Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016429

Physical Location & Seq

Genomic Coordinates Reverse (-)

286910 .. 290018

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACCGTTGTTGAAGTGATCCCAGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATGTCAGATATCAATGGTTCTTTTCTTCAGCAGTGGGAGATAATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTCCTACAAGATGCGATTAGAGGACGTCGGGCGCTGTCTAAAATGTGAGTGCATTGTGACTGATGTGTTTGGAAGGTCAGCTGAGCCTGCATATGCTGAAACTGGACCAATACTACCAGGAATTCCTAGAATTGATAAGCTGGAGATCGAAGGGAGGGGTTTCCACACCAACTTATATGCTGTACGTGGCATTTATAGTGGAGGGAAGGAAGGCAAAAGTAGAATACAGTGGCTCAGATCAATGGTTGGGAGTCCTGATCTTATCTCTATACCCGGGGAGGTAGGGAGAATGTATGAATCCAATGTGGATGATGTAGGATATAGGCTTGTAGCCATTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGTCACCTGTTTCAGCATCGACAAAGCCGATTGCAGTCGAGCCTGATGTTCTTAAAGAAGTGAAGCAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCAGTAGGAACTCTTGAGAGAAGAGCCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAACTATGCACCTCCGTTTCATGTGGAGCTGTTCCAAAATGACCAGCATCGTCTGAGAATTGTAGTCGACAGTGAGAGTGAAGTAGACCTGATGGTGCAGTCCAGGCACCTTAGAGATGTTATTATGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTTCTCAAGATAGAACATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

332

Amino Acids

37.27

Weight (kDa)

