Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Reverse (-)

66535091 .. 66539296

Gene Structure 4206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCAGAAGAAATGGGTTAGTGAACCAAGAGTAGGGTTTAAATTGTACAGAAATGAGTCTGTGCACTCTGCTTGTAGTGTAATTTGTGCTGTCAATGGAGGCCAGGGAGGGTATGTCTCTGCGTGGGTCGAGAAACCATATGAGTTTCTTCCGAATGGGAAAAGGGCTTACTTGGATGAACAAGATGTGGTCACGTTCCTCAATCCTCCTAAAGAGTTGATTCCTTTGGACTCGCTTCTTATAATCCTGCTGCATGTCTTTGGTCAGAAAAAAATTGATGATATTCCCCAGGAAAGGTGCCGTCGGCTGCTGCACTTGCTAGAGCCTAAGCTGATCTCAAGAGCTTGGGAGATACCTAGCACACGATATGAAGAACCCAAGTTGATGAACAGAAGCTCATTTCAACTGTTGTCTAATGAAGATGGTGTCTCTCTTGAATATTATAATTGCCCAACAAGTGGAGGTAACTCAAGTGCTCACTATTATACTGGTGTAGTTTCTGCAGCTCTCACAGTTTGGGGTTATAGAGTAACTCGTGATTCTGAGCAATTTTTCCTTGCAAGGATGGCAACGTATATGGACGATTTATTGGCTGTTGCTGACATCATCCGTACAACCTTGGGACCAAGGTCCATGTTAAAGATGCTACTGGATGCTAGTGGAGGCAATCCTTTTGCCTTAAGTGGACAAATTTTACTGTATTTATCTGTGTCTAGCCTCTGGCCATATGAAGCTGCTGCTGTAGCTTTTGAGGCTATACCACGAACATTGGCTCAGAACTGTGGGGTTAATGTCATTAGAACGATGACAGCGCTGCAAGGAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

30.88

Weight (kDa)

