Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016429

Physical Location & Seq

Genomic Coordinates Reverse (-)

81059698 .. 81060798

Gene Structure 1101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG572900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTATGAATCCAATGTGGATGATGTAGGATATAGGCTTGTAGCCATTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGTCACCTGTTTCAGCATCGACAGAGCCGATTGCAGTCGAGCCTGATGTTCTTAAAGAAGTGAAGCAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCAGTAGGAACTCTTGAGAGAAGAGCCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACCTCCGTTTCATGTGGAGCTGTTCCGAAATGACCAGCATCGTCTGAGAATTGTAGTCGACAGTGAGAGTGAAGTAGACCTGATGGTGCAGTCCAGGCACCTTAGAGATGTTATTGTGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTTCTCAAGATAGAACATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

174

Amino Acids

19.64

Weight (kDa)

7.86

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	2 - 33	5.2e-08	AIR9 A9 domain
PH_AIR9	PF23218	63 - 159	9.5e-54	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313151 RchiOBHm_Chr1g0313161 RchiOBHm_Chr5g0015771
rosa_multiflora	Rmu_sc0005736.1_g000001 Rmu_sc0011343.1_g000003 Rmu_sc0011998.1_g000002 Rmu_sc0014154.1_g000001
rosa_samantha	Rh1AG001200 Rh5AG044600 Rh5BG550000 Rh5CG052200 Rh5CG132700 Rh5CG572900 Rh6AG032400
rosa_wichuraiana	Rw3G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	426
AccI	GTMKAC	2 cut(s)	387, 405
AclWI	GGATC	2 cut(s)	169, 201
AcsI	RAATTY	2 cut(s)	170, 312
AfaI	GTAC	1 cut(s)	484
AgsI	TTSAA	2 cut(s)	248, 478
AjnI	CCWGG	2 cut(s)	280, 422
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	3 cut(s)	151, 324, 349
AluI	AGCT	3 cut(s)	151, 324, 349
AlwI	GGATC	2 cut(s)	169, 201
ApoI	RAATTY	2 cut(s)	170, 312
AsuHPI	GGTGA	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	244
BccI	CCATC	2 cut(s)	62, 406
BciT130I	CCWGG	2 cut(s)	282, 424
BclI	TGATCA	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	216
Bme1390I	CCNGG	2 cut(s)	282, 424
BmiI	GGNNCC	2 cut(s)	286, 428
BmrFI	CCNGG	2 cut(s)	282, 424
BmsI	GCATC	2 cut(s)	104, 376
BpuEI	CTTGAG	2 cut(s)	251, 488
BseBI	CCWGG	2 cut(s)	282, 424
BseGI	GGATG	2 cut(s)	25, 73
BseMII	CTCAG	2 cut(s)	365, 482
BsgI	GTGCAG	1 cut(s)	437
BshNI	GGYRCC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	4 cut(s)	154, 161, 193, 453
BspCNI	CTCAG	2 cut(s)	366, 481
BspLI	GGNNCC	2 cut(s)	286, 428
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	2 cut(s)	169, 201
BspQI	GCTCTTC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	426
BssMI	GATC	4 cut(s)	154, 161, 193, 453
Bst2UI	CCWGG	2 cut(s)	282, 424
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	2 cut(s)	232, 504
BstDEI	CTNAG	3 cut(s)	374, 431, 468
BstEII	GGTNACC	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	25, 73
BstKTI	GATC	4 cut(s)	157, 164, 196, 456
BstMBI	GATC	4 cut(s)	154, 161, 193, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstNI	CCWGG	2 cut(s)	282, 424
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	2 cut(s)	280, 422
BstSFI	CTRYAG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	25, 73
BtsIMutI	CAGTG	2 cut(s)	171, 397
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	1 cut(s)	341
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	3 cut(s)	374, 431, 468
DpnI	GATC	4 cut(s)	156, 163, 195, 455
DpnII	GATC	4 cut(s)	154, 161, 193, 453
Eam1104I	CTCTTC	2 cut(s)	232, 504
EarI	CTCTTC	2 cut(s)	232, 504
Eco24I	GRGCYC	1 cut(s)	244
Eco91I	GGTNACC	1 cut(s)	81
EcoO65I	GGTNACC	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	280, 422
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	1 cut(s)	344
FaiI	YATR	7 cut(s)	6, 33, 275, 327, 342, 516, 521
FatI	CATG	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	453
FblI	GTMKAC	2 cut(s)	387, 405
FokI	GGATG	2 cut(s)	32, 80
FriOI	GRGCYC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	8, 474
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	388, 406
Hpy188I	TCNGA	5 cut(s)	161, 356, 375, 458, 471
Hpy188III	TCNNGA	3 cut(s)	230, 301, 505
Hpy8I	GTNNAC	2 cut(s)	388, 406
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	4 cut(s)	113, 218, 329, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	3 cut(s)	374, 431, 468
Hsp92II	CATG	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	154, 161, 193, 453
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	69, 99, 135, 267, 294, 377, 409, 422, 436
LweI	GCATC	2 cut(s)	104, 376
MaeIII	GTNAC	2 cut(s)	81, 185
MalI	GATC	4 cut(s)	156, 163, 195, 455
MboI	GATC	4 cut(s)	154, 161, 193, 453
MboII	GAAGA	2 cut(s)	249, 491
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	170, 312, 378
MnlI	CCTC	5 cut(s)	58, 70, 169, 342, 452
MseI	TTAA	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	282, 424
MvaI	CCWGG	2 cut(s)	282, 424
MwoI	GCNNNNNNNGC	1 cut(s)	424
NdeII	GATC	4 cut(s)	154, 161, 193, 453
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	2 cut(s)	286, 428
NmuCI	GTSAC	2 cut(s)	81, 185
PciSI	GCTCTTC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	8, 474
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	280, 422
PspEI	GGTNACC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	280, 422
PspN4I	GGNNCC	2 cut(s)	286, 428
PstI	CTGCAG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SalI	GTCGAC	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	4 cut(s)	154, 161, 193, 453
ScrFI	CCNGG	2 cut(s)	282, 424
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	8 cut(s)	88, 153, 273, 326, 334, 351, 411, 432
SfaNI	GCATC	2 cut(s)	104, 376
SfcI	CTRYAG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	230, 503
SmoI	CTYRAG	2 cut(s)	230, 503
Sse9I	AATT	3 cut(s)	170, 312, 378
StyD4I	CCNGG	2 cut(s)	280, 422
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	3 cut(s)	98, 117, 387
TasI	AATT	3 cut(s)	170, 312, 378
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	8, 474
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	171, 397
TseFI	GTSAC	2 cut(s)	81, 185
Tsp45I	GTSAC	2 cut(s)	81, 185
TspDTI	ATGAA	2 cut(s)	21, 329
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	2 cut(s)	171, 397
XapI	RAATTY	2 cut(s)	170, 312
XmiI	GTMKAC	2 cut(s)	387, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.