RchiOBHm_Chr1g0377891

Transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
64567123 .. 64569401
2279 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1629 bp
ATGGCTTCTTCTGTCAAAGTGGTTCTAGGCTCAATTGCCTTTGCAACATTCTGGATATTGGCGGTGTTTCCGGCTGTCCCTTTTCTGCCAATTGGGAGGACTGCAGGGTCTCTTTTTGGGGCAATGCTGATGGTTGTGTTCCGAGTCCTAACTCCGGATCAAGCCTACGCTGCAATTGATCTCCCAATCATTGGACTTTTGTTTGGGACAATGGTTGTGAGTATCTATCTTGAAAGAGCAGATATGTTCAAGTATTTGGGCAAGTTACTCTTGTGGAAAAGCCAAGGAGCAAAGGACTTGATATGTAGAGTCTGTTTGATTTCTGCCATTTCAAGTGCTTTTTTAACCAATGACACCGCTTGCGTGGTTTTGACCGAGTTTGTACTAAAAGTTGCAAGACAACACAACTTACCGCCTCGTCCGTTCCTGCTTGCACTTGCCACGAGTGCAAATATTGGGTCTGCAGCAACCCCAATCGGCAATCCTCAGAACCTGGTTATAGCTGTTTGGAGTAACATTCCTTTTGGAAAGTTTGTTTTAGGAATTTTCCCTGCAATGCTTGTAGGAGTTTGTGTGAATGCTTTGCTTCTTTTGTGTATGTTCTGGAAGTTGTTGTTTATCCAGAAGGATGTGGAGGACGCAACTGGAGAGGTTGTCGGGGAGGAGGATGTGATTTCTCATCGGTTTTCACCAGCCTTCAACCCAGAGGAAACCAAGAGTCATCCGTTTTCACCAGCCTTCAACCCAGAGGAAACCAAGAGTCTGCTAGGTTCTCCATTTGTTGAGAACCGTAGGAACCGTGTGCCTTCAGCTGAGAACGAGATCAAGAGGGTTTCAAGTGCTGGTACTTTTGAGTCTGCAAGAAATTCAAGTGCGTCAAACACTGAGGAGACAAATGATGTGGCTTCCCAGAAAAAGGAGGAACCAGTTGCTCTGAAAATGACTAGATCAAAGGAAAAACTTGGAGATAATTGTACTACTACAGAGTCTTTGGAAGGAAAGGAAAATTTGACCACAAAATGGAGAAGGATGTTGTGGAAATCTGGCGTTTATTTTGTTACCATAGGAATGTTGGTTGCGTTTCTTATGGACCTGAGCATGTCATGGTGCGCGATTACTGCTGCACTTGCTCTAGTTGTTCTTGATTTCAAGGATGCTCGGCCATGCCTAGAAAAGGTATCATATTCACTTTTAATTTTCTTCTGTGGTATGTTTATAACTGTGGATGGCTTCAACAAAACTGAAATTCCAAGCACTCTTTGGCACTTCATGAAGCCCCATGCGAAAATTGATCATGTTGGCGGAATAGCAGTTCTTGCTGTTACCATACTTGTACTATCAAACGTGGCTTCAAACGTGCCAACTGTTCTCTTGCTTGGAGGACGAGTGGCAGCATCCGCAGCTTTAATATCAGCAGCGGATGAGAAGAAGGCATGGCTGCTTCTAGCTTGGGTGAGCACCGTGGCCGGGAACCTCTCGCTAATGGGATCAGCAGCCAACTTGATAGTATGTGAACAGGCTCGCCAACCTCCACTCCTTGCATACAATTTGTCATTCTGGAGCCATCTCAAATTTGGGGTGCCGTCCACTATTATAGTCACTGCTATTGGTTTGACACTGATAAGATGA

Protein Analysis

542

Amino Acids

58.9

Weight (kDa)

8.59

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 25 - 489 1.2e-91 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1217
AasI GACNNNNNNGTC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 1579
AccB7I CCANNNNNTGG 2 cut(s) 191, 1020
AccII CGCG 1 cut(s) 1112
AccIII TCCGGA 1 cut(s) 154
AciI CCGC 6 cut(s) 62, 357, 413, 1302, 1398, 1418
AclWI GGATC 2 cut(s) 165, 1495
AcoI YGGCCR 2 cut(s) 1160, 1464
AcsI RAATTY 5 cut(s) 543, 865, 1006, 1245, 1571
AcuI CTGAAG 1 cut(s) 792
AfaI GTAC 4 cut(s) 384, 847, 976, 1335
AfiI CCNNNNNNNGG 6 cut(s) 154, 191, 916, 1020, 1174, 1467
AjnI CCWGG 1 cut(s) 492
