Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011343.1

Orthogroup ID

OG0016429

Physical Location & Seq

Genomic Coordinates Forward (+)

8192 .. 10272

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011343.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggggatattgcagcagggaggcggtgagggagcggaggttgatggtggtggtggtggaagagggagaggaggagagagagggatgagagggagaggaggaagaagaggaagagggggagggagaggagggaggggaaggagagaaggagaaggagataggagaaggcaaggggatggggatggcggcattacgccggggctctatcttggggacaatgccgatggggagaagctggctaagaggcttggcccggaagttatgaatcagttgactgaagcatttgaggatatgagtgatcaagtgctgccgtcgcctttgggtgatgcttatgtcgatgcattggataccaattgtatgattgagtttgagccggagtatcttatgggggagtttaatcaaaacccagatattgatgaaaaaccgcagactaagagaacgaagggagaaaacagcgcaaatacttcattttggggttggtctgagggtcctgtgctacatgggattgagaatgtggtaaagccgaggctgaaagtaaacccttttggggatgccaagccgagggaagtgttactggaggagcgaggtaaggattggaggaagattgatcaacagttggagcatcgctctgttgacaggtatgtttttgcattgttattttatgcttgggaggtagggagaatgtatgaatccaatgtggatgatgtaggatataggcttgtagccatttacactcctgtaagagaggatggagtggaggggtcacctgtttcagcatcgacagagccgattgcagtcgagcctgatgttcttaaagaagtgaagcagaagcttgatctcggatcagtgaaatttgaggcattgtgtgacaaggatcaatctacaaaaaaggttctcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

32.93

Weight (kDa)