7.61

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	242, 444
AccB1I	GGYRCC	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	722
AcsI	RAATTY	1 cut(s)	690
AfaI	GTAC	2 cut(s)	47, 613
AfeI	AGCGCT	1 cut(s)	813
AfiI	CCNNNNNNNGG	3 cut(s)	32, 294, 458
AflII	CTTAAG	1 cut(s)	679
AgsI	TTSAA	2 cut(s)	404, 437
AjnI	CCWGG	2 cut(s)	102, 288
AluBI	AGCT	6 cut(s)	331, 344, 396, 506, 734, 746
AluI	AGCT	6 cut(s)	331, 344, 396, 506, 734, 746
Alw21I	GWGCWC	2 cut(s)	66, 478
Alw26I	GTCTC	2 cut(s)	121, 433
Alw44I	GTGCAC	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	813
AoxI	GGCC	2 cut(s)	100, 722
ApaLI	GTGCAC	1 cut(s)	62
ApeKI	GCWGC	7 cut(s)	250, 307, 310, 503, 734, 737, 814
ApoI	RAATTY	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	2 cut(s)	623, 630
AvaII	GGWCC	2 cut(s)	623, 630
BaeGI	GKGCMC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	724
BanI	GGYRCC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	534
Bbv12I	GWGCWC	2 cut(s)	66, 478
BbvI	GCAGC	7 cut(s)	237, 294, 297, 515, 721, 724, 801
BccI	CCATC	2 cut(s)	416, 559
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	2 cut(s)	104, 290
BcoDI	GTCTC	2 cut(s)	121, 433
BfaI	CTAG	4 cut(s)	320, 357, 657, 714
BfmI	CTRYAG	2 cut(s)	501, 741
BfoI	RGCGCY	1 cut(s)	815
BfrI	CTTAAG	1 cut(s)	679
BisI	GCNGC	7 cut(s)	251, 308, 311, 504, 735, 738, 815
BlsI	GCNGC	7 cut(s)	252, 309, 312, 505, 736, 739, 816
Bme1390I	CCNGG	2 cut(s)	104, 290
Bme18I	GGWCC	2 cut(s)	623, 630
BmgT120I	GGNCC	2 cut(s)	623, 630
BmiI	GGNNCC	2 cut(s)	299, 624
BmrFI	CCNGG	2 cut(s)	104, 290
BmsI	GCATC	2 cut(s)	633, 643
BoxI	GACNNNNGTC	1 cut(s)	628
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	322, 454
BsaJI	CCNNGG	4 cut(s)	103, 288, 618, 626
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 294, 458
Bse1I	ACTGG	2 cut(s)	493, 654
BseBI	CCWGG	2 cut(s)	104, 290
BseDI	CCNNGG	4 cut(s)	103, 288, 618, 626
BseGI	GGATG	4 cut(s)	181, 570, 606, 658
BseLI	CCNNNNNNNGG	3 cut(s)	32, 294, 458
BseMII	CTCAG	2 cut(s)	534, 788
BseNI	ACTGG	2 cut(s)	493, 654
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	7 cut(s)	237, 294, 297, 515, 721, 724, 801
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	2 cut(s)	102, 724
BshNI	GGYRCC	1 cut(s)	297
BsiHKAI	GWGCWC	2 cut(s)	66, 478
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	3 cut(s)	32, 294, 458
BsmAI	GTCTC	2 cut(s)	121, 433
BsmFI	GGGAC	1 cut(s)	636
BsnI	GGCC	2 cut(s)	102, 724
Bsp1286I	GDGCHC	2 cut(s)	66, 478
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	333
BspANI	GGCC	2 cut(s)	102, 724
BspCNI	CTCAG	2 cut(s)	535, 787
BspLI	GGNNCC	2 cut(s)	299, 624
BspMAI	CTGCAG	1 cut(s)	505
BspT107I	GGYRCC	1 cut(s)	297
BspTI	CTTAAG	1 cut(s)	679
BsrGI	TGTACA	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	493, 654
BssECI	CCNNGG	4 cut(s)	103, 288, 618, 626
BssMI	GATC	1 cut(s)	333
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	2 cut(s)	618, 626
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	104, 290
Bst4CI	ACNGT	4 cut(s)	408, 514, 699, 782
BstAFI	CTTAAG	1 cut(s)	679
BstAUI	TGTACA	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	327, 543, 774
BstF5I	GGATG	4 cut(s)	181, 570, 606, 658
BstH2I	RGCGCY	1 cut(s)	815
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	2 cut(s)	121, 433
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	4 cut(s)	316, 566, 743, 752
BstNI	CCWGG	2 cut(s)	104, 290
BstNSI	RCATGY	1 cut(s)	257
BstPAI	GACNNNNGTC	1 cut(s)	628
BstSCI	CCNGG	2 cut(s)	102, 288
BstSFI	CTRYAG	2 cut(s)	501, 741
BstSLI	GKGCMC	1 cut(s)	66
BstV1I	GCAGC	7 cut(s)	237, 294, 297, 515, 721, 724, 801
BsuRI	GGCC	2 cut(s)	102, 724
BtsCI	GGATG	4 cut(s)	181, 570, 606, 658
CfoI	GCGC	1 cut(s)	814
Cfr13I	GGNCC	2 cut(s)	623, 630
Csp6I	GTAC	2 cut(s)	46, 612
CspCI	CAANNNNNGTGG	2 cut(s)	750, 785
CviAII	CATG	2 cut(s)	254, 634
CviQI	GTAC	2 cut(s)	46, 612
DdeI	CTNAG	3 cut(s)	327, 543, 774
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
DraI	TTTAAA	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	722
Eco130I	CCWWGG	2 cut(s)	618, 626
Eco47I	GGWCC	2 cut(s)	623, 630
Eco47III	AGCGCT	1 cut(s)	813