8.47

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	106 - 191	5.9e-21	AIR9 A9 domain
PH_AIR9	PF23218	221 - 317	2.1e-51	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313151 RchiOBHm_Chr1g0313161 RchiOBHm_Chr5g0015771
rosa_multiflora	Rmu_sc0005736.1_g000001 Rmu_sc0011343.1_g000003 Rmu_sc0011998.1_g000002 Rmu_sc0014154.1_g000001
rosa_samantha	Rh1AG001200 Rh5AG044600 Rh5BG550000 Rh5CG052200 Rh5CG132700 Rh5CG572900 Rh6AG032400
rosa_wichuraiana	Rw3G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AatII	GACGTC	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	900
AccI	GTMKAC	2 cut(s)	861, 879
AclWI	GGATC	3 cut(s)	52, 643, 675
AcsI	RAATTY	3 cut(s)	306, 644, 786
AcuI	CTGAAG	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	3 cut(s)	98, 369, 958
AgsI	TTSAA	4 cut(s)	53, 161, 722, 952
AjnI	CCWGG	3 cut(s)	301, 754, 896
AjuI	GAANNNNNNNTTGG	2 cut(s)	755, 787
AluBI	AGCT	5 cut(s)	82, 266, 325, 625, 823
AluI	AGCT	5 cut(s)	82, 266, 325, 625, 823
AlwI	GGATC	3 cut(s)	52, 643, 675
Ama87I	CYCGRG	1 cut(s)	458
ApoI	RAATTY	3 cut(s)	306, 644, 786
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	2 cut(s)	459, 460
AsuHPI	GGTGA	2 cut(s)	44, 549
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	900
BanII	GRGCYC	1 cut(s)	718
BccI	CCATC	2 cut(s)	536, 880
BciT130I	CCWGG	3 cut(s)	303, 756, 898
BclI	TGATCA	1 cut(s)	927
BcnI	CCSGG	2 cut(s)	459, 460
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	220
BfuAI	ACCTGC	1 cut(s)	178
BlpI	GCTNAGC	2 cut(s)	174, 267
Bme1390I	CCNGG	5 cut(s)	303, 459, 460, 756, 898
Bme18I	GGWCC	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	760, 902
BmrFI	CCNGG	5 cut(s)	303, 459, 460, 756, 898
BmsI	GCATC	3 cut(s)	186, 578, 850
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpmI	CTGGAG	1 cut(s)	347
Bpu1102I	GCTNAGC	2 cut(s)	174, 267
BpuEI	CTTGAG	2 cut(s)	725, 962
BpuMI	CCSGG	2 cut(s)	459, 460
BsaAI	YACGTR	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	458, 459
Bse1I	ACTGG	2 cut(s)	19, 292
BseBI	CCWGG	3 cut(s)	303, 756, 898
BseDI	CCNNGG	2 cut(s)	458, 459
BseGI	GGATG	2 cut(s)	499, 547
BseMII	CTCAG	5 cut(s)	188, 258, 433, 839, 956
BseNI	ACTGG	2 cut(s)	19, 292
BsgI	GTGCAG	1 cut(s)	911
BshNI	GGYRCC	1 cut(s)	900
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	459
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp143I	GATC	8 cut(s)	57, 330, 422, 442, 628, 635, 667, 927
Bsp1720I	GCTNAGC	2 cut(s)	174, 267
BspCNI	CTCAG	5 cut(s)	187, 259, 432, 840, 955
BspLI	GGNNCC	2 cut(s)	760, 902
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	3 cut(s)	52, 643, 675
BspQI	GCTCTTC	1 cut(s)	706
BspT107I	GGYRCC	1 cut(s)	900
BsrI	ACTGG	2 cut(s)	19, 292
BssECI	CCNNGG	2 cut(s)	458, 459
BssMI	GATC	8 cut(s)	57, 330, 422, 442, 628, 635, 667, 927
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	3 cut(s)	303, 756, 898
Bst4CI	ACNGT	3 cut(s)	46, 414, 866
Bst6I	CTCTTC	2 cut(s)	706, 978
BstACI	GRCGYC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	6, 273
BstDEI	CTNAG	6 cut(s)	174, 267, 419, 848, 905, 942
BstEII	GGTNACC	1 cut(s)	555
BstF5I	GGATG	2 cut(s)	499, 547
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	8 cut(s)	60, 333, 425, 445, 631, 638, 670, 930
BstMBI	GATC	8 cut(s)	57, 330, 422, 442, 628, 635, 667, 927
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 272, 898
BstNI	CCWGG	3 cut(s)	303, 756, 898
BstPI	GGTNACC	1 cut(s)	555
BstSCI	CCNGG	5 cut(s)	301, 457, 458, 754, 896
BstSFI	CTRYAG	1 cut(s)	690
BtsCI	GGATG	2 cut(s)	499, 547
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	5 cut(s)	12, 144, 419, 645, 871
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	6, 273
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	290
Cfr9I	CCCGGG	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	97, 368, 957
CviAII	CATG	1 cut(s)	815
CviQI	GTAC	3 cut(s)	97, 368, 957
DdeI	CTNAG	6 cut(s)	174, 267, 419, 848, 905, 942
DpnI	GATC	8 cut(s)	59, 332, 424, 444, 630, 637, 669, 929
DpnII	GATC	8 cut(s)	57, 330, 422, 442, 628, 635, 667, 927
Eam1104I	CTCTTC	2 cut(s)	706, 978
EarI	CTCTTC	2 cut(s)	706, 978
Eco24I	GRGCYC	1 cut(s)	718