AloI GAACNNNNNNTCC 2 cut(s) 1296, 1328
AluBI AGCT 4 cut(s) 503, 812, 1403, 1448
AluI AGCT 4 cut(s) 503, 812, 1403, 1448
Alw21I GWGCWC 1 cut(s) 1460
Alw26I GTCTC 2 cut(s) 114, 884
AlwI GGATC 2 cut(s) 165, 1495
AlwNI CAGNNNCTG 1 cut(s) 493
Aor13HI TCCGGA 1 cut(s) 154
AoxI GGCC 2 cut(s) 1160, 1464
ApeKI GCWGC 8 cut(s) 170, 464, 1121, 1391, 1400, 1415, 1438, 1493
ApoI RAATTY 5 cut(s) 543, 865, 1006, 1245, 1571
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AspLEI GCGC 1 cut(s) 1112
AspS9I GGNCC 1 cut(s) 1090
AsuC2I CCSGG 1 cut(s) 1468
AsuHPI GGTGA 3 cut(s) 681, 723, 1465
AvaII GGWCC 1 cut(s) 1090
BanI GGYRCC 1 cut(s) 1579
BauI CACGAG 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 1460
BbvI GCAGC 8 cut(s) 157, 476, 1108, 1403, 1412, 1425, 1427, 1505
BccI CCATC 3 cut(s) 124, 1220, 1572
BceAI ACGGC 1 cut(s) 1567
BciT130I CCWGG 1 cut(s) 494
BclI TGATCA 1 cut(s) 1291
BcnI CCSGG 1 cut(s) 1468
BcoDI GTCTC 2 cut(s) 114, 884
BfaI CTAG 6 cut(s) 26, 767, 945, 1133, 1169, 1445
BfmI CTRYAG 3 cut(s) 102, 462, 981
BisI GCNGC 8 cut(s) 171, 465, 1122, 1392, 1401, 1416, 1439, 1494
BlsI GCNGC 8 cut(s) 172, 466, 1123, 1393, 1402, 1417, 1440, 1495
Bme1390I CCNGG 2 cut(s) 494, 1468
Bme18I GGWCC 1 cut(s) 1090
BmgT120I GGNCC 1 cut(s) 1090
BmiI GGNNCC 5 cut(s) 797, 924, 1472, 1562, 1581
BmrFI CCNGG 2 cut(s) 494, 1468
BmsI GCATC 2 cut(s) 1144, 1403
BpmI CTGGAG 2 cut(s) 666, 1579
Bpu10I CCTNAGC 1 cut(s) 1094
BpuMI CCSGG 1 cut(s) 1468
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 283, 1461
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 8 cut(s) 558, 588, 639, 669, 1371, 1401, 1518, 1548
Bsc4I CCNNNNNNNGG 6 cut(s) 154, 191, 916, 1020, 1174, 1467
Bse1I ACTGG 2 cut(s) 649, 926
Bse3DI GCAATG 2 cut(s) 129, 561
BseAI TCCGGA 1 cut(s) 154
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 2 cut(s) 283, 1461
BseGI GGATG 8 cut(s) 634, 673, 721, 1035, 1159, 1231, 1394, 1426
BseLI CCNNNNNNNGG 6 cut(s) 154, 191, 916, 1020, 1174, 1467
BseMI GCAATG 2 cut(s) 129, 561
BseMII CTCAG 4 cut(s) 500, 804, 876, 1085
BseNI ACTGG 2 cut(s) 649, 926
BseRI GAGGAG 2 cut(s) 677, 902
BseXI GCAGC 8 cut(s) 157, 476, 1108, 1403, 1412, 1425, 1427, 1505
BsgI GTGCAG 1 cut(s) 1107
Bsh1236I CGCG 1 cut(s) 1112
BshFI GGCC 2 cut(s) 1162, 1466
BshNI GGYRCC 1 cut(s) 1579
BsiHKAI GWGCWC 1 cut(s) 1460
BsiSI CCGG 3 cut(s) 71, 155, 1467
BslFI GGGAC 2 cut(s) 62, 220
BslI CCNNNNNNNGG 6 cut(s) 154, 191, 916, 1020, 1174, 1467
BsmAI GTCTC 2 cut(s) 114, 884
BsmFI GGGAC 2 cut(s) 62, 220
