RchiOBHm_Chr1g0380061

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
65847425 .. 65851273
3849 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1257 bp
ATGGTGGAGTTGGAGAGGGCGCAGAATCCTTGGGTGAGTAGTAGTGACGAGCAGCAAATCGACCGAGTTGAAATCGACGGTAGAGATTTGTCCATCATGCCGGAGCTGTCGGTTTTGGACAGAGGCGACGCCGGATTCGCTAAGCGACCAGACGGCGAGAGGTGTAAAACGACGTCGGATTGGAAGCTAGGGGTTGCGGAGAGAGCTTTCTCGGCCGCCGGCGCCGCGTTTTTGTCTGCCATTATTGTTAATCCACTTGATGTGGCCAAGACGAGGTTGCAAGCTCAGGCAGCTGGTGTGCCTTACTCGCATCCGCTAAGTAATATCACGAGTCGCATGGCTTTTTTCGGCCCTACCATGCTGTTTGCGGATCTAAGGTGTTCACCATCGTGCACACGTGCTGGAATTCATGGTACTGTATCAATATGCCCACCAGATTGTTTTCAGTACAAAGGCACACTTGATGTTTTCTACAAAATCATTCGACAGGAAGGGTTTGCAAGGTTATGGAGAGGCACAAATGCAGGATTGGCACTGGCTATTCCAACAGTGGGAATCTATCTACCATGCTATGACATATTTCGCAACTGGTTAGAAGAATTCACTGCCCGTAATGCTCCCAGCACGAGTGTATATGTTCCTTTAGTTGCTGGCTCTTTGGCACGCTCATTAGCTTGTGCAACTTGCTATCCTATTGAACTTGCTAGAACTCGCATGCAGGCATTTAAAGTGATACAAAATGGTGCAAAGCCTCCTGGTGTTTTGAGGACTCTATTGGACGTTGTCTCTCATGTCAAGACCACAAGTAATGCTGAAAGCAACTTAAGAGGCTATCGTGTCCTCTGGACTGGCATGGGAGCACAACTTGCTCGTGATGTTCCCTACTCTGCAATCTGTTGGTCGACTCTCGAGCCAATCAGAAGAAGACTTCTTAATCTTGTGGGTGATGAAGCAAATGCAGTCAGTATCTTTGGGGCAAATTTTTCTGCTGGTTTTGTTGCAGGAACCATAGCGGCTGCAGCTACATGTCCATTGGATGTTGCAAAGACCCGAAGACAGATAGAGAATGATCCAGTCAGGCAAATGAAAATGACGACAAGGCAAACGCTAATGGAGGTTTGGAGGGGTGGAGGACTAAAGGGACTATTCACAGGGGTCGGTCCTCGTGTTGGTCGTGCAGGCCCTTCGGTAGGGATTGTTGTTTCCTTCTATGAAGTCGTGAAGTATGCTCTACATCAACGGTATGCAACTTCATGA

Protein Analysis

418

Amino Acids

45.56

Weight (kDa)