5.04

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313151 RchiOBHm_Chr1g0313161 RchiOBHm_Chr5g0015771
rosa_multiflora	Rmu_sc0005736.1_g000001 Rmu_sc0011343.1_g000003 Rmu_sc0011998.1_g000002 Rmu_sc0014154.1_g000001
rosa_samantha	Rh1AG001200 Rh5AG044600 Rh5BG550000 Rh5CG052200 Rh5CG132700 Rh5CG572900 Rh6AG032400
rosa_wichuraiana	Rw3G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	35
AciI	CCGC	4 cut(s)	24, 35, 186, 425
AclWI	GGATC	2 cut(s)	850, 882
AcsI	RAATTY	1 cut(s)	851
AcuI	CTGAAG	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	547, 561
AluBI	AGCT	2 cut(s)	235, 832
AluI	AGCT	2 cut(s)	235, 832
AlwI	GGATC	2 cut(s)	850, 882
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	13, 307
ApoI	RAATTY	1 cut(s)	851
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	251, 488
AsuC2I	CCSGG	2 cut(s)	198, 254
AsuHPI	GGTGA	3 cut(s)	38, 335, 756
AvaII	GGWCC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	25, 294
BccI	CCATC	5 cut(s)	38, 170, 176, 218, 743
BceAI	ACGGC	1 cut(s)	295
BciVI	GTATCC	1 cut(s)	340
BclI	TGATCA	2 cut(s)	298, 607
BcnI	CCSGG	2 cut(s)	198, 254
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	3 cut(s)	14, 187, 308
BlsI	GCNGC	3 cut(s)	15, 188, 309
Bme1390I	CCNGG	2 cut(s)	198, 254
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	251, 488
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	2 cut(s)	198, 254
BmsI	GCATC	5 cut(s)	316, 328, 541, 631, 785
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
BpmI	CTGGAG	1 cut(s)	596
BpuMI	CCSGG	2 cut(s)	198, 254
BsaJI	CCNNGG	3 cut(s)	197, 524, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 561
Bse1I	ACTGG	1 cut(s)	579
BseDI	CCNNGG	3 cut(s)	197, 524, 560
BseGI	GGATG	6 cut(s)	90, 181, 187, 556, 706, 754
BseLI	CCNNNNNNNGG	2 cut(s)	547, 561
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	5 cut(s)	84, 87, 111, 141, 593
BseXI	GCAGC	2 cut(s)	25, 294
BshFI	GGCC	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	197, 254, 374
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	547, 561
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	298, 607, 835, 842, 874
BspACI	CCGC	4 cut(s)	24, 35, 186, 425
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	1 cut(s)	489
BspPI	GGATC	2 cut(s)	850, 882
BsrBI	CCGCTC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	3 cut(s)	197, 524, 560
BssMI	GATC	5 cut(s)	298, 607, 835, 842, 874
Bst4CI	ACNGT	1 cut(s)	615
Bst6I	CTCTTC	3 cut(s)	55, 100, 106
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	240, 432, 483
BstEII	GGTNACC	1 cut(s)	762
BstF5I	GGATG	6 cut(s)	90, 181, 187, 556, 706, 754
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	5 cut(s)	301, 610, 838, 845, 877
BstMBI	GATC	5 cut(s)	298, 607, 835, 842, 874
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstPI	GGTNACC	1 cut(s)	762
BstSCI	CCNGG	2 cut(s)	196, 252
BstV1I	GCAGC	2 cut(s)	25, 294
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	608
BtsCI	GGATG	6 cut(s)	90, 181, 187, 556, 706, 754
BtsIMutI	CAGTG	1 cut(s)	852
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	458
Cfr13I	GGNCC	2 cut(s)	251, 488
CviAII	CATG	1 cut(s)	500
DdeI	CTNAG	3 cut(s)	240, 432, 483
DpnI	GATC	5 cut(s)	300, 609, 837, 844, 876
DpnII	GATC	5 cut(s)	298, 607, 835, 842, 874
Eam1104I	CTCTTC	3 cut(s)	55, 100, 106
EarI	CTCTTC	3 cut(s)	55, 100, 106
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	762
EcoO109I	RGGNCCY	1 cut(s)	488
EcoO65I	GGTNACC	1 cut(s)	762
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	1 cut(s)	503
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	499
FbaI	TGATCA	2 cut(s)	298, 607
Fnu4HI	GCNGC	3 cut(s)	14, 187, 308
FokI	GGATG	6 cut(s)	97, 188, 194, 563, 713, 761
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	3 cut(s)	14, 187, 308
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	3 cut(s)	14, 187, 308
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	3 cut(s)	197, 254, 374
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	1 cut(s)	503
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HincII	GTYRAC	2 cut(s)	273, 634
HindII	GTYRAC	2 cut(s)	273, 634
HindIII	AAGCTT	1 cut(s)	830
HinfI	GANTC	2 cut(s)	265, 689
HpaII	CCGG	3 cut(s)	197, 254, 374
HphI	GGTGA	3 cut(s)	38, 335, 756
Hpy166II	GTNNAC	3 cut(s)	273, 538, 634
Hpy188I	TCNGA	2 cut(s)	484, 842
Hpy8I	GTNNAC	3 cut(s)	273, 538, 634
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	5 cut(s)	132, 140, 146, 159, 436
HpyCH4III	ACNGT	1 cut(s)	615
HpyCH4V	TGCA	4 cut(s)	13, 341, 650, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	3 cut(s)	240, 432, 483
Hsp92II	CATG	1 cut(s)	503
HspAI	GCGC	1 cut(s)	456
Ksp22I	TGATCA	2 cut(s)	298, 607
Kzo9I	GATC	5 cut(s)	298, 607, 835, 842, 874
LmnI	GCTCC	3 cut(s)	32, 580, 619
Lsp1109I	GCAGC	2 cut(s)	25, 294
LweI	GCATC	5 cut(s)	316, 328, 541, 631, 785
MaeIII	GTNAC	3 cut(s)	570, 762, 866
MalI	GATC	5 cut(s)	300, 609, 837, 844, 876
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	5 cut(s)	298, 607, 835, 842, 874
MboII	GAAGA	5 cut(s)	72, 114, 117, 123, 613
MfeI	CAATTG	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	2 cut(s)	352, 851
MmeI	TCCRAC	1 cut(s)	597
Mph1103I	ATGCAT	1 cut(s)	343
MseI	TTAA	2 cut(s)	396, 813
MspI	CCGG	3 cut(s)	197, 254, 374
MspR9I	CCNGG	2 cut(s)	198, 254
MunI	CAATTG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	313
NciI	CCSGG	2 cut(s)	198, 254
NdeII	GATC	5 cut(s)	298, 607, 835, 842, 874
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	1 cut(s)	489
NmeAIII	GCCGAG	2 cut(s)	549, 585
NmuCI	GTSAC	2 cut(s)	762, 866
NsiI	ATGCAT	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	785
PfeI	GAWTC	2 cut(s)	265, 689
PkrI	GCNGC	3 cut(s)	15, 188, 309
PpuMI	RGGWCCY	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	488
PspEI	GGTNACC	1 cut(s)	762
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	2 cut(s)	251, 488
PspPPI	RGGWCCY	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	396, 813
SatI	GCNGC	3 cut(s)	14, 187, 308
Sau3AI	GATC	5 cut(s)	298, 607, 835, 842, 874
Sau96I	GGNCC	2 cut(s)	251, 488
ScrFI	CCNGG	2 cut(s)	198, 254
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	8 cut(s)	42, 237, 589, 641, 675, 769, 834, 894
SfaNI	GCATC	5 cut(s)	316, 328, 541, 631, 785
SinI	GGWCC	1 cut(s)	488
Sse9I	AATT	2 cut(s)	352, 851
SsiI	CCGC	4 cut(s)	24, 35, 186, 425
StyD4I	CCNGG	2 cut(s)	196, 252
TaaI	ACNGT	1 cut(s)	615
TaqI	TCGA	3 cut(s)	336, 779, 798
TasI	AATT	2 cut(s)	352, 851
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	2 cut(s)	265, 689
Tru1I	TTAA	2 cut(s)	396, 813
Tru9I	TTAA	2 cut(s)	396, 813
TscAI	CASTG	1 cut(s)	852
TseFI	GTSAC	2 cut(s)	762, 866
TseI	GCWGC	2 cut(s)	13, 307
Tsp45I	GTSAC	2 cut(s)	762, 866
TspDTI	ATGAA	4 cut(s)	278, 432, 456, 702
TspRI	CASTG	1 cut(s)	852
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	851
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.