EcoRII	CCWGG	2 cut(s)	102, 288
EcoT14I	CCWWGG	2 cut(s)	618, 626
ErhI	CCWWGG	2 cut(s)	618, 626
FaeI	CATG	2 cut(s)	257, 637
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	2 cut(s)	253, 633
FauNDI	CATATG	2 cut(s)	139, 727
Fnu4HI	GCNGC	7 cut(s)	251, 308, 311, 504, 735, 738, 815
FokI	GGATG	4 cut(s)	188, 577, 593, 665
Fsp4HI	GCNGC	7 cut(s)	251, 308, 311, 504, 735, 738, 815
FspBI	CTAG	4 cut(s)	320, 357, 657, 714
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	7 cut(s)	251, 308, 311, 504, 735, 738, 815
HaeII	RGCGCY	1 cut(s)	815
HaeIII	GGCC	2 cut(s)	102, 724
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	2 cut(s)	257, 637
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HinfI	GANTC	4 cut(s)	56, 220, 230, 539
Hpy166II	GTNNAC	3 cut(s)	23, 64, 686
Hpy188I	TCNGA	4 cut(s)	153, 267, 544, 777
Hpy188III	TCNNGA	4 cut(s)	130, 339, 434, 536
Hpy8I	GTNNAC	3 cut(s)	23, 64, 686
Hpy99I	CGWCG	1 cut(s)	306
HpyCH4III	ACNGT	4 cut(s)	408, 514, 699, 782
HpyCH4IV	ACGT	2 cut(s)	194, 572
HpyCH4V	TGCA	7 cut(s)	4, 64, 253, 313, 503, 560, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	316, 566, 743, 752
HpyF3I	CTNAG	3 cut(s)	327, 543, 774
HpySE526I	ACGT	2 cut(s)	194, 572
Hsp92II	CATG	2 cut(s)	257, 637
HspAI	GCGC	1 cut(s)	812
Kzo9I	GATC	1 cut(s)	333
LpnPI	CCDG	8 cut(s)	89, 116, 260, 275, 302, 474, 635, 706
Lsp1109I	GCAGC	7 cut(s)	237, 294, 297, 515, 721, 724, 801
LweI	GCATC	2 cut(s)	633, 643
MaeI	CTAG	4 cut(s)	320, 357, 657, 714
MaeII	ACGT	2 cut(s)	194, 572
MaeIII	GTNAC	3 cut(s)	190, 464, 529
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	4 cut(s)	19, 140, 383, 431
MhlI	GDGCHC	2 cut(s)	66, 478
MlsI	TGGCCA	1 cut(s)	724
MluCI	AATT	6 cut(s)	41, 81, 273, 445, 548, 690
MluNI	TGGCCA	1 cut(s)	724
MlyI	GAGTC	2 cut(s)	65, 224
MnlI	CCTC	8 cut(s)	92, 101, 209, 216, 455, 656, 728, 745
Mox20I	TGGCCA	1 cut(s)	724
MscI	TGGCCA	1 cut(s)	724
MseI	TTAA	4 cut(s)	39, 638, 680, 789
Msp20I	TGGCCA	1 cut(s)	724
MspCI	CTTAAG	1 cut(s)	679
MspR9I	CCNGG	2 cut(s)	104, 290
MvaI	CCWGG	2 cut(s)	104, 290
MwoI	GCNNNNNNNGC	4 cut(s)	316, 566, 743, 752
NdeI	CATATG	2 cut(s)	139, 727
NdeII	GATC	1 cut(s)	333
NlaIII	CATG	2 cut(s)	257, 637
NlaIV	GGNNCC	2 cut(s)	299, 624
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	220, 539
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	7 cut(s)	252, 309, 312, 505, 736, 739, 816
PleI	GAGTC	2 cut(s)	64, 224
PpsI	GAGTC	2 cut(s)	64, 224
PshAI	GACNNNNGTC	1 cut(s)	628
PsiI	TTATAA	2 cut(s)	242, 444
Psp6I	CCWGG	2 cut(s)	102, 288
PspGI	CCWGG	2 cut(s)	102, 288
PspN4I	GGNNCC	2 cut(s)	299, 624
PspPI	GGNCC	2 cut(s)	623, 630
PstI	CTGCAG	1 cut(s)	505
RsaI	GTAC	2 cut(s)	47, 613
RsaNI	GTAC	2 cut(s)	46, 612
SaqAI	TTAA	4 cut(s)	39, 638, 680, 789
SatI	GCNGC	7 cut(s)	251, 308, 311, 504, 735, 738, 815
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	2 cut(s)	623, 630
SchI	GAGTC	2 cut(s)	65, 224
ScrFI	CCNGG	2 cut(s)	104, 290
SduI	GDGCHC	2 cut(s)	66, 478
SfaNI	GCATC	2 cut(s)	633, 643
SfcI	CTRYAG	2 cut(s)	501, 741
SinI	GGWCC	2 cut(s)	623, 630
SmlI	CTYRAG	3 cut(s)	337, 469, 679
SmoI	CTYRAG	3 cut(s)	337, 469, 679
Sse9I	AATT	6 cut(s)	41, 81, 273, 445, 548, 690
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	4 cut(s)	320, 357, 657, 714
StyD4I	CCNGG	2 cut(s)	102, 288
StyI	CCWWGG	2 cut(s)	618, 626
TaaI	ACNGT	4 cut(s)	408, 514, 699, 782
TaiI	ACGT	2 cut(s)	197, 575
TaqI	TCGA	1 cut(s)	129
TasI	AATT	6 cut(s)	41, 81, 273, 445, 548, 690
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	220, 539
Tru1I	TTAA	4 cut(s)	39, 638, 680, 789
Tru9I	TTAA	4 cut(s)	39, 638, 680, 789
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	7 cut(s)	250, 307, 310, 503, 734, 737, 814
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	5 cut(s)	192, 384, 401, 432, 744
TspGWI	ACGGA	1 cut(s)	599
Van91I	CCANNNNNTGG	1 cut(s)	458
Vha464I	CTTAAG	1 cut(s)	679
VneI	GTGCAC	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	623, 630
XapI	RAATTY	1 cut(s)	690
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	4 cut(s)	320, 357, 657, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.