RchiOBHm_Chr5g0015771

187-kDa microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016429
Physical Location & Seq
Forward (+)
10930297 .. 10935171
4875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29619

Sequence Viewer

Length: 1089 bp
ATGAAGTTTGAGGCTTGCGGCTTCCTTCACCAATACGACAAGTCGCGCATGCCGGTGTGCCGCTTCTTCCATACGTACGGCGAGTGTAGGGAGCAGGATTGCGTCTATAAGCACACCAACGAGGACATTAAAGAGTGTGTATATAGGTACAAGTTAGGTTTTTGTCCGAATGGTCCTGATTGCCGGTATAGACATGCAAAGTTAAATGTACAGCAGCTTCCGAGACTAGAGATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACAGTTGAAGTGATCCCAGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATGTCAGATATCAATGGTTCTTTTCTTCAGCAGTGGGAGATAATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTCCTACAAGATGCAATTAGAGGATGTCGGGCGCTGTCTAAAATGTGAGTGCATTGTGACTGATGTGTTTGGAAGTTCAGCTGAGCCTGCATATGCTGAAACTGGACCAATACTACCAGGTAAATTCCATTCCAAAGGGAGTTGGGGAGAATGTATGAATCCAATGTGGATGATGTCGGATACAGGCTTTGTAGCCATTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGTCACCTGTTTCAGCATCGACAGAGCCGATTGCAGTCGAGCCTGATGTTCTTAAAGAAGTGAAGCAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGTGGTAGGAACTCTTGAGAGAAGAACCCTCGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACCTCCGTTTCATGTGGAGCTGTTCCGAAATGACCAGCATCGTCTGAGAATTGTAGGAGACAGTGAGAGTGTGGTAGACCTGATGGTGCAGTCCAGACATGTTAGAGATGTTATTGTGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTCCTCAAGATAGAACATAATATGTAA

Protein Analysis

362

Amino Acids

41.28

Weight (kDa)

