Rh5CG132700

187-kDa microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016429
Physical Location & Seq
Forward (+)
11103154 .. 11105744
2591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG132700.1

Sequence Viewer

Length: 858 bp
ATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACAGTTGAAGTGATCCCAGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATGTCAGATATCAATGGTTCTTTTCTTCAGCAGTGGGAGATAATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTCCTACAAGATGCAATTAGAGGATGTCGGGCGCTGTCTAAAATGTGAGTGCATTGTGACTGATGTGTTTGGAAGTTCAGCTGAGCCTGCATATGCTGAAACTGGACCAATACTACCAGGTAAATTCCATTCCAAAGGGAGTTGGGGAGAATGTATGAATCCAATGTGGATGATGTCGGATACAGGCTTTGTAGCCATTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGTCACCTGTTTCAGCATCGACAGAGCCGATTGCAGTCGAGCCTGATGTTCTTAAAGAAGTGAAGCAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGTGGTAGGAACTCTTGAGAGAAGAACCCTCGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACCTCCGTTTCATGTGGAGCTGTTCCGAAATGACCAGCATCGTCTGAGAATTGTAGGAGACAGTGAGAGTGTGGTAGACCTGATGGTGCAGTCCAGACATGTTAGAGATGTTATTGTGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTCCTCAAGATAGAACATAATATGTAA

Protein Analysis

285

Amino Acids

31.96

Weight (kDa)