9.31

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 151 - 199 1.6e-09 Mitochondrial carrier protein
Mito_carr PF00153 210 - 311 5.6e-12 Mitochondrial carrier protein
Mito_carr PF00153 324 - 413 3.9e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 902
AccII CGCG 1 cut(s) 227
AciI CCGC 6 cut(s) 197, 216, 225, 314, 368, 1013
AclWI GGATC 2 cut(s) 378, 1064
AcoI YGGCCR 2 cut(s) 213, 264
AcsI RAATTY 3 cut(s) 405, 599, 979
AcvI CACGTG 1 cut(s) 398
AcyI GRCGYC 3 cut(s) 129, 173, 222
AfaI GTAC 2 cut(s) 415, 449
AfiI CCNNNNNNNGG 4 cut(s) 273, 551, 1169, 1190
AflII CTTAAG 1 cut(s) 823
AflIII ACRYGT 2 cut(s) 395, 1025
AgsI TTSAA 2 cut(s) 71, 698
AjnI CCWGG 1 cut(s) 754
AleI CACNNNNGTG 1 cut(s) 388
AluBI AGCT 7 cut(s) 106, 187, 206, 284, 293, 674, 1022
AluI AGCT 7 cut(s) 106, 187, 206, 284, 293, 674, 1022
Alw21I GWGCWC 2 cut(s) 395, 862
Alw26I GTCTC 1 cut(s) 790
Alw44I GTGCAC 1 cut(s) 391
AlwI GGATC 2 cut(s) 378, 1064
Ama87I CYCGRG 1 cut(s) 908
AoxI GGCC 4 cut(s) 213, 264, 349, 1180
ApaLI GTGCAC 1 cut(s) 391
ApeKI GCWGC 4 cut(s) 52, 290, 1016, 1019
ApoI RAATTY 3 cut(s) 405, 599, 979
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 2 cut(s) 22, 224
AspS9I GGNCC 3 cut(s) 350, 1160, 1181
AsuHPI GGTGA 3 cut(s) 46, 375, 956
AvaI CYCGRG 1 cut(s) 908
AvaII GGWCC 1 cut(s) 1160
BaeGI GKGCMC 1 cut(s) 395
BalI TGGCCA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 221
BauI CACGAG 4 cut(s) 328, 625, 870, 1164
BbrPI CACGTG 1 cut(s) 398
BbsI GAAGAC 2 cut(s) 931, 1060
Bbv12I GWGCWC 2 cut(s) 395, 862
BbvI GCAGC 4 cut(s) 64, 302, 1003, 1031
BccI CCATC 2 cut(s) 101, 394
BceAI ACGGC 1 cut(s) 169
BcgI CGANNNNNNTGC 2 cut(s) 1167, 1201
BciT130I CCWGG 1 cut(s) 756
BcoDI GTCTC 1 cut(s) 790
BfaI CTAG 2 cut(s) 188, 705
BfmI CTRYAG 1 cut(s) 1017
BfoI RGCGCY 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 823
BisI GCNGC 7 cut(s) 53, 216, 225, 291, 1014, 1017, 1020
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 7 cut(s) 54, 217, 226, 292, 1015, 1018, 1021
Bme1390I CCNGG 1 cut(s) 756
Bme18I GGWCC 1 cut(s) 1160
BmeT110I CYCGRG 1 cut(s) 908
BmgT120I GGNCC 3 cut(s) 350, 1160, 1181
BmiI GGNNCC 2 cut(s) 223, 1006
BmrFI CCNGG 1 cut(s) 756
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 2 cut(s) 931, 1060
Bpu10I CCTNAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 398
BsaHI GRCGYC 3 cut(s) 129, 173, 222
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 4 cut(s) 273, 551, 1169, 1190
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 4 cut(s) 540, 593, 853, 1073
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 2 cut(s) 310, 1042
BseLI CCNNNNNNNGG 4 cut(s) 273, 551, 1169, 1190
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 4 cut(s) 540, 593, 853, 1073
BseSI GKGCMC 1 cut(s) 395
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 4 cut(s) 64, 302, 1003, 1031
BseYI CCCAGC 1 cut(s) 620
BsgI GTGCAG 1 cut(s) 1197
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 2 cut(s) 64, 216
BshFI GGCC 4 cut(s) 215, 266, 351, 1182
BshNI GGYRCC 1 cut(s) 221
BsiEI CGRYCG 2 cut(s) 64, 216
BsiHKAI GWGCWC 2 cut(s) 395, 862
BsiHKCI CYCGRG 1 cut(s) 908
BsiSI CCGG 3 cut(s) 101, 132, 219
BslFI GGGAC 1 cut(s) 1155
BslI CCNNNNNNNGG 4 cut(s) 273, 551, 1169, 1190
BsmAI GTCTC 1 cut(s) 790
BsmFI GGGAC 1 cut(s) 1155
BsnI GGCC 4 cut(s) 215, 266, 351, 1182
BsoBI CYCGRG 1 cut(s) 908
Bsp1286I GDGCHC 2 cut(s) 395, 862
Bsp143I GATC 2 cut(s) 370, 1069
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 6 cut(s) 197, 216, 225, 314, 368, 1013
BspANI GGCC 4 cut(s) 215, 266, 351, 1182
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 227
BspHI TCATGA 1 cut(s) 1253
BspLI GGNNCC 2 cut(s) 223, 1006