8.15

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_AIR9 PF23218 251 - 347 2.4e-50 AIR9 PH-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 839
Acc36I ACCTGC 1 cut(s) 406
AccI GTMKAC 1 cut(s) 969
AccII CGCG 1 cut(s) 46
AciI CCGC 2 cut(s) 18, 61
AclWI GGATC 3 cut(s) 280, 733, 765
AcsI RAATTY 3 cut(s) 536, 734, 876
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 5 cut(s) 77, 149, 210, 326, 1048
AflIII ACRYGT 1 cut(s) 991
AgsI TTSAA 3 cut(s) 281, 389, 1042
AjnI CCWGG 2 cut(s) 529, 844
AjuI GAANNNNNNNTTGG 2 cut(s) 845, 877
AluBI AGCT 6 cut(s) 217, 310, 494, 715, 888, 913
AluI AGCT 6 cut(s) 217, 310, 494, 715, 888, 913
Alw26I GTCTC 2 cut(s) 217, 945
AlwI GGATC 3 cut(s) 280, 733, 765
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 3 cut(s) 536, 734, 876
AspLEI GCGC 2 cut(s) 48, 447
AspS9I GGNCC 2 cut(s) 173, 518
AsuHPI GGTGA 3 cut(s) 20, 275, 639
AvaII GGWCC 2 cut(s) 173, 518
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
BbvI GCAGC 1 cut(s) 226
BccI CCATC 2 cut(s) 626, 970
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 531, 846
BciVI GTATCC 1 cut(s) 586
BclI TGATCA 1 cut(s) 1017
BcoDI GTCTC 2 cut(s) 217, 945
BfaI CTAG 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 448
BfuAI ACCTGC 1 cut(s) 406
BfuI GTATCC 1 cut(s) 586
BisI GCNGC 3 cut(s) 19, 61, 215
BlpI GCTNAGC 2 cut(s) 402, 495
BlsI GCNGC 3 cut(s) 20, 62, 216
Bme1390I CCNGG 2 cut(s) 531, 846
Bme18I GGWCC 2 cut(s) 173, 518
BmgT120I GGNCC 2 cut(s) 173, 518
BmiI GGNNCC 1 cut(s) 850
BmrFI CCNGG 2 cut(s) 531, 846
BmsI GCATC 4 cut(s) 222, 414, 668, 940
BplI GAGNNNNNCTC 2 cut(s) 286, 318
Bpu1102I GCTNAGC 2 cut(s) 402, 495
BpuEI CTTGAG 2 cut(s) 815, 1052
BsaAI YACGTR 1 cut(s) 75
Bse118I RCCGGY 2 cut(s) 52, 183
Bse1I ACTGG 2 cut(s) 250, 520
BseBI CCWGG 2 cut(s) 531, 846
BseGI GGATG 3 cut(s) 442, 588, 637
BseMII CTCAG 4 cut(s) 416, 486, 929, 1046
BseNI ACTGG 2 cut(s) 250, 520
BseRI GAGGAG 1 cut(s) 1055
BseXI GCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 1001
Bsh1236I CGCG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 53, 184
BsiWI CGTACG 1 cut(s) 75
BsmAI GTCTC 2 cut(s) 217, 945
Bsp1407I TGTACA 1 cut(s) 208
Bsp143I GATC 5 cut(s) 285, 718, 725, 757, 1017
Bsp1720I GCTNAGC 2 cut(s) 402, 495
BspACI CCGC 2 cut(s) 18, 61
BspCNI CTCAG 4 cut(s) 415, 487, 930, 1045
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 850
BspMI ACCTGC 1 cut(s) 406
BspPI GGATC 3 cut(s) 280, 733, 765
BsrFI RCCGGY 2 cut(s) 52, 183
BsrGI TGTACA 1 cut(s) 208
BsrI ACTGG 2 cut(s) 250, 520
BssAI RCCGGY 2 cut(s) 52, 183
BssMI GATC 5 cut(s) 285, 718, 725, 757, 1017
Bst2UI CCWGG 2 cut(s) 531, 846
Bst4CI ACNGT 3 cut(s) 277, 781, 956
BstAUI TGTACA 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 4 cut(s) 16, 50, 237, 501
BstDEI CTNAG 4 cut(s) 402, 495, 938, 1032
BstEII GGTNACC 1 cut(s) 645
BstF5I GGATG 3 cut(s) 442, 588, 637
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 448
BstHHI GCGC 2 cut(s) 48, 447
BstKTI GATC 5 cut(s) 288, 721, 728, 760, 1020
BstMAI GTCTC 2 cut(s) 217, 945
BstMBI GATC 5 cut(s) 285, 718, 725, 757, 1017
BstMWI GCNNNNNNNGC 2 cut(s) 316, 500
BstNI CCWGG 2 cut(s) 531, 846
BstNSI RCATGY 3 cut(s) 52, 197, 995
BstPI GGTNACC 1 cut(s) 645
BstSCI CCNGG 2 cut(s) 529, 844
BstSNI TACGTA 1 cut(s) 75
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 226
BsuI GTATCC 1 cut(s) 586
BtsCI GGATG 3 cut(s) 442, 588, 637
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 4 cut(s) 243, 372, 735, 961
BveI ACCTGC 1 cut(s) 406
Cac8I GCNNGC 4 cut(s) 16, 50, 237, 501
CfoI GCGC 2 cut(s) 48, 447
Cfr10I RCCGGY 2 cut(s) 52, 183
Cfr13I GGNCC 2 cut(s) 173, 518
CseI GACGC 1 cut(s) 91
CsiI ACCWGGT 1 cut(s) 529
Csp6I GTAC 5 cut(s) 76, 148, 209, 325, 1047
CviAII CATG 4 cut(s) 49, 194, 905, 992
CviQI GTAC 5 cut(s) 76, 148, 209, 325, 1047
DdeI CTNAG 4 cut(s) 402, 495, 938, 1032
DpnI GATC 5 cut(s) 287, 720, 727, 759, 1019
DpnII GATC 5 cut(s) 285, 718, 725, 757, 1017
Eco105I TACGTA 1 cut(s) 75
Eco32I GATATC 1 cut(s) 344
Eco47I GGWCC 2 cut(s) 173, 518
Eco57I CTGAAG 1 cut(s) 345
Eco91I GGTNACC 1 cut(s) 645
EcoO65I GGTNACC 1 cut(s) 645
EcoRII CCWGG 2 cut(s) 529, 844
EcoRV GATATC 1 cut(s) 344
FaeI CATG 4 cut(s) 52, 197, 908, 995