7.01

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_AIR9 PF23218 174 - 270 1.5e-50 AIR9 PH-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 608
Acc36I ACCTGC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 738
AclWI GGATC 3 cut(s) 49, 502, 534
AcsI RAATTY 3 cut(s) 305, 503, 645
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 95, 817
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 3 cut(s) 50, 158, 811
AjnI CCWGG 2 cut(s) 298, 613
AjuI GAANNNNNNNTTGG 2 cut(s) 614, 646
AluBI AGCT 5 cut(s) 79, 263, 484, 657, 682
AluI AGCT 5 cut(s) 79, 263, 484, 657, 682
Alw26I GTCTC 1 cut(s) 714
AlwI GGATC 3 cut(s) 49, 502, 534
ApoI RAATTY 3 cut(s) 305, 503, 645
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 44, 408
AvaII GGWCC 1 cut(s) 287
BccI CCATC 2 cut(s) 395, 739
BciT130I CCWGG 2 cut(s) 300, 615
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 1 cut(s) 786
BcoDI GTCTC 1 cut(s) 714
BfoI RGCGCY 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 175
BfuI GTATCC 1 cut(s) 355
BlpI GCTNAGC 2 cut(s) 171, 264
Bme1390I CCNGG 2 cut(s) 300, 615
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 619
BmrFI CCNGG 2 cut(s) 300, 615
BmsI GCATC 3 cut(s) 183, 437, 709
BplI GAGNNNNNCTC 2 cut(s) 55, 87
Bpu1102I GCTNAGC 2 cut(s) 171, 264
BpuEI CTTGAG 2 cut(s) 584, 821
Bse1I ACTGG 2 cut(s) 19, 289
BseBI CCWGG 2 cut(s) 300, 615
BseGI GGATG 3 cut(s) 211, 357, 406
BseMII CTCAG 4 cut(s) 185, 255, 698, 815
BseNI ACTGG 2 cut(s) 19, 289
BseRI GAGGAG 1 cut(s) 824
BsgI GTGCAG 1 cut(s) 770
BsmAI GTCTC 1 cut(s) 714
Bsp143I GATC 5 cut(s) 54, 487, 494, 526, 786
Bsp1720I GCTNAGC 2 cut(s) 171, 264
BspCNI CTCAG 4 cut(s) 184, 256, 699, 814
BspLI GGNNCC 1 cut(s) 619
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 3 cut(s) 49, 502, 534
BsrI ACTGG 2 cut(s) 19, 289
BssMI GATC 5 cut(s) 54, 487, 494, 526, 786
Bst2UI CCWGG 2 cut(s) 300, 615
Bst4CI ACNGT 3 cut(s) 46, 550, 725
BstC8I GCNNGC 2 cut(s) 6, 270
BstDEI CTNAG 4 cut(s) 171, 264, 707, 801
BstEII GGTNACC 1 cut(s) 414
BstF5I GGATG 3 cut(s) 211, 357, 406
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 5 cut(s) 57, 490, 497, 529, 789
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 5 cut(s) 54, 487, 494, 526, 786
BstMWI GCNNNNNNNGC 2 cut(s) 85, 269
BstNI CCWGG 2 cut(s) 300, 615
BstNSI RCATGY 1 cut(s) 764
BstPI GGTNACC 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 298, 613
BsuI GTATCC 1 cut(s) 355
BtsCI GGATG 3 cut(s) 211, 357, 406
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 4 cut(s) 12, 141, 504, 730
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 6, 270
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 287
CsiI ACCWGGT 1 cut(s) 298
Csp6I GTAC 2 cut(s) 94, 816
CviAII CATG 2 cut(s) 674, 761
CviQI GTAC 2 cut(s) 94, 816
DdeI CTNAG 4 cut(s) 171, 264, 707, 801
DpnI GATC 5 cut(s) 56, 489, 496, 528, 788
DpnII GATC 5 cut(s) 54, 487, 494, 526, 786
Eco32I GATATC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 414
EcoO65I GGTNACC 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 298, 613
EcoRV GATATC 1 cut(s) 113
FaeI CATG 2 cut(s) 677, 764
FaiI YATR 9 cut(s) 274, 276, 338, 608, 660, 675, 762, 849, 854
FatI CATG 2 cut(s) 673, 760
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 786
FblI GTMKAC 1 cut(s) 738
FokI GGATG 3 cut(s) 218, 364, 413
GlaI GCGC 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 217
HhaI GCGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 677, 764
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 3 cut(s) 70, 340, 807
HphI GGTGA 2 cut(s) 44, 408
Hpy166II GTNNAC 1 cut(s) 739
Hpy188I TCNGA 7 cut(s) 110, 361, 494, 689, 708, 791, 804
Hpy188III TCNNGA 4 cut(s) 563, 634, 756, 838
Hpy8I GTNNAC 1 cut(s) 739
HpyAV CCTTC 2 cut(s) 23, 595
HpyCH4III ACNGT 3 cut(s) 46, 550, 725
HpyCH4V TGCA 6 cut(s) 196, 234, 272, 446, 662, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 269
HpyF3I CTNAG 4 cut(s) 171, 264, 707, 801
Hsp92II CATG 2 cut(s) 677, 764
HspAI GCGC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 786
Kzo9I GATC 5 cut(s) 54, 487, 494, 526, 786
LmnI GCTCC 2 cut(s) 188, 679
LweI GCATC 3 cut(s) 183, 437, 709
MabI ACCWGGT 1 cut(s) 298
MaeIII GTNAC 3 cut(s) 238, 414, 518
MalI GATC 5 cut(s) 56, 489, 496, 528, 788
MboI GATC 5 cut(s) 54, 487, 494, 526, 786
MboII GAAGA 2 cut(s) 120, 582
MluCI AATT 5 cut(s) 197, 305, 503, 645, 711
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 8 cut(s) 196, 391, 403, 502, 587, 675, 785, 845
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 300, 615
MvaI CCWGG 2 cut(s) 300, 615
MwoI GCNNNNNNNGC 2 cut(s) 85, 269
NdeI CATATG 1 cut(s) 274
NdeII GATC 5 cut(s) 54, 487, 494, 526, 786
NlaIII CATG 2 cut(s) 677, 764
NlaIV GGNNCC 1 cut(s) 619
NmuCI GTSAC 3 cut(s) 238, 414, 518
NspI RCATGY 1 cut(s) 764
PciI ACATGT 1 cut(s) 760
PcsI WCGNNNNNNNCGW 1 cut(s) 437
PfeI GAWTC 2 cut(s) 340, 807
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PscI ACATGT 1 cut(s) 760
PsiI TTATAA 1 cut(s) 608
Psp6I CCWGG 2 cut(s) 298, 613
PspEI GGTNACC 1 cut(s) 414
PspGI CCWGG 2 cut(s) 298, 613
PspN4I GGNNCC 1 cut(s) 619
PspPI GGNCC 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 95, 817
RsaNI GTAC 2 cut(s) 94, 816
SaqAI TTAA 1 cut(s) 465
Sau3AI GATC 5 cut(s) 54, 487, 494, 526, 786
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 300, 615
SexAI ACCWGGT 1 cut(s) 298
SfaNI GCATC 3 cut(s) 183, 437, 709
SinI GGWCC 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 563, 836
SmoI CTYRAG 2 cut(s) 563, 836
Sse9I AATT 5 cut(s) 197, 305, 503, 645, 711
StyD4I CCNGG 2 cut(s) 298, 613
TaaI ACNGT 3 cut(s) 46, 550, 725
TaqI TCGA 4 cut(s) 27, 431, 450, 579
TasI AATT 5 cut(s) 197, 305, 503, 645, 711
TatI WGTACW 2 cut(s) 93, 815
TfiI GAWTC 2 cut(s) 340, 807
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 4 cut(s) 19, 141, 504, 730
TseFI GTSAC 3 cut(s) 238, 414, 518
Tsp45I GTSAC 3 cut(s) 238, 414, 518
TspDTI ATGAA 2 cut(s) 353, 662
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 4 cut(s) 19, 141, 504, 730
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 3 cut(s) 305, 503, 645
XceI RCATGY 1 cut(s) 764
XmiI GTMKAC 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.