BspMAI CTGCAG 1 cut(s) 1021
BspPI GGATC 2 cut(s) 378, 1064
BspT107I GGYRCC 1 cut(s) 221
BspTI CTTAAG 1 cut(s) 823
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 4 cut(s) 540, 593, 853, 1073
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 370, 1069
BssNI GRCGYC 3 cut(s) 129, 173, 222
BssSI CACGAG 4 cut(s) 328, 625, 870, 1164
BssT1I CCWWGG 1 cut(s) 29
Bst2BI CACGAG 4 cut(s) 328, 625, 870, 1164
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 4 cut(s) 80, 418, 550, 1242
BstACI GRCGYC 3 cut(s) 129, 173, 222
BstAFI CTTAAG 1 cut(s) 823
BstAPI GCANNNNNTGC 1 cut(s) 866
BstBAI YACGTR 1 cut(s) 398
BstC8I GCNNGC 7 cut(s) 220, 282, 652, 664, 716, 720, 1180
BstDEI CTNAG 4 cut(s) 141, 285, 317, 374
BstENI CCTNNNNNAGG 1 cut(s) 1188
BstF5I GGATG 2 cut(s) 310, 1042
BstFNI CGCG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 22, 224
BstKTI GATC 2 cut(s) 373, 1072
BstMAI GTCTC 1 cut(s) 790
BstMBI GATC 2 cut(s) 370, 1069
BstMCI CGRYCG 2 cut(s) 64, 216
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 2 cut(s) 718, 1029
BstSCI CCNGG 1 cut(s) 754
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 1 cut(s) 395
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 64, 302, 1003, 1031
BstV2I GAAGAC 2 cut(s) 931, 1060
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 4 cut(s) 215, 266, 351, 1182
BtsCI GGATG 2 cut(s) 310, 1042
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 3 cut(s) 533, 555, 603
Cac8I GCNNGC 7 cut(s) 220, 282, 652, 664, 716, 720, 1180
CciI TCATGA 1 cut(s) 1253
CfoI GCGC 2 cut(s) 22, 224
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 3 cut(s) 350, 1160, 1181
CseI GACGC 1 cut(s) 137
Csp6I GTAC 2 cut(s) 414, 448
CviQI GTAC 2 cut(s) 414, 448
DdeI CTNAG 4 cut(s) 141, 285, 317, 374
DinI GGCGCC 1 cut(s) 223
DpnI GATC 2 cut(s) 372, 1071
DpnII GATC 2 cut(s) 370, 1069
DraI TTTAAA 1 cut(s) 727
EaeI YGGCCR 2 cut(s) 213, 264
EagI CGGCCG 1 cut(s) 213
EclXI CGGCCG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 1160
Eco52I CGGCCG 1 cut(s) 213
Eco72I CACGTG 1 cut(s) 398
Eco88I CYCGRG 1 cut(s) 908
EcoNI CCTNNNNNAGG 1 cut(s) 1188
EcoO109I RGGNCCY 1 cut(s) 1181
EcoRI GAATTC 2 cut(s) 405, 599
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 29
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 1155
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 7 cut(s) 53, 216, 225, 291, 1014, 1017, 1020
FokI GGATG 2 cut(s) 297, 1049
Fsp4HI GCNGC 7 cut(s) 53, 216, 225, 291, 1014, 1017, 1020
FspBI CTAG 2 cut(s) 188, 705
GlaI GCGC 2 cut(s) 21, 223
GluI GCNGC 7 cut(s) 53, 216, 225, 291, 1014, 1017, 1020
GsaI CCCAGC 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 4 cut(s) 215, 266, 351, 1182
HapII CCGG 3 cut(s) 101, 132, 219
HgaI GACGC 1 cut(s) 137
HhaI GCGC 2 cut(s) 22, 224
Hin1I GRCGYC 3 cut(s) 129, 173, 222
Hin6I GCGC 2 cut(s) 20, 222
HinP1I GCGC 2 cut(s) 20, 222
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HinfI GANTC 6 cut(s) 25, 135, 331, 555, 769, 904
HpaII CCGG 3 cut(s) 101, 132, 219
HphI GGTGA 3 cut(s) 46, 375, 956
Hpy166II GTNNAC 3 cut(s) 383, 393, 903
Hpy188I TCNGA 2 cut(s) 178, 920
Hpy188III TCNNGA 7 cut(s) 328, 796, 844, 872, 908, 1219, 1254
Hpy8I GTNNAC 3 cut(s) 383, 393, 903
Hpy99I CGWCG 4 cut(s) 80, 131, 175, 178
HpyAV CCTTC 3 cut(s) 485, 1194, 1216
HpyCH4III ACNGT 4 cut(s) 80, 418, 550, 1242
HpyCH4IV ACGT 3 cut(s) 173, 397, 780
HpyF3I CTNAG 4 cut(s) 141, 285, 317, 374
HpySE526I ACGT 3 cut(s) 173, 397, 780
Hsp92I GRCGYC 3 cut(s) 129, 173, 222
HspAI GCGC 2 cut(s) 20, 222
KasI GGCGCC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 2 cut(s) 370, 1069
LmnI GCTCC 3 cut(s) 103, 622, 857
Lsp1109I GCAGC 4 cut(s) 64, 302, 1003, 1031
LweI GCATC 1 cut(s) 319