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 2 cut(s) 1162, 1466
Bso31I GGTCTC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 1460
Bsp13I TCCGGA 1 cut(s) 154
Bsp143I GATC 6 cut(s) 157, 178, 822, 947, 1291, 1487
BspACI CCGC 6 cut(s) 62, 357, 413, 1302, 1398, 1418
BspANI GGCC 2 cut(s) 1162, 1466
BspCNI CTCAG 4 cut(s) 499, 805, 877, 1086
BspEI TCCGGA 1 cut(s) 154
BspFNI CGCG 1 cut(s) 1112
BspHI TCATGA 1 cut(s) 1269
BspLI GGNNCC 5 cut(s) 797, 924, 1472, 1562, 1581
BspMAI CTGCAG 2 cut(s) 106, 466
BspPI GGATC 2 cut(s) 165, 1495
BspT107I GGYRCC 1 cut(s) 1579
BspTNI GGTCTC 1 cut(s) 114
BsrDI GCAATG 2 cut(s) 129, 561
BsrI ACTGG 2 cut(s) 649, 926
BssECI CCNNGG 2 cut(s) 283, 1461
BssMI GATC 6 cut(s) 157, 178, 822, 947, 1291, 1487
BssSI CACGAG 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 283
Bst2BI CACGAG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 5 cut(s) 791, 800, 1222, 1366, 1462
BstAPI GCANNNNNTGC 1 cut(s) 1316
BstC8I GCNNGC 3 cut(s) 361, 432, 1522
BstDEI CTNAG 4 cut(s) 486, 813, 885, 1094
BstDSI CCRYGG 1 cut(s) 1461
BstENI CCTNNNNNAGG 1 cut(s) 1172
BstF5I GGATG 8 cut(s) 634, 673, 721, 1035, 1159, 1231, 1394, 1426
BstFNI CGCG 1 cut(s) 1112
BstHHI GCGC 1 cut(s) 1112
BstKTI GATC 6 cut(s) 160, 181, 825, 950, 1294, 1490
BstMAI GTCTC 2 cut(s) 114, 884
BstMBI GATC 6 cut(s) 157, 178, 822, 947, 1291, 1487
BstMWI GCNNNNNNNGC 7 cut(s) 170, 446, 1118, 1127, 1316, 1397, 1400
BstNI CCWGG 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 1102
BstSCI CCNGG 2 cut(s) 492, 1466
BstSFI CTRYAG 3 cut(s) 102, 462, 981
BstUI CGCG 1 cut(s) 1112
BstV1I GCAGC 8 cut(s) 157, 476, 1108, 1403, 1412, 1425, 1427, 1505
BsuRI GGCC 2 cut(s) 1162, 1466
BtgI CCRYGG 1 cut(s) 1461
BtsCI GGATG 8 cut(s) 634, 673, 721, 1035, 1159, 1231, 1394, 1426
BtsI GCAGTG 1 cut(s) 1599
BtsIMutI CAGTG 3 cut(s) 882, 1599, 1616
Cac8I GCNNGC 3 cut(s) 361, 432, 1522
CaiI CAGNNNCTG 1 cut(s) 493
CciI TCATGA 1 cut(s) 1269
CfoI GCGC 1 cut(s) 1112
Cfr13I GGNCC 1 cut(s) 1090
CseI GACGC 2 cut(s) 647, 864
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 4 cut(s) 383, 846, 975, 1334
CspCI CAANNNNNGTGG 2 cut(s) 882, 917
CviAII CATG 7 cut(s) 1099, 1104, 1164, 1270, 1280, 1295, 1434
CviQI GTAC 4 cut(s) 383, 846, 975, 1334
DdeI CTNAG 4 cut(s) 486, 813, 885, 1094
DpnI GATC 6 cut(s) 159, 180, 824, 949, 1293, 1489
DpnII GATC 6 cut(s) 157, 178, 822, 947, 1291, 1487
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 2 cut(s) 1160, 1464
EciI GGCGGA 1 cut(s) 1317
Eco130I CCWWGG 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 1090