FatI CATG 4 cut(s) 48, 193, 904, 991
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 1017
FblI GTMKAC 1 cut(s) 969
Fnu4HI GCNGC 3 cut(s) 19, 61, 215
FokI GGATG 3 cut(s) 449, 595, 644
Fsp4HI GCNGC 3 cut(s) 19, 61, 215
FspBI CTAG 1 cut(s) 227
GlaI GCGC 2 cut(s) 47, 446
GluI GCNGC 3 cut(s) 19, 61, 215
HaeII RGCGCY 1 cut(s) 448
HapII CCGG 2 cut(s) 53, 184
HgaI GACGC 1 cut(s) 91
HhaI GCGC 2 cut(s) 48, 447
Hin1II CATG 4 cut(s) 52, 197, 908, 995
Hin6I GCGC 2 cut(s) 46, 445
HinP1I GCGC 2 cut(s) 46, 445
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 3 cut(s) 301, 571, 1038
HpaII CCGG 2 cut(s) 53, 184
HphI GGTGA 3 cut(s) 20, 275, 639
Hpy166II GTNNAC 1 cut(s) 970
Hpy188I TCNGA 9 cut(s) 168, 222, 341, 592, 725, 920, 939, 1022, 1035
Hpy188III TCNNGA 5 cut(s) 176, 794, 865, 987, 1069
Hpy8I GTNNAC 1 cut(s) 970
HpyAV CCTTC 3 cut(s) 35, 254, 826
HpyCH4III ACNGT 3 cut(s) 277, 781, 956
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 7 cut(s) 197, 427, 465, 503, 677, 893, 982
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 500
HpyF3I CTNAG 4 cut(s) 402, 495, 938, 1032
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 4 cut(s) 52, 197, 908, 995
HspAI GCGC 2 cut(s) 46, 445
Ksp22I TGATCA 1 cut(s) 1017
Kzo9I GATC 5 cut(s) 285, 718, 725, 757, 1017
LmnI GCTCC 3 cut(s) 91, 419, 910
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 4 cut(s) 222, 414, 668, 940
MabI ACCWGGT 1 cut(s) 529
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 3 cut(s) 469, 645, 749
MalI GATC 5 cut(s) 287, 720, 727, 759, 1019
MboI GATC 5 cut(s) 285, 718, 725, 757, 1017
MboII GAAGA 3 cut(s) 58, 351, 813
MluCI AATT 5 cut(s) 428, 536, 734, 876, 942
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 1 cut(s) 570
MseI TTAA 3 cut(s) 129, 203, 696
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 2 cut(s) 53, 184
MspR9I CCNGG 2 cut(s) 531, 846
MvaI CCWGG 2 cut(s) 531, 846
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 316, 500
NdeI CATATG 1 cut(s) 505
NdeII GATC 5 cut(s) 285, 718, 725, 757, 1017
NlaIII CATG 4 cut(s) 52, 197, 908, 995
NlaIV GGNNCC 1 cut(s) 850
NmuCI GTSAC 3 cut(s) 469, 645, 749
NspI RCATGY 3 cut(s) 52, 197, 995
PaeI GCATGC 1 cut(s) 52
PciI ACATGT 1 cut(s) 991
PcsI WCGNNNNNNNCGW 1 cut(s) 668
PfeI GAWTC 2 cut(s) 571, 1038
Pfl23II CGTACG 1 cut(s) 75
PkrI GCNGC 3 cut(s) 20, 62, 216
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Ppu21I YACGTR 1 cut(s) 75
PscI ACATGT 1 cut(s) 991
PsiI TTATAA 1 cut(s) 839
Psp6I CCWGG 2 cut(s) 529, 844
PspEI GGTNACC 1 cut(s) 645
PspGI CCWGG 2 cut(s) 529, 844
PspLI CGTACG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 850
PspPI GGNCC 2 cut(s) 173, 518
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 5 cut(s) 77, 149, 210, 326, 1048
RsaNI GTAC 5 cut(s) 76, 148, 209, 325, 1047
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 3 cut(s) 129, 203, 696
SatI GCNGC 3 cut(s) 19, 61, 215
Sau3AI GATC 5 cut(s) 285, 718, 725, 757, 1017
Sau96I GGNCC 2 cut(s) 173, 518
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 2 cut(s) 531, 846
SexAI ACCWGGT 1 cut(s) 529
SfaNI GCATC 4 cut(s) 222, 414, 668, 940
SinI GGWCC 2 cut(s) 173, 518
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 794, 1067
SmoI CTYRAG 2 cut(s) 794, 1067
SnaBI TACGTA 1 cut(s) 75
SphI GCATGC 1 cut(s) 52
Sse9I AATT 5 cut(s) 428, 536, 734, 876, 942
SsiI CCGC 2 cut(s) 18, 61
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 529, 844
TaaI ACNGT 3 cut(s) 277, 781, 956
TaiI ACGT 1 cut(s) 77
TaqI TCGA 4 cut(s) 258, 662, 681, 810
TasI AATT 5 cut(s) 428, 536, 734, 876, 942
TatI WGTACW 3 cut(s) 208, 324, 1046
TauI GCSGC 2 cut(s) 21, 63
TfiI GAWTC 2 cut(s) 571, 1038
Tru1I TTAA 3 cut(s) 129, 203, 696
Tru9I TTAA 3 cut(s) 129, 203, 696
TscAI CASTG 4 cut(s) 250, 372, 735, 961
TseFI GTSAC 3 cut(s) 469, 645, 749
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 3 cut(s) 469, 645, 749
TspDTI ATGAA 3 cut(s) 17, 584, 893
TspGWI ACGGA 1 cut(s) 888
TspRI CASTG 4 cut(s) 250, 372, 735, 961
VpaK11BI GGWCC 2 cut(s) 173, 518
XapI RAATTY 3 cut(s) 536, 734, 876
XceI RCATGY 3 cut(s) 52, 197, 995
XmiI GTMKAC 1 cut(s) 969
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.