Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011998.1

Orthogroup ID

OG0016429

Physical Location & Seq

Genomic Coordinates Reverse (-)

9859 .. 11090

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011998.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggttgggagtcctgatcttatctctatacccggggaggtagggagaatgtatgaatccaatgtggatgatgtaggatataggcttgtagccatttacactcctgtaagagaggatggagtggaggggtcacctgtttcagcatcgacagagccgattgcagtcgagcctgatgttcttaaagaagtgaagcagaagcttgatctcggatcagtgaaatttgaggcattgtgtgacaaggatcaatctacaaaaaagactactgcagtaggaactcttgagagaagaacccttgaagtcaatagaaaaagagtgaaggttataaagcctggttccaagacttctttcccgactactgaaattcgtggaagctatgcacctccgtttcatgtggagctgttccgaaatgaccagcatcgtctgagaattgtagttgacagtgagagtgaagtagacttgatggtgcagtccaggcaccttagagatgttattgtgcttgtgatcagaggctttgctcagagattcaatagtacatcactcaatactcttctcaagatagaacataatatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

190

Amino Acids

21.28

Weight (kDa)

6.92

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0313151 RchiOBHm_Chr1g0313161 RchiOBHm_Chr5g0015771
rosa_multiflora	Rmu_sc0005736.1_g000001 Rmu_sc0011343.1_g000003 Rmu_sc0011998.1_g000002 Rmu_sc0014154.1_g000001
rosa_samantha	Rh1AG001200 Rh5AG044600 Rh5BG550000 Rh5CG052200 Rh5CG132700 Rh5CG572900 Rh6AG032400
rosa_wichuraiana	Rw3G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	453
AclWI	GGATC	2 cut(s)	217, 249
AcsI	RAATTY	2 cut(s)	218, 360
AfaI	GTAC	1 cut(s)	532
AgsI	TTSAA	2 cut(s)	296, 526
AjnI	CCWGG	2 cut(s)	328, 470
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	199, 372, 397
AluI	AGCT	3 cut(s)	199, 372, 397
AlwI	GGATC	2 cut(s)	217, 249
Ama87I	CYCGRG	1 cut(s)	32
ApoI	RAATTY	2 cut(s)	218, 360
AsuC2I	CCSGG	2 cut(s)	33, 34
AsuHPI	GGTGA	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	474
BccI	CCATC	2 cut(s)	110, 454
BciT130I	CCWGG	2 cut(s)	330, 472
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	2 cut(s)	33, 34
BfmI	CTRYAG	1 cut(s)	264
Bme1390I	CCNGG	4 cut(s)	33, 34, 330, 472
BmeT110I	CYCGRG	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	334, 476
BmrFI	CCNGG	4 cut(s)	33, 34, 330, 472
BmsI	GCATC	2 cut(s)	152, 424
BpuEI	CTTGAG	2 cut(s)	299, 536
BpuMI	CCSGG	2 cut(s)	33, 34
BsaJI	CCNNGG	2 cut(s)	32, 33
BseBI	CCWGG	2 cut(s)	330, 472
BseDI	CCNNGG	2 cut(s)	32, 33
BseGI	GGATG	2 cut(s)	73, 121
BseMII	CTCAG	2 cut(s)	413, 530
BsgI	GTGCAG	1 cut(s)	485
BshNI	GGYRCC	1 cut(s)	474
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	5 cut(s)	16, 202, 209, 241, 501
BspCNI	CTCAG	2 cut(s)	414, 529
BspLI	GGNNCC	2 cut(s)	334, 476
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	2 cut(s)	217, 249
BspT107I	GGYRCC	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	32, 33
BssMI	GATC	5 cut(s)	16, 202, 209, 241, 501
Bst2UI	CCWGG	2 cut(s)	330, 472
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	552
BstDEI	CTNAG	3 cut(s)	422, 479, 516
BstEII	GGTNACC	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	73, 121
BstKTI	GATC	5 cut(s)	19, 205, 212, 244, 504
BstMBI	GATC	5 cut(s)	16, 202, 209, 241, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstNI	CCWGG	2 cut(s)	330, 472
BstPI	GGTNACC	1 cut(s)	129
BstSCI	CCNGG	4 cut(s)	31, 32, 328, 470