Eco32I	GATATC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	458
Eco91I	GGTNACC	1 cut(s)	555
EcoO65I	GGTNACC	1 cut(s)	555
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	301, 754, 896
EcoRV	GATATC	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	718
FaeI	CATG	1 cut(s)	818
FatI	CATG	1 cut(s)	814
FauNDI	CATATG	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	927
FblI	GTMKAC	2 cut(s)	861, 879
FokI	GGATG	2 cut(s)	506, 554
FriOI	GRGCYC	1 cut(s)	718
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	220
HapII	CCGG	1 cut(s)	459
HhaI	GCGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	818
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	4 cut(s)	73, 436, 482, 948
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	2 cut(s)	44, 549
Hpy166II	GTNNAC	2 cut(s)	862, 880
Hpy188I	TCNGA	6 cut(s)	113, 422, 635, 849, 932, 945
Hpy188III	TCNNGA	4 cut(s)	440, 704, 775, 979
Hpy8I	GTNNAC	2 cut(s)	862, 880
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	6 cut(s)	23, 252, 329, 385, 389, 736
HpyCH4III	ACNGT	3 cut(s)	46, 414, 866
HpyCH4IV	ACGT	2 cut(s)	210, 370
HpyCH4V	TGCA	6 cut(s)	237, 275, 587, 692, 803, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 272, 898
HpyF3I	CTNAG	6 cut(s)	174, 267, 419, 848, 905, 942
HpySE526I	ACGT	2 cut(s)	210, 370
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	818
HspAI	GCGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	927
Kzo9I	GATC	8 cut(s)	57, 330, 422, 442, 628, 635, 667, 927
LguI	GCTCTTC	1 cut(s)	706
LmnI	GCTCC	2 cut(s)	191, 820
LweI	GCATC	3 cut(s)	186, 578, 850
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	210, 370
MaeIII	GTNAC	3 cut(s)	241, 555, 659
MalI	GATC	8 cut(s)	59, 332, 424, 444, 630, 637, 669, 929
MboI	GATC	8 cut(s)	57, 330, 422, 442, 628, 635, 667, 927
MboII	GAAGA	3 cut(s)	123, 723, 965
MhlI	GDGCHC	1 cut(s)	718
MluCI	AATT	5 cut(s)	306, 315, 644, 786, 852
MlyI	GAGTC	2 cut(s)	67, 445
MnlI	CCTC	9 cut(s)	199, 333, 380, 457, 532, 544, 643, 816, 926
MseI	TTAA	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	5 cut(s)	303, 459, 460, 756, 898
MvaI	CCWGG	3 cut(s)	303, 756, 898
MwoI	GCNNNNNNNGC	3 cut(s)	88, 272, 898
NciI	CCSGG	2 cut(s)	459, 460
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	8 cut(s)	57, 330, 422, 442, 628, 635, 667, 927
NlaIII	CATG	1 cut(s)	818
NlaIV	GGNNCC	2 cut(s)	760, 902
NmuCI	GTSAC	3 cut(s)	241, 555, 659
PciSI	GCTCTTC	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	578
PfeI	GAWTC	2 cut(s)	482, 948
PleI	GAGTC	2 cut(s)	67, 444
PpsI	GAGTC	2 cut(s)	67, 444
Ppu21I	YACGTR	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	301, 754, 896
PspEI	GGTNACC	1 cut(s)	555
PspGI	CCWGG	3 cut(s)	301, 754, 896
PspN4I	GGNNCC	2 cut(s)	760, 902
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	3 cut(s)	98, 369, 958
RsaNI	GTAC	3 cut(s)	97, 368, 957
SalI	GTCGAC	1 cut(s)	860
SapI	GCTCTTC	1 cut(s)	706
SaqAI	TTAA	1 cut(s)	606
Sau3AI	GATC	8 cut(s)	57, 330, 422, 442, 628, 635, 667, 927
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	2 cut(s)	67, 445
ScrFI	CCNGG	5 cut(s)	303, 459, 460, 756, 898
SduI	GDGCHC	1 cut(s)	718
SfaNI	GCATC	3 cut(s)	186, 578, 850
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	1 cut(s)	290
SmaI	CCCGGG	1 cut(s)	460
SmlI	CTYRAG	2 cut(s)	704, 977
SmoI	CTYRAG	2 cut(s)	704, 977
Sse9I	AATT	5 cut(s)	306, 315, 644, 786, 852
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	5 cut(s)	301, 457, 458, 754, 896
TaaI	ACNGT	3 cut(s)	46, 414, 866
TaiI	ACGT	2 cut(s)	213, 373
TaqI	TCGA	5 cut(s)	27, 333, 572, 591, 861
TasI	AATT	5 cut(s)	306, 315, 644, 786, 852
TatI	WGTACW	2 cut(s)	96, 956
TfiI	GAWTC	2 cut(s)	482, 948
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	5 cut(s)	19, 144, 419, 645, 871
TseFI	GTSAC	3 cut(s)	241, 555, 659
Tsp45I	GTSAC	3 cut(s)	241, 555, 659
TspDTI	ATGAA	2 cut(s)	495, 803
TspGWI	ACGGA	1 cut(s)	798
TspMI	CCCGGG	1 cut(s)	458
TspRI	CASTG	5 cut(s)	19, 144, 419, 645, 871
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	3 cut(s)	306, 644, 786
XmaI	CCCGGG	1 cut(s)	458
XmiI	GTMKAC	2 cut(s)	861, 879
XspI	CTAG	1 cut(s)	312
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.