Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016429

Physical Location & Seq

Genomic Coordinates Reverse (-)

3733858 .. 3737528

Gene Structure 3671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG044600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAAAAGATTTGGATGAGAAAGGGAGCTAGAGAAGTGAACTCGAGAATTCCTAGAATTGATAAGCTGGAGATCGAAGGGAGGGGTTTCCACACCAACTTATATGCTGTACGTGGCATTTATAGTGGAGGGAAGGAAGGCAAAAGTAGAATACAGTGGCTCAGATCAATGGTTGGGAGTCCTGATCTTATCTCTATACCCGGGGAGGTAGGGAGAATGTATGAATCCAATGTGGATGATGTAGGATATAGGCTTGGATTATACATTGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCAGTAGGAACTCTTGAGAAAAGAACCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACTTCCTTTTCATGTAAGATTGGTGTTACTATACAATTATACAGGCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

156

Amino Acids

17.67

Weight (kDa)

9.96

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	20 - 87	1.6e-11	AIR9 A9 domain
PH_AIR9	PF23218	93 - 147	3e-22	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313151 RchiOBHm_Chr1g0313161 RchiOBHm_Chr5g0015771
rosa_multiflora	Rmu_sc0005736.1_g000001 Rmu_sc0011343.1_g000003 Rmu_sc0011998.1_g000002 Rmu_sc0014154.1_g000001
rosa_samantha	Rh1AG001200 Rh5AG044600 Rh5BG550000 Rh5CG052200 Rh5CG132700 Rh5CG572900 Rh6AG032400
rosa_wichuraiana	Rw3G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AclWI	GGATC	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	48, 402
AfaI	GTAC	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	3 cut(s)	29, 67, 414
AluI	AGCT	3 cut(s)	29, 67, 414
AlwI	GGATC	1 cut(s)	291
Ama87I	CYCGRG	2 cut(s)	43, 200
ApoI	RAATTY	2 cut(s)	48, 402
AsuC2I	CCSGG	2 cut(s)	201, 202
AvaI	CYCGRG	2 cut(s)	43, 200
BciT130I	CCWGG	1 cut(s)	372
BcnI	CCSGG	2 cut(s)	201, 202
BfaI	CTAG	3 cut(s)	30, 54, 469
BfmI	CTRYAG	1 cut(s)	306
Bme1390I	CCNGG	3 cut(s)	201, 202, 372
BmeT110I	CYCGRG	2 cut(s)	43, 200
BmiI	GGNNCC	2 cut(s)	376, 466
BmrFI	CCNGG	3 cut(s)	201, 202, 372
BpmI	CTGGAG	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	2 cut(s)	201, 202
BsaAI	YACGTR	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	200, 201
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	200, 201
BseGI	GGATG	2 cut(s)	21, 241
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	175
BsiHKCI	CYCGRG	2 cut(s)	43, 200
BsiSI	CCGG	1 cut(s)	201
BsoBI	CYCGRG	2 cut(s)	43, 200
Bsp143I	GATC	4 cut(s)	72, 164, 184, 283
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	376, 466
BspMAI	CTGCAG	1 cut(s)	310
BspPI	GGATC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	200, 201
BssMI	GATC	4 cut(s)	72, 164, 184, 283
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	21, 241
BstKTI	GATC	4 cut(s)	75, 167, 187, 286
BstMBI	GATC	4 cut(s)	72, 164, 184, 283
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	3 cut(s)	199, 200, 370
BstSFI	CTRYAG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	21, 241
BtsIMutI	CAGTG	1 cut(s)	161
Cfr9I	CCCGGG	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	1 cut(s)	431
CviJI	RGCY	7 cut(s)	29, 67, 160, 253, 370, 414, 465
CviKI_1	RGCY	7 cut(s)	29, 67, 160, 253, 370, 414, 465
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	4 cut(s)	74, 166, 186, 285
DpnII	GATC	4 cut(s)	72, 164, 184, 283
Eco88I	CYCGRG	2 cut(s)	43, 200
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	434
FatI	CATG	1 cut(s)	430
FokI	GGATG	2 cut(s)	28, 248
FspBI	CTAG	3 cut(s)	30, 54, 469
GsuI	CTGGAG	1 cut(s)	89
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	1 cut(s)	434
HinfI	GANTC	2 cut(s)	178, 224
HpaII	CCGG	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	4 cut(s)	45, 182, 320, 391
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	4 cut(s)	71, 127, 131, 352
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	269, 308, 419
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	434
Kzo9I	GATC	4 cut(s)	72, 164, 184, 283
LmnI	GCTCC	2 cut(s)	26, 470
LpnPI	CCDG	6 cut(s)	53, 195, 214, 357, 384, 447
MaeI	CTAG	3 cut(s)	30, 54, 469
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	2 cut(s)	275, 444
MalI	GATC	4 cut(s)	74, 166, 186, 285
MboI	GATC	4 cut(s)	72, 164, 184, 283
MluCI	AATT	4 cut(s)	48, 57, 402, 454
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	75, 122, 199
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	3 cut(s)	201, 202, 372
MvaI	CCWGG	1 cut(s)	372
NciI	CCSGG	2 cut(s)	201, 202
NdeII	GATC	4 cut(s)	72, 164, 184, 283
NlaIII	CATG	1 cut(s)	434
NlaIV	GGNNCC	2 cut(s)	376, 466
NmuCI	GTSAC	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	224
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Ppu21I	YACGTR	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	376, 466
PstI	CTGCAG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
Sau3AI	GATC	4 cut(s)	72, 164, 184, 283
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	201, 202, 372
SetI	ASST	6 cut(s)	31, 69, 115, 210, 363, 416
SfcI	CTRYAG	1 cut(s)	306
Sfr274I	CTCGAG	1 cut(s)	43
SlaI	CTCGAG	1 cut(s)	43
SmaI	CCCGGG	1 cut(s)	202
SmlI	CTYRAG	2 cut(s)	43, 320
SmoI	CTYRAG	2 cut(s)	43, 320
Sse9I	AATT	4 cut(s)	48, 57, 402, 454
SspMI	CTAG	3 cut(s)	30, 54, 469
StyD4I	CCNGG	3 cut(s)	199, 200, 370
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	44, 75
TasI	AATT	4 cut(s)	48, 57, 402, 454
TfiI	GAWTC	1 cut(s)	224
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	237, 419
TspMI	CCCGGG	1 cut(s)	200
TspRI	CASTG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	48, 402
XhoI	CTCGAG	1 cut(s)	43
XmaI	CCCGGG	1 cut(s)	200
XspI	CTAG	3 cut(s)	30, 54, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.