Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0016429

Physical Location & Seq

Genomic Coordinates Forward (+)

43725347 .. 43726002

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

GCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCAGTAGGAACTCTTGAGAGAAGAACCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACCTCCGTTTCATGTGGAGCTGTTCCGAAATGACCAGCATCGTCTGAGAATTGTAGTTGACAGTGAGAGTGAAGTAGACCTGATGGTGCAGTCCAGGCACCTTAGAGATGTTATTGTGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTTCTGAAGATAGAACATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

115

Amino Acids

13.22

Weight (kDa)

10.08

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_AIR9	PF23218	4 - 100	2.4e-54	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313151 RchiOBHm_Chr1g0313161 RchiOBHm_Chr5g0015771
rosa_multiflora	Rmu_sc0005736.1_g000001 Rmu_sc0011343.1_g000003 Rmu_sc0011998.1_g000002 Rmu_sc0014154.1_g000001
rosa_samantha	Rh1AG001200 Rh5AG044600 Rh5BG550000 Rh5CG052200 Rh5CG132700 Rh5CG572900 Rh6AG032400
rosa_wichuraiana	Rw3G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	71, 301
AjnI	CCWGG	2 cut(s)	103, 245
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	2 cut(s)	147, 172
AluI	AGCT	2 cut(s)	147, 172
AlwI	GGATC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	249
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	105, 247
BclI	TGATCA	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	105, 247
BmiI	GGNNCC	2 cut(s)	109, 251
BmrFI	CCNGG	2 cut(s)	105, 247
BmsI	GCATC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	105, 247
BseMII	CTCAG	2 cut(s)	188, 305
BsgI	GTGCAG	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	16, 276
BspCNI	CTCAG	2 cut(s)	189, 304
BspLI	GGNNCC	2 cut(s)	109, 251
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	249
BssMI	GATC	2 cut(s)	16, 276
Bst2UI	CCWGG	2 cut(s)	105, 247
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	197, 254, 291
BstKTI	GATC	2 cut(s)	19, 279
BstMBI	GATC	2 cut(s)	16, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	2 cut(s)	105, 247
BstSCI	CCNGG	2 cut(s)	103, 245
BstSFI	CTRYAG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	4 cut(s)	103, 147, 172, 285
CviKI_1	RGCY	4 cut(s)	103, 147, 172, 285
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	3 cut(s)	197, 254, 291
DpnI	GATC	2 cut(s)	18, 278
DpnII	GATC	2 cut(s)	16, 276
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	103, 245
FaeI	CATG	1 cut(s)	167
FaiI	YATR	5 cut(s)	98, 150, 165, 339, 344
FatI	CATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	297
Hpy166II	GTNNAC	2 cut(s)	211, 229
Hpy188I	TCNGA	5 cut(s)	179, 198, 281, 294, 327
Hpy188III	TCNNGA	2 cut(s)	53, 124
Hpy8I	GTNNAC	2 cut(s)	211, 229
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	41, 152, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	3 cut(s)	197, 254, 291
Hsp92II	CATG	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	16, 276
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	90, 117, 200, 232, 245, 259
LweI	GCATC	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	18, 278
MboI	GATC	2 cut(s)	16, 276
MboII	GAAGA	3 cut(s)	72, 314, 340
MluCI	AATT	2 cut(s)	135, 201
MnlI	CCTC	2 cut(s)	165, 275
MspR9I	CCNGG	2 cut(s)	105, 247
MvaI	CCWGG	2 cut(s)	105, 247
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	2 cut(s)	16, 276
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	109, 251
NmuCI	GTSAC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	297
PsiI	TTATAA	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	103, 245
PspGI	CCWGG	2 cut(s)	103, 245
PspN4I	GGNNCC	2 cut(s)	109, 251
PstI	CTGCAG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	16, 276
ScrFI	CCNGG	2 cut(s)	105, 247
SetI	ASST	6 cut(s)	96, 149, 157, 174, 234, 255
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	135, 201
StyD4I	CCNGG	2 cut(s)	103, 245
TaaI	ACNGT	1 cut(s)	215
TasI	AATT	2 cut(s)	135, 201
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	297
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	135
XmiI	GTMKAC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.