Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016429

Physical Location & Seq

Genomic Coordinates Reverse (-)

3734476 .. 3746359

Gene Structure 11884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG052200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATGAGAACGGACCCAGCAGTATATGTGTTTTCCAATATCAATAATAACAAGTCCGACATATCGCAGAAAGAAGATGCCAATTCGATCCATCTAATTCTTTTACCAAAAGCTGGAAATTTCTCATTCTCAACCTATATAATTGGAATTCCTAGAATTGATAAGCTGGAGATCGAAGGGAGGGGTTTCCACACCAACTTATATGCTGTACGTGGCATTTATAGTGGAGGGAAGGAAGGCAAAAGTAGAATACAGTGGCTCAGATCAATGGTTGGGAGTCCTGATCTTATCTCTATACCCGGGGAGGTAGGGAGAATGTATGAATCCAATGTGGATGATGTAGGATATAGGCTTGGATTATACATTGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCAGTAGGAACTCTTGAGAAAAGAACCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACTTCCTTTTCATGTAAGATTGGTGTTACTATACAATTATACAGGCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

189

Amino Acids

21.15

Weight (kDa)

9.63

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	53 - 120	2.7e-11	AIR9 A9 domain
PH_AIR9	PF23218	126 - 180	4.4e-22	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313151 RchiOBHm_Chr1g0313161 RchiOBHm_Chr5g0015771
rosa_multiflora	Rmu_sc0005736.1_g000001 Rmu_sc0011343.1_g000003 Rmu_sc0011998.1_g000002 Rmu_sc0014154.1_g000001
rosa_samantha	Rh1AG001200 Rh5AG044600 Rh5BG550000 Rh5CG052200 Rh5CG132700 Rh5CG572900 Rh6AG032400
rosa_wichuraiana	Rw3G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccB7I	CCANNNNNTGG	1 cut(s)	113
AclWI	GGATC	2 cut(s)	82, 390
AcsI	RAATTY	3 cut(s)	118, 147, 501
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	469
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	3 cut(s)	113, 166, 513
AluI	AGCT	3 cut(s)	113, 166, 513
AlwI	GGATC	2 cut(s)	82, 390
Ama87I	CYCGRG	1 cut(s)	299
ApoI	RAATTY	3 cut(s)	118, 147, 501
AspS9I	GGNCC	1 cut(s)	13
AsuC2I	CCSGG	2 cut(s)	300, 301
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	13
BccI	CCATC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	471
BcnI	CCSGG	2 cut(s)	300, 301
BfaI	CTAG	2 cut(s)	153, 568
BfmI	CTRYAG	1 cut(s)	405
Bme1390I	CCNGG	3 cut(s)	300, 301, 471
Bme18I	GGWCC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	3 cut(s)	15, 475, 565
BmrFI	CCNGG	3 cut(s)	300, 301, 471
BmsI	GCATC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	300, 301
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	299, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	299, 300
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	299
Bsp143I	GATC	5 cut(s)	87, 171, 263, 283, 382
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	15, 475, 565
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	2 cut(s)	82, 390
BsrDI	GCAATG	1 cut(s)	363
BssECI	CCNNGG	2 cut(s)	299, 300
BssMI	GATC	5 cut(s)	87, 171, 263, 283, 382
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	5 cut(s)	90, 174, 266, 286, 385
BstMBI	GATC	5 cut(s)	87, 171, 263, 283, 382
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	3 cut(s)	298, 299, 469
BstSFI	CTRYAG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	13
Cfr9I	CCCGGG	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	7 cut(s)	113, 166, 259, 352, 469, 513, 564
CviKI_1	RGCY	7 cut(s)	113, 166, 259, 352, 469, 513, 564
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	5 cut(s)	89, 173, 265, 285, 384
DpnII	GATC	5 cut(s)	87, 171, 263, 283, 382
Eco47I	GGWCC	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	469
FaeI	CATG	1 cut(s)	533
FatI	CATG	1 cut(s)	529
FokI	GGATG	1 cut(s)	347
FspBI	CTAG	2 cut(s)	153, 568
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	188
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	1 cut(s)	533
HinfI	GANTC	2 cut(s)	277, 323
HpaII	CCGG	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	58, 263
Hpy188III	TCNNGA	3 cut(s)	281, 419, 490
HpyAV	CCTTC	4 cut(s)	170, 226, 230, 451
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	3 cut(s)	368, 407, 518
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	533
Kzo9I	GATC	5 cut(s)	87, 171, 263, 283, 382
LmnI	GCTCC	1 cut(s)	569
LpnPI	CCDG	8 cut(s)	30, 99, 152, 294, 313, 456, 483, 546
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	153, 568
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	374, 543
MalI	GATC	5 cut(s)	89, 173, 265, 285, 384
MboI	GATC	5 cut(s)	87, 171, 263, 283, 382
MboII	GAAGA	1 cut(s)	86
MluCI	AATT	8 cut(s)	82, 96, 118, 141, 147, 156, 501, 553
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	3 cut(s)	174, 221, 298
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	3 cut(s)	300, 301, 471
MvaI	CCWGG	1 cut(s)	471
NciI	CCSGG	2 cut(s)	300, 301
NdeII	GATC	5 cut(s)	87, 171, 263, 283, 382
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	3 cut(s)	15, 475, 565
NmuCI	GTSAC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	323
PflMI	CCANNNNNTGG	1 cut(s)	113
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
Ppu21I	YACGTR	1 cut(s)	212
PsiI	TTATAA	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	469
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	3 cut(s)	15, 475, 565
PspPI	GGNCC	1 cut(s)	13
PstI	CTGCAG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
Sau3AI	GATC	5 cut(s)	87, 171, 263, 283, 382
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	3 cut(s)	300, 301, 471
SetI	ASST	7 cut(s)	115, 137, 168, 214, 309, 462, 515
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	13
SmaI	CCCGGG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	8 cut(s)	82, 96, 118, 141, 147, 156, 501, 553
SspMI	CTAG	2 cut(s)	153, 568
StyD4I	CCNGG	3 cut(s)	298, 299, 469
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	86, 174
TasI	AATT	8 cut(s)	82, 96, 118, 141, 147, 156, 501, 553
TfiI	GAWTC	1 cut(s)	323
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	336, 518
TspGWI	ACGGA	1 cut(s)	26
TspMI	CCCGGG	1 cut(s)	299
TspRI	CASTG	1 cut(s)	260
Van91I	CCANNNNNTGG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	3 cut(s)	118, 147, 501
XmaI	CCCGGG	1 cut(s)	299
XspI	CTAG	2 cut(s)	153, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.