaI GACGC 3 cut(s) 22, 254, 507
Hin1I GRCGYC 1 cut(s) 499
Hin1II CATG 5 cut(s) 73, 169, 195, 238, 602
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HinfI GANTC 2 cut(s) 254, 292
HpaII CCGG 3 cut(s) 318, 330, 527
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 1 cut(s) 693
Hpy188I TCNGA 3 cut(s) 18, 213, 490
Hpy188III TCNNGA 2 cut(s) 396, 438
Hpy8I GTNNAC 1 cut(s) 693
Hpy99I CGWCG 2 cut(s) 270, 501
HpyAV CCTTC 1 cut(s) 465
HpyCH4III ACNGT 2 cut(s) 413, 596
HpyCH4V TGCA 4 cut(s) 362, 548, 572, 794
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 157, 271, 318, 389
HpyF3I CTNAG 5 cut(s) 17, 218, 556, 712, 777
Hsp92I GRCGYC 1 cut(s) 499
Hsp92II CATG 5 cut(s) 73, 169, 195, 238, 602
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Kzo9I GATC 1 cut(s) 740
LmnI GCTCC 2 cut(s) 83, 128
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 2 cut(s) 214, 770
MabI ACCWGGT 1 cut(s) 675
MaeI CTAG 2 cut(s) 299, 468
MaeIII GTNAC 3 cut(s) 425, 614, 679
MalI GATC 1 cut(s) 742
MboI GATC 1 cut(s) 740
MboII GAAGA 1 cut(s) 145
MfeI CAATTG 1 cut(s) 704
MflI RGATCY 1 cut(s) 740
MhlI GDGCHC 1 cut(s) 314
MlsI TGGCCA 2 cut(s) 164, 669
MluCI AATT 5 cut(s) 207, 303, 471, 704, 818
MluNI TGGCCA 2 cut(s) 164, 669
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 8 cut(s) 12, 68, 207, 513, 525, 565, 639, 786
Mox20I TGGCCA 2 cut(s) 164, 669
MroNI GCCGGC 1 cut(s) 317
MscI TGGCCA 2 cut(s) 164, 669
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 597
Msp20I TGGCCA 2 cut(s) 164, 669
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 3 cut(s) 318, 330, 527
MspR9I CCNGG 5 cut(s) 331, 527, 528, 663, 677
MunI CAATTG 1 cut(s) 704
MvaI CCWGG 2 cut(s) 663, 677
MwoI GCNNNNNNNGC 5 cut(s) 46, 157, 271, 318, 389
NaeI GCCGGC 1 cut(s) 319
NciI CCSGG 3 cut(s) 331, 527, 528
NcoI CCATGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 740
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 5 cut(s) 73, 169, 195, 238, 602
NlaIV GGNNCC 5 cut(s) 62, 79, 335, 582, 783
NmeAIII GCCGAG 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 292
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 345, 361
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PpuMI RGGWCCY 3 cut(s) 334, 773, 781
Psp5II RGGWCCY 3 cut(s) 334, 773, 781
Psp6I CCWGG 2 cut(s) 661, 675
PspGI CCWGG 2 cut(s) 661, 675
PspN4I GGNNCC 5 cut(s) 62, 79, 335, 582, 783
PspPI GGNCC 4 cut(s) 334, 580, 773, 781
PspPPI RGGWCCY 3 cut(s) 334, 773, 781
PstNI CAGNNNCTG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 740
PsyI GACNNNGTC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 560
RseI CAYNNNNRTG 1 cut(s) 597
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 344, 360
Sau3AI GATC 1 cut(s) 740
Sau96I GGNCC 4 cut(s) 334, 580, 773, 781
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 5 cut(s) 331, 527, 528, 663, 677
SduI GDGCHC 1 cut(s) 314
SexAI ACCWGGT 1 cut(s) 675
SfaNI GCATC 2 cut(s) 214, 770
SinI GGWCC 4 cut(s) 334, 580, 773, 781
SmaI CCCGGG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 5 cut(s) 207, 303, 471, 704, 818
SsiI CCGC 4 cut(s) 40, 227, 344, 383
SspMI CTAG 2 cut(s) 299, 468
StyD4I CCNGG 5 cut(s) 329, 525, 526, 661, 675
StyI CCWWGG 3 cut(s) 165, 419, 607
TaaI ACNGT 2 cut(s) 413, 596
TaqI TCGA 2 cut(s) 268, 437
TasI AATT 5 cut(s) 207, 303, 471, 704, 818
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 2 cut(s) 115, 328
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 3 cut(s) 107, 251, 507
TspGWI ACGGA 2 cut(s) 247, 495
TspMI CCCGGG 1 cut(s) 526
TspRI CASTG 2 cut(s) 115, 328
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 4 cut(s) 334, 580, 773, 781
XapI RAATTY 2 cut(s) 471, 818
XmaI CCCGGG 1 cut(s) 526
XspI CTAG 2 cut(s) 299, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.