Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016429

Physical Location & Seq

Genomic Coordinates Reverse (-)

282369 .. 282761

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54397

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAGTGGAAATTGGCCTGAGGTGAAGCTGTTCCAAAATGACCAGCATCGTCTGAGAATTGTAGTCGACAGTGAGAGTGAAGTAGACCTGATGGTGCAGTCCAGGCACCTTAGAGATGTTATTATGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTTCTCAAGATAGAACATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

67

Amino Acids

7.89

Weight (kDa)

6.82

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_AIR9	PF23218	7 - 52	1.5e-22	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313151 RchiOBHm_Chr1g0313161 RchiOBHm_Chr5g0015771
rosa_multiflora	Rmu_sc0005736.1_g000001 Rmu_sc0011343.1_g000003 Rmu_sc0011998.1_g000002 Rmu_sc0014154.1_g000001
rosa_samantha	Rh1AG001200 Rh5AG044600 Rh5BG550000 Rh5CG052200 Rh5CG132700 Rh5CG572900 Rh6AG032400
rosa_wichuraiana	Rw3G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	105
AccI	GTMKAC	2 cut(s)	66, 84
AfaI	GTAC	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
AoxI	GGCC	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	34
AxyI	CCTNAGG	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	105
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	103
BclI	TGATCA	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	103
BseMII	CTCAG	3 cut(s)	9, 44, 161
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	132
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	3 cut(s)	10, 45, 160
BspLI	GGNNCC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	105
BssMI	GATC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	183
BstDEI	CTNAG	4 cut(s)	18, 53, 110, 147
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
Bsu36I	CCTNAGG	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	162
CviJI	RGCY	3 cut(s)	16, 28, 141
CviKI_1	RGCY	3 cut(s)	16, 28, 141
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	4 cut(s)	18, 53, 110, 147
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco81I	CCTNAGG	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	101
FaiI	YATR	3 cut(s)	125, 195, 200
FbaI	TGATCA	1 cut(s)	132
FblI	GTMKAC	2 cut(s)	66, 84
HaeIII	GGCC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	153
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	67, 85
Hpy188I	TCNGA	3 cut(s)	54, 137, 150
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	2 cut(s)	67, 85
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	4 cut(s)	18, 53, 110, 147
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	30, 56, 88, 101, 115
LweI	GCATC	1 cut(s)	55
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	170
MluCI	AATT	2 cut(s)	10, 57
MnlI	CCTC	2 cut(s)	13, 131
MroXI	GAANNNNTTC	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	1 cut(s)	132
NlaIV	GGNNCC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	4 cut(s)	24, 30, 90, 111
SfaNI	GCATC	1 cut(s)	55
SgeI	CNNG	7 cut(s)	29, 55, 100, 114, 115, 140, 196
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	10, 57
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	71
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	10, 57
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	153
TscAI	CASTG	1 cut(s)	76
TspRI	CASTG	1 cut(s)	76
XmiI	GTMKAC	2 cut(s)	66, 84
XmnI	GAANNNNTTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.