BstSFI	CTRYAG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	73, 121
BtsIMutI	CAGTG	2 cut(s)	219, 445
Cfr9I	CCCGGG	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	9 cut(s)	85, 92, 154, 169, 199, 328, 372, 397, 510
CviKI_1	RGCY	9 cut(s)	85, 92, 154, 169, 199, 328, 372, 397, 510
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	422, 479, 516
DpnI	GATC	5 cut(s)	18, 204, 211, 243, 503
DpnII	GATC	5 cut(s)	16, 202, 209, 241, 501
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	129
EcoO65I	GGTNACC	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	328, 470
FaeI	CATG	1 cut(s)	392
FaiI	YATR	8 cut(s)	29, 54, 81, 323, 375, 390, 564, 569
FatI	CATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	453
FokI	GGATG	2 cut(s)	80, 128
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	3 cut(s)	10, 56, 522
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	123
Hpy166II	GTNNAC	2 cut(s)	436, 454
Hpy188I	TCNGA	5 cut(s)	209, 404, 423, 506, 519
Hpy188III	TCNNGA	4 cut(s)	14, 278, 349, 553
Hpy8I	GTNNAC	2 cut(s)	436, 454
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	4 cut(s)	161, 266, 377, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	3 cut(s)	422, 479, 516
Hsp92II	CATG	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	5 cut(s)	16, 202, 209, 241, 501
LmnI	GCTCC	1 cut(s)	394
LweI	GCATC	2 cut(s)	152, 424
MaeIII	GTNAC	2 cut(s)	129, 233
MalI	GATC	5 cut(s)	18, 204, 211, 243, 503
MboI	GATC	5 cut(s)	16, 202, 209, 241, 501
MboII	GAAGA	2 cut(s)	297, 539
MluCI	AATT	3 cut(s)	218, 360, 426
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	6 cut(s)	31, 106, 118, 217, 390, 500
MseI	TTAA	1 cut(s)	180
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	4 cut(s)	33, 34, 330, 472
MvaI	CCWGG	2 cut(s)	330, 472
MwoI	GCNNNNNNNGC	1 cut(s)	472
NciI	CCSGG	2 cut(s)	33, 34
NdeII	GATC	5 cut(s)	16, 202, 209, 241, 501
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	2 cut(s)	334, 476
NmuCI	GTSAC	2 cut(s)	129, 233
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	56, 522
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	328, 470
PspEI	GGTNACC	1 cut(s)	129
PspGI	CCWGG	2 cut(s)	328, 470
PspN4I	GGNNCC	2 cut(s)	334, 476
PstI	CTGCAG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	5 cut(s)	16, 202, 209, 241, 501
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	4 cut(s)	33, 34, 330, 472
SetI	ASST	8 cut(s)	42, 136, 201, 321, 374, 382, 399, 480
SfaNI	GCATC	2 cut(s)	152, 424
SfcI	CTRYAG	1 cut(s)	264
SmaI	CCCGGG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	278, 551
SmoI	CTYRAG	2 cut(s)	278, 551
Sse9I	AATT	3 cut(s)	218, 360, 426
StyD4I	CCNGG	4 cut(s)	31, 32, 328, 470
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	146, 165
TasI	AATT	3 cut(s)	218, 360, 426
TatI	WGTACW	1 cut(s)	530
TfiI	GAWTC	2 cut(s)	56, 522
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	219, 445
TseFI	GTSAC	2 cut(s)	129, 233
Tsp45I	GTSAC	2 cut(s)	129, 233
TspDTI	ATGAA	2 cut(s)	69, 377
TspGWI	ACGGA	1 cut(s)	372
TspMI	CCCGGG	1 cut(s)	32
TspRI	CASTG	2 cut(s)	219, 445
XapI	RAATTY	2 cut(s)	218, 360
XmaI	CCCGGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.