Eco57I CTGAAG 1 cut(s) 792
EcoNI CCTNNNNNAGG 1 cut(s) 1172
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 7 cut(s) 1102, 1107, 1167, 1273, 1283, 1298, 1437
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 62, 220
FatI CATG 7 cut(s) 1098, 1103, 1163, 1269, 1279, 1294, 1433
FbaI TGATCA 1 cut(s) 1291
Fnu4HI GCNGC 8 cut(s) 171, 465, 1122, 1392, 1401, 1416, 1439, 1494
FokI GGATG 8 cut(s) 641, 680, 708, 1042, 1166, 1238, 1381, 1433
Fsp4HI GCNGC 8 cut(s) 171, 465, 1122, 1392, 1401, 1416, 1439, 1494
FspBI CTAG 6 cut(s) 26, 767, 945, 1133, 1169, 1445
GlaI GCGC 1 cut(s) 1111
GluI GCNGC 8 cut(s) 171, 465, 1122, 1392, 1401, 1416, 1439, 1494
GsuI CTGGAG 2 cut(s) 666, 1579
HaeIII GGCC 2 cut(s) 1162, 1466
HapII CCGG 3 cut(s) 71, 155, 1467
HgaI GACGC 2 cut(s) 647, 864
HhaI GCGC 1 cut(s) 1112
Hin1II CATG 7 cut(s) 1102, 1107, 1167, 1273, 1283, 1298, 1437
Hin6I GCGC 1 cut(s) 1110
HinP1I GCGC 1 cut(s) 1110
HinfI GANTC 6 cut(s) 144, 309, 718, 760, 854, 986
HpaII CCGG 3 cut(s) 71, 155, 1467
HphI GGTGA 3 cut(s) 681, 723, 1465
Hpy166II GTNNAC 2 cut(s) 1514, 1587
Hpy188I TCNGA 3 cut(s) 143, 489, 936
Hpy188III TCNNGA 9 cut(s) 52, 155, 230, 604, 622, 826, 1142, 1270, 1558
Hpy8I GTNNAC 2 cut(s) 1514, 1587
HpyAV CCTTC 7 cut(s) 619, 706, 748, 816, 989, 1020, 1423
HpyCH4III ACNGT 5 cut(s) 791, 800, 1222, 1366, 1462
HpyCH4IV ACGT 2 cut(s) 1344, 1356
HpyF10VI GCNNNNNNNGC 7 cut(s) 170, 446, 1118, 1127, 1316, 1397, 1400
HpyF3I CTNAG 4 cut(s) 486, 813, 885, 1094
HpySE526I ACGT 2 cut(s) 1344, 1356
Hsp92II CATG 7 cut(s) 1102, 1107, 1167, 1273, 1283, 1298, 1437
HspAI GCGC 1 cut(s) 1110
Kpn2I TCCGGA 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 1291
Kzo9I GATC 6 cut(s) 157, 178, 822, 947, 1291, 1487
LmnI GCTCC 2 cut(s) 287, 1560
Lsp1109I GCAGC 8 cut(s) 157, 476, 1108, 1403, 1412, 1425, 1427, 1505
LweI GCATC 2 cut(s) 1144, 1403
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 6 cut(s) 26, 767, 945, 1133, 1169, 1445
MaeII ACGT 2 cut(s) 1344, 1356
MaeIII GTNAC 5 cut(s) 264, 512, 1057, 1321, 1597
MalI GATC 6 cut(s) 159, 180, 824, 949, 1293, 1489
MboI GATC 6 cut(s) 157, 178, 822, 947, 1291, 1487
MboII GAAGA 2 cut(s) 1192, 1438
MfeI CAATTG 3 cut(s) 33, 90, 174
MhlI GDGCHC 1 cut(s) 1460
MlyI GAGTC 6 cut(s) 153, 318, 727, 769, 863, 995
MroI TCCGGA 1 cut(s) 154
MseI TTAA 3 cut(s) 344, 1193, 1406
MslI CAYNNNNRTG 1 cut(s) 1067
MspA1I CMGCKG 2 cut(s) 812, 1418
MspI CCGG 3 cut(s) 71, 155, 1467
MspR9I CCNGG 2 cut(s) 494, 1468