MaeI CTAG 2 cut(s) 188, 705
MaeII ACGT 3 cut(s) 173, 397, 780
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 372, 1071
MboI GATC 2 cut(s) 370, 1069
MboII GAAGA 4 cut(s) 608, 933, 936, 1065
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 2 cut(s) 395, 862
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 3 cut(s) 405, 599, 979
MluNI TGGCCA 1 cut(s) 266
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 3 cut(s) 340, 763, 898
MmeI TCCRAC 2 cut(s) 156, 569
Mox20I TGGCCA 1 cut(s) 266
MreI CGCCGGCG 1 cut(s) 218
MroNI GCCGGC 1 cut(s) 218
MscI TGGCCA 1 cut(s) 266
MseI TTAA 4 cut(s) 249, 726, 824, 933
MslI CAYNNNNRTG 1 cut(s) 388
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 823
MspI CCGG 3 cut(s) 101, 132, 219
MspR9I CCNGG 1 cut(s) 756
MvaI CCWGG 1 cut(s) 756
MvnI CGCG 1 cut(s) 227
NaeI GCCGGC 1 cut(s) 220
NarI GGCGCC 1 cut(s) 222
NdeII GATC 2 cut(s) 370, 1069
NgoMIV GCCGGC 1 cut(s) 218
NlaIV GGNNCC 2 cut(s) 223, 1006
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 2 cut(s) 718, 1029
OliI CACNNNNGTG 1 cut(s) 388
PaeI GCATGC 1 cut(s) 718
PaeR7I CTCGAG 1 cut(s) 908
PagI TCATGA 1 cut(s) 1253
PciI ACATGT 1 cut(s) 1025
PcsI WCGNNNNNNNCGW 1 cut(s) 1171
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 3 cut(s) 25, 135, 555
PflFI GACNNNGTC 1 cut(s) 782
PkrI GCNGC 7 cut(s) 54, 217, 226, 292, 1015, 1018, 1021
PleI GAGTC 3 cut(s) 339, 763, 898
PluTI GGCGCC 1 cut(s) 225
PmaCI CACGTG 1 cut(s) 398
PmlI CACGTG 1 cut(s) 398
PpsI GAGTC 3 cut(s) 339, 763, 898
Ppu21I YACGTR 1 cut(s) 398
PscI ACATGT 1 cut(s) 1025
Psp6I CCWGG 1 cut(s) 754
PspCI CACGTG 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 223, 1006
PspPI GGNCC 3 cut(s) 350, 1160, 1181
PstI CTGCAG 1 cut(s) 1021
PsuI RGATCY 1 cut(s) 370
PsyI GACNNNGTC 1 cut(s) 782
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 2 cut(s) 415, 449
RsaNI GTAC 2 cut(s) 414, 448
RseI CAYNNNNRTG 1 cut(s) 388
SalI GTCGAC 1 cut(s) 901
SaqAI TTAA 4 cut(s) 249, 726, 824, 933
SatI GCNGC 7 cut(s) 53, 216, 225, 291, 1014, 1017, 1020
Sau3AI GATC 2 cut(s) 370, 1069
Sau96I GGNCC 3 cut(s) 350, 1160, 1181
SchI GAGTC 3 cut(s) 340, 763, 898
ScrFI CCNGG 1 cut(s) 756
SduI GDGCHC 2 cut(s) 395, 862
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 1017
SfoI GGCGCC 1 cut(s) 223
Sfr274I CTCGAG 1 cut(s) 908
SgrAI CRCCGGYG 1 cut(s) 218
SinI GGWCC 1 cut(s) 1160
SlaI CTCGAG 1 cut(s) 908
SmiMI CAYNNNNRTG 1 cut(s) 388
SmlI CTYRAG 2 cut(s) 823, 908
SmoI CTYRAG 2 cut(s) 823, 908
SphI GCATGC 1 cut(s) 718
Sse9I AATT 3 cut(s) 405, 599, 979
SsiI CCGC 6 cut(s) 197, 216, 225, 314, 368, 1013
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 2 cut(s) 188, 705
StyD4I CCNGG 1 cut(s) 754
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 4 cut(s) 80, 418, 550, 1242
TaiI ACGT 3 cut(s) 176, 400, 783
TaqI TCGA 5 cut(s) 60, 75, 484, 902, 909
TaqII GACCGA 2 cut(s) 78, 1148
TasI AATT 3 cut(s) 405, 599, 979
TatI WGTACW 1 cut(s) 447
TauI GCSGC 3 cut(s) 218, 227, 1016
TfiI GAWTC 3 cut(s) 25, 135, 555
Tru1I TTAA 4 cut(s) 249, 726, 824, 933
Tru9I TTAA 4 cut(s) 249, 726, 824, 933
TscAI CASTG 3 cut(s) 540, 555, 610
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 4 cut(s) 52, 290, 1016, 1019
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 5 cut(s) 398, 963, 1100, 1227, 1242
TspRI CASTG 3 cut(s) 540, 555, 610
Tth111I GACNNNGTC 1 cut(s) 782
Vha464I CTTAAG 1 cut(s) 823
VneI GTGCAC 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 1160
XagI CCTNNNNNAGG 1 cut(s) 1188
XapI RAATTY 3 cut(s) 405, 599, 979
XceI RCATGY 2 cut(s) 718, 1029
XhoI CTCGAG 1 cut(s) 908
XmiI GTMKAC 1 cut(s) 902
XspI CTAG 2 cut(s) 188, 705
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.