Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0016429

Physical Location & Seq

Genomic Coordinates Reverse (-)

283944 .. 287768

Gene Structure 3825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG001200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCGATTAGAGGACGTCGGGCGCTGTCTAAAATGTGAGTGCATTGTGACTGATGTGTTTGGAAGGTCAGCTGAGCCTGCATATGCTGAAACTGGACCAATACTACCAGGAATTCCTAGAATTGATAAGCTGGAGATCGAAGGGAGGGGTTTCCACACCAACTTATATGCTGTACGTGGCATTTATAGTGGAGGGAAGGAAGGCAAAAGTAGAATACAGTGGCTCAGATCAATGGTTGGGAGTCCTGATCTTATCTCTATACCCGGGGAGGTAGGGAGAATGTATGAATCCAATGTGGATGATGTAGGATATAGGCTTGTAGCCATTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGTCACCTGTTTCAGCATCGACAAAGCCGATTGCAGTCGAGCCTGATGTTCTTAAAGAAGTGAAGCAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCAGTAGGAACTCTTGAGAGAAGAGCCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAACTATGCACCTCCGTTTCATGTGGAGCTGTTCCAAAATGACCAGCATCGTCTGAGAATTGTAGTCGACAGTGAGAGTGAAGTAGACCTGATGGTGCAGTCCAGGCACCTTAGAGATGTTATTATGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTTCTCAAGATAGAACATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

267

Amino Acids

29.84

Weight (kDa)