MunI CAATTG 3 cut(s) 33, 90, 174
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 1 cut(s) 494
MvnI CGCG 1 cut(s) 1112
MwoI GCNNNNNNNGC 7 cut(s) 170, 446, 1118, 1127, 1316, 1397, 1400
NciI CCSGG 1 cut(s) 1468
NdeII GATC 6 cut(s) 157, 178, 822, 947, 1291, 1487
NlaIII CATG 7 cut(s) 1102, 1107, 1167, 1273, 1283, 1298, 1437
NlaIV GGNNCC 5 cut(s) 797, 924, 1472, 1562, 1581
NmeAIII GCCGAG 1 cut(s) 1138
NmuCI GTSAC 1 cut(s) 1597
NspI RCATGY 1 cut(s) 1102
PagI TCATGA 1 cut(s) 1269
PctI GAATGC 1 cut(s) 583
PflMI CCANNNNNTGG 2 cut(s) 191, 1020
PkrI GCNGC 8 cut(s) 172, 466, 1123, 1393, 1402, 1417, 1440, 1495
PleI GAGTC 6 cut(s) 152, 317, 726, 768, 862, 994
PpsI GAGTC 6 cut(s) 152, 317, 726, 768, 862, 994
PsiI TTATAA 1 cut(s) 1217
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 5 cut(s) 797, 924, 1472, 1562, 1581
PspPI GGNCC 1 cut(s) 1090
PstI CTGCAG 2 cut(s) 106, 466
PstNI CAGNNNCTG 1 cut(s) 493
PvuII CAGCTG 1 cut(s) 812
RsaI GTAC 4 cut(s) 384, 847, 976, 1335
RsaNI GTAC 4 cut(s) 383, 846, 975, 1334
RseI CAYNNNNRTG 1 cut(s) 1067
SaqAI TTAA 3 cut(s) 344, 1193, 1406
SatI GCNGC 8 cut(s) 171, 465, 1122, 1392, 1401, 1416, 1439, 1494
Sau3AI GATC 6 cut(s) 157, 178, 822, 947, 1291, 1487
Sau96I GGNCC 1 cut(s) 1090
SchI GAGTC 6 cut(s) 153, 318, 727, 769, 863, 995
ScrFI CCNGG 2 cut(s) 494, 1468
SduI GDGCHC 1 cut(s) 1460
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 2 cut(s) 1144, 1403
SfcI CTRYAG 3 cut(s) 102, 462, 981
SinI GGWCC 1 cut(s) 1090
SmiMI CAYNNNNRTG 1 cut(s) 1067
SsiI CCGC 6 cut(s) 62, 357, 413, 1302, 1398, 1418
SspI AATATT 1 cut(s) 454
SspMI CTAG 6 cut(s) 26, 767, 945, 1133, 1169, 1445
StyD4I CCNGG 2 cut(s) 492, 1466
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 5 cut(s) 791, 800, 1222, 1366, 1462
TaiI ACGT 2 cut(s) 1347, 1359
TaqII GACCGA 1 cut(s) 389
TatI WGTACW 3 cut(s) 382, 974, 1333
Tru1I TTAA 3 cut(s) 344, 1193, 1406
Tru9I TTAA 3 cut(s) 344, 1193, 1406
TscAI CASTG 3 cut(s) 889, 1606, 1623
TseFI GTSAC 1 cut(s) 1597
TseI GCWGC 8 cut(s) 170, 464, 1121, 1391, 1400, 1415, 1438, 1493
Tsp45I GTSAC 1 cut(s) 1597
TspDTI ATGAA 2 cut(s) 1258, 1286
TspGWI ACGGA 2 cut(s) 411, 714
TspRI CASTG 3 cut(s) 889, 1606, 1623
Van91I CCANNNNNTGG 2 cut(s) 191, 1020
VpaK11BI GGWCC 1 cut(s) 1090
XagI CCTNNNNNAGG 1 cut(s) 1172
XapI RAATTY 5 cut(s) 543, 865, 1006, 1245, 1571
XceI RCATGY 1 cut(s) 1102
XcmI CCANNNNNNNNNTGG 3 cut(s) 1069, 1257, 1571
XspI CTAG 6 cut(s) 26, 767, 945, 1133, 1169, 1445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.