Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016429

Physical Location & Seq

Genomic Coordinates Reverse (-)

87352577 .. 87354046

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG550000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGACTATTAGTGAACTGTTGATTGTCTTTGGATTATACATTGTAAGAAGTTGGCTGAAGTACAGAAATTTACTTTTACATCTTTGTAAACATTCTAACAACTCTTTAACATATTTCCTACAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCAGTAGGAACTCTTGAGAGAAGAGCCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACCTCCGTTTCATGTGGAGCTGTTCCGAAATGACCAGCATCGTCTGAGAATTGTAGTCGACAGTGAGAGTGAAGTAGACCTGATGGTGCAGTCCAGGCACCTTAGAGATGTTATTGTGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTTCTCAAGATAGAACATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

156

Amino Acids

18.11

Weight (kDa)

10.01

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_AIR9	PF23218	45 - 141	7e-54	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313151 RchiOBHm_Chr1g0313161 RchiOBHm_Chr5g0015771
rosa_multiflora	Rmu_sc0005736.1_g000001 Rmu_sc0011343.1_g000003 Rmu_sc0011998.1_g000002 Rmu_sc0014154.1_g000001
rosa_samantha	Rh1AG001200 Rh5AG044600 Rh5BG550000 Rh5CG052200 Rh5CG132700 Rh5CG572900 Rh6AG032400
rosa_wichuraiana	Rw3G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	372
AccI	GTMKAC	2 cut(s)	333, 351
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	67, 258
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	62, 430
AgsI	TTSAA	2 cut(s)	194, 424
AjnI	CCWGG	2 cut(s)	226, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	270, 295
AluI	AGCT	2 cut(s)	270, 295
AlwI	GGATC	1 cut(s)	147
ApoI	RAATTY	2 cut(s)	67, 258
BanI	GGYRCC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	190
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	2 cut(s)	228, 370
BclI	TGATCA	1 cut(s)	399
BfmI	CTRYAG	2 cut(s)	119, 162
Bme1390I	CCNGG	2 cut(s)	228, 370
BmiI	GGNNCC	2 cut(s)	232, 374
BmrFI	CCNGG	2 cut(s)	228, 370
BmsI	GCATC	1 cut(s)	322
BpuEI	CTTGAG	2 cut(s)	197, 434
BseBI	CCWGG	2 cut(s)	228, 370
BseMII	CTCAG	2 cut(s)	311, 428
BsgI	GTGCAG	1 cut(s)	383
BshNI	GGYRCC	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	139, 399
BspCNI	CTCAG	2 cut(s)	312, 427
BspLI	GGNNCC	2 cut(s)	232, 374
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	372
BssMI	GATC	2 cut(s)	139, 399
Bst2UI	CCWGG	2 cut(s)	228, 370
Bst4CI	ACNGT	2 cut(s)	18, 338
Bst6I	CTCTTC	2 cut(s)	178, 450
BstDEI	CTNAG	3 cut(s)	320, 377, 414
BstKTI	GATC	2 cut(s)	142, 402
BstMBI	GATC	2 cut(s)	139, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	2 cut(s)	228, 370
BstSCI	CCNGG	2 cut(s)	226, 368
BstSFI	CTRYAG	2 cut(s)	119, 162
BtsIMutI	CAGTG	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	61, 429
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	6 cut(s)	55, 188, 226, 270, 295, 408
CviKI_1	RGCY	6 cut(s)	55, 188, 226, 270, 295, 408
CviQI	GTAC	2 cut(s)	61, 429
DdeI	CTNAG	3 cut(s)	320, 377, 414
DpnI	GATC	2 cut(s)	141, 401
DpnII	GATC	2 cut(s)	139, 399
Eam1104I	CTCTTC	2 cut(s)	178, 450
EarI	CTCTTC	2 cut(s)	178, 450
Eco24I	GRGCYC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	226, 368
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	1 cut(s)	290
FaiI	YATR	7 cut(s)	37, 112, 221, 273, 288, 462, 467
FatI	CATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	399
FblI	GTMKAC	2 cut(s)	333, 351
FriOI	GRGCYC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	1 cut(s)	420
Hpy166II	GTNNAC	4 cut(s)	14, 89, 334, 352
Hpy188I	TCNGA	4 cut(s)	302, 321, 404, 417
Hpy188III	TCNNGA	3 cut(s)	176, 247, 451
Hpy8I	GTNNAC	4 cut(s)	14, 89, 334, 352
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	18, 338
HpyCH4V	TGCA	3 cut(s)	164, 275, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	3 cut(s)	320, 377, 414
Hsp92II	CATG	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	139, 399
LguI	GCTCTTC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	7 cut(s)	107, 213, 240, 323, 355, 368, 382
LweI	GCATC	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	141, 401
MboI	GATC	2 cut(s)	139, 399
MboII	GAAGA	2 cut(s)	195, 437
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	3 cut(s)	67, 258, 324
MnlI	CCTC	2 cut(s)	288, 398
MseI	TTAA	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	228, 370
MvaI	CCWGG	2 cut(s)	228, 370
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeII	GATC	2 cut(s)	139, 399
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	232, 374
NmuCI	GTSAC	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	420
PsiI	TTATAA	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	226, 368
PspGI	CCWGG	2 cut(s)	226, 368
PspN4I	GGNNCC	2 cut(s)	232, 374
PstI	CTGCAG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	62, 430
RsaNI	GTAC	2 cut(s)	61, 429
SalI	GTCGAC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	139, 399
ScrFI	CCNGG	2 cut(s)	228, 370
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	6 cut(s)	219, 272, 280, 297, 357, 378
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	119, 162
SmlI	CTYRAG	2 cut(s)	176, 449
SmoI	CTYRAG	2 cut(s)	176, 449
Sse9I	AATT	3 cut(s)	67, 258, 324
StyD4I	CCNGG	2 cut(s)	226, 368
TaaI	ACNGT	2 cut(s)	18, 338
TaqI	TCGA	1 cut(s)	333
TasI	AATT	3 cut(s)	67, 258, 324
TatI	WGTACW	2 cut(s)	60, 428
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	343
XapI	RAATTY	2 cut(s)	67, 258
XmiI	GTMKAC	2 cut(s)	333, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.