8.59

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	41 - 126	3.9e-21	AIR9 A9 domain
PH_AIR9	PF23218	156 - 252	1.3e-51	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313151 RchiOBHm_Chr1g0313161 RchiOBHm_Chr5g0015771
rosa_multiflora	Rmu_sc0005736.1_g000001 Rmu_sc0011343.1_g000003 Rmu_sc0011998.1_g000002 Rmu_sc0014154.1_g000001
rosa_samantha	Rh1AG001200 Rh5AG044600 Rh5BG550000 Rh5CG052200 Rh5CG132700 Rh5CG572900 Rh6AG032400
rosa_wichuraiana	Rw3G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AatII	GACGTC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	705
AccI	GTMKAC	2 cut(s)	666, 684
AclWI	GGATC	2 cut(s)	448, 480
AcsI	RAATTY	3 cut(s)	111, 449, 591
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	2 cut(s)	174, 763
AgsI	TTSAA	2 cut(s)	527, 757
AjnI	CCWGG	3 cut(s)	106, 559, 701
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	4 cut(s)	71, 130, 430, 628
AluI	AGCT	4 cut(s)	71, 130, 430, 628
AlwI	GGATC	2 cut(s)	448, 480
Ama87I	CYCGRG	1 cut(s)	263
ApoI	RAATTY	3 cut(s)	111, 449, 591
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	2 cut(s)	264, 265
AsuHPI	GGTGA	1 cut(s)	354
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	705
BanII	GRGCYC	1 cut(s)	523
BccI	CCATC	2 cut(s)	341, 685
BciT130I	CCWGG	3 cut(s)	108, 561, 703
BclI	TGATCA	1 cut(s)	732
BcnI	CCSGG	2 cut(s)	264, 265
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	25
BlpI	GCTNAGC	1 cut(s)	72
Bme1390I	CCNGG	5 cut(s)	108, 264, 265, 561, 703
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	565, 707
BmrFI	CCNGG	5 cut(s)	108, 264, 265, 561, 703
BmsI	GCATC	2 cut(s)	383, 655
BpmI	CTGGAG	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	530, 767
BpuMI	CCSGG	2 cut(s)	264, 265
BsaAI	YACGTR	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	263, 264
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	3 cut(s)	108, 561, 703
BseDI	CCNNGG	2 cut(s)	263, 264
BseGI	GGATG	2 cut(s)	304, 352
BseMII	CTCAG	4 cut(s)	63, 238, 644, 761
BseNI	ACTGG	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	716
BshNI	GGYRCC	1 cut(s)	705
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	264
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	7 cut(s)	135, 227, 247, 433, 440, 472, 732
Bsp1720I	GCTNAGC	1 cut(s)	72
BspCNI	CTCAG	4 cut(s)	64, 237, 645, 760
BspLI	GGNNCC	2 cut(s)	565, 707
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	2 cut(s)	448, 480
BspQI	GCTCTTC	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	263, 264
BssMI	GATC	7 cut(s)	135, 227, 247, 433, 440, 472, 732
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	3 cut(s)	108, 561, 703
Bst4CI	ACNGT	2 cut(s)	219, 671
Bst6I	CTCTTC	2 cut(s)	511, 783
BstACI	GRCGYC	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	5 cut(s)	72, 224, 653, 710, 747
BstEII	GGTNACC	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	304, 352
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	7 cut(s)	138, 230, 250, 436, 443, 475, 735
BstMBI	GATC	7 cut(s)	135, 227, 247, 433, 440, 472, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 703
BstNI	CCWGG	3 cut(s)	108, 561, 703
BstPI	GGTNACC	1 cut(s)	360
BstSCI	CCNGG	5 cut(s)	106, 262, 263, 559, 701
BstSFI	CTRYAG	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	304, 352
BtsIMutI	CAGTG	3 cut(s)	224, 450, 676
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	95
Cfr9I	CCCGGG	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	173, 762
CviAII	CATG	1 cut(s)	620
CviQI	GTAC	2 cut(s)	173, 762
DdeI	CTNAG	5 cut(s)	72, 224, 653, 710, 747
DpnI	GATC	7 cut(s)	137, 229, 249, 435, 442, 474, 734
DpnII	GATC	7 cut(s)	135, 227, 247, 433, 440, 472, 732
Eam1104I	CTCTTC	2 cut(s)	511, 783
EarI	CTCTTC	2 cut(s)	511, 783
Eco24I	GRGCYC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	360
EcoO65I	GGTNACC	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	3 cut(s)	106, 559, 701
EcoT38I	GRGCYC	1 cut(s)	523
FaeI	CATG	1 cut(s)	623
FatI	CATG	1 cut(s)	619
FauNDI	CATATG	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	732
FblI	GTMKAC	2 cut(s)	666, 684
FokI	GGATG	2 cut(s)	311, 359
FriOI	GRGCYC	1 cut(s)	523
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	25
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	623
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	3 cut(s)	241, 287, 753
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	354
Hpy166II	GTNNAC	2 cut(s)	667, 685
Hpy188I	TCNGA	5 cut(s)	227, 440, 654, 737, 750
Hpy188III	TCNNGA	4 cut(s)	245, 509, 580, 784
Hpy8I	GTNNAC	2 cut(s)	667, 685
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	5 cut(s)	57, 134, 190, 194, 541
HpyCH4III	ACNGT	2 cut(s)	219, 671
HpyCH4IV	ACGT	2 cut(s)	15, 175
HpyCH4V	TGCA	6 cut(s)	42, 80, 392, 497, 608, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 703
HpyF3I	CTNAG	5 cut(s)	72, 224, 653, 710, 747
HpySE526I	ACGT	2 cut(s)	15, 175
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	623
HspAI	GCGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	732
Kzo9I	GATC	7 cut(s)	135, 227, 247, 433, 440, 472, 732
LguI	GCTCTTC	1 cut(s)	511
LmnI	GCTCC	1 cut(s)	625
LweI	GCATC	2 cut(s)	383, 655
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	15, 175
MaeIII	GTNAC	3 cut(s)	46, 360, 464
MalI	GATC	7 cut(s)	137, 229, 249, 435, 442, 474, 734
MboI	GATC	7 cut(s)	135, 227, 247, 433, 440, 472, 732
MboII	GAAGA	2 cut(s)	528, 770
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	5 cut(s)	111, 120, 449, 591, 657
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	9 cut(s)	4, 138, 185, 262, 337, 349, 448, 621, 731
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	5 cut(s)	108, 264, 265, 561, 703
MvaI	CCWGG	3 cut(s)	108, 561, 703
MwoI	GCNNNNNNNGC	2 cut(s)	77, 703
NciI	CCSGG	2 cut(s)	264, 265
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	7 cut(s)	135, 227, 247, 433, 440, 472, 732
NlaIII	CATG	1 cut(s)	623
NlaIV	GGNNCC	2 cut(s)	565, 707
NmuCI	GTSAC	3 cut(s)	46, 360, 464
PciSI	GCTCTTC	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	287, 753
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Ppu21I	YACGTR	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	554
Psp6I	CCWGG	3 cut(s)	106, 559, 701
PspEI	GGTNACC	1 cut(s)	360
PspGI	CCWGG	3 cut(s)	106, 559, 701
PspN4I	GGNNCC	2 cut(s)	565, 707
PspPI	GGNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	2 cut(s)	174, 763
RsaNI	GTAC	2 cut(s)	173, 762
SalI	GTCGAC	1 cut(s)	665
SapI	GCTCTTC	1 cut(s)	511
SaqAI	TTAA	1 cut(s)	411
Sau3AI	GATC	7 cut(s)	135, 227, 247, 433, 440, 472, 732
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	5 cut(s)	108, 264, 265, 561, 703
SduI	GDGCHC	1 cut(s)	523
SfaNI	GCATC	2 cut(s)	383, 655
SfcI	CTRYAG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	95
SmaI	CCCGGG	1 cut(s)	265
SmlI	CTYRAG	2 cut(s)	509, 782
SmoI	CTYRAG	2 cut(s)	509, 782
Sse9I	AATT	5 cut(s)	111, 120, 449, 591, 657
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	5 cut(s)	106, 262, 263, 559, 701
TaaI	ACNGT	2 cut(s)	219, 671
TaiI	ACGT	2 cut(s)	18, 178
TaqI	TCGA	4 cut(s)	138, 377, 396, 666
TasI	AATT	5 cut(s)	111, 120, 449, 591, 657
TatI	WGTACW	1 cut(s)	761
TfiI	GAWTC	2 cut(s)	287, 753
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	3 cut(s)	224, 450, 676
TseFI	GTSAC	3 cut(s)	46, 360, 464
Tsp45I	GTSAC	3 cut(s)	46, 360, 464
TspDTI	ATGAA	2 cut(s)	300, 608
TspGWI	ACGGA	1 cut(s)	603
TspMI	CCCGGG	1 cut(s)	263
TspRI	CASTG	3 cut(s)	224, 450, 676
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	3 cut(s)	111, 449, 591
XmaI	CCCGGG	1 cut(s)	263
XmiI	GTMKAC	2 cut(s)	666, 684
XspI	CTAG	1 cut(s)